Rh4BG212900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000611
Physical Location & Seq
Reverse (-)
37056046 .. 37061093
5048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG212900.1

Sequence Viewer

Length: 1266 bp
ATGGACTTCACAAAGAAGCGGAAGACGGACGAGAACGGCGACGTTTCGACTGCCCCGCCTTCCCAATTAACAACCCTAACCCCCGACGACTTCCGCAAACTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGAATCCCTCCGCCACGTCACCAACCGTGACCTCACCCTCCGCAAGCTCTTCGTCCGTGGCCTCGGCGGCGACACCACCACCGATTCACTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTCGACGAGGCGATCGTCATCTTCGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCCGCCGCCGGACATTCGGCGCCGTTCAGTACCAGCAACGGCGGCGCCGATGTCTCGGCGAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATGAGGCCACCGGAAAATCAAAGGGCTTTGCATTCTTAGTGTACAAGACCGAAGAAGGTGCCAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGCTGTGGATAACAAGAAGGGCAAACACGGTGGCGCCCAAGCCCCTCCCGGTGATATTTCCGGGGTCCCTCCACCGCAGCAAATGCAGCCGGGCATGTTTAGGCCACAGCCTCAGCCCGGGCAGTACCCGGTTTTTGCTGGTGGGCATGCGCCAGTGTCACTATGGGGTGCCTCCACAGTTGCCTCCAACTTCGGTAGGAATGCCTCATGGAGTCTATCCAGACAGTTCGCGGTATGGGGTTCCTCCACCACAGCATCATCAGGCTCCCTCAATGCCAAGAGGACCACCTGGGGGAATGTATCCGCCACCTTACTACTGAGTGATTATGGGGTGCTAAATAAGATTAGTGCTACTTCACCAAATCTCCCTGCTGTTTCTTCACTACTGCTTCTAAGGTTGCTTTGGAGTGTTAACCTTTCTTGTTGTTTTGATTGGAGCGGTATGGGTATTACTGAAGCATTGCGATTGCAGCGTCACCAATTTTTTTCTGGGATAGATTGGAGTGCAAAGTCAAACAAAATAGTTACTTATTGGAACTTGAGAAGACTTCCTTGTACCTCCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

421

Amino Acids

45.48

Weight (kDa)

8.96

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 74 - 141 1.4e-14 RNA recognition motif
RRM_7 PF16367 167 - 225 2.6e-06 RNA recognition motif
RRM_1 PF00076 169 - 225 4.4e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 419
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 6 cut(s) 457, 482, 520, 659, 731, 866
AccBSI CCGCTC 3 cut(s) 267, 671, 1137
AccII CGCG 1 cut(s) 929
AcuI CTGAAG 1 cut(s) 1173
AcyI GRCGYC 4 cut(s) 168, 458, 483, 732
AfaI GTAC 5 cut(s) 437, 469, 644, 824, 1255
AfiI CCNNNNNNNGG 3 cut(s) 298, 815, 990
AgsI TTSAA 3 cut(s) 361, 581, 688
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 662, 986
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 815
AoxI GGCC 5 cut(s) 232, 321, 606, 666, 800
ApeKI GCWGC 3 cut(s) 775, 784, 1168
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 5 cut(s) 388, 460, 485, 734, 850
AspS9I GGNCC 4 cut(s) 587, 666, 763, 981
AsuC2I CCSGG 6 cut(s) 747, 760, 789, 816, 817, 827
AsuHPI GGTGA 7 cut(s) 184, 199, 346, 415, 761, 1047, 1166
AvaI CYCGRG 1 cut(s) 815
AvaII GGWCC 3 cut(s) 587, 763, 981
BanI GGYRCC 6 cut(s) 457, 482, 520, 659, 731, 866
BbsI GAAGAC 3 cut(s) 29, 265, 1249
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 3 cut(s) 787, 796, 1180
BceAI ACGGC 6 cut(s) 52, 134, 430, 445, 493, 508
BcgI CGANNNNNNTGC 6 cut(s) 205, 239, 391, 425, 641, 675
BciT130I CCWGG 2 cut(s) 664, 988
BciVI GTATCC 1 cut(s) 1009
BcnI CCSGG 6 cut(s) 747, 760, 789, 816, 817, 827
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 3 cut(s) 461, 486, 735
BfuI GTATCC 1 cut(s) 1009
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 8 cut(s) 241, 441, 444, 481, 669, 776, 785, 1169
BlsI GCNGC 8 cut(s) 242, 442, 445, 482, 670, 777, 786, 1170
Bme1390I CCNGG 8 cut(s) 664, 747, 760, 789, 816, 817, 827, 988
Bme18I GGWCC 3 cut(s) 587, 763, 981
BmeT110I CYCGRG 1 cut(s) 815
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 4 cut(s) 587, 666, 763, 981
BmrFI CCNGG 8 cut(s) 664, 747, 760, 789, 816, 817, 827, 988
BmsI GCATC 2 cut(s) 688, 962
BpiI GAAGAC 3 cut(s) 29, 265, 1249
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 374, 1258
BpuMI CCSGG 6 cut(s) 747, 760, 789, 816, 817, 827
BsaBI GATNNNNATC 1 cut(s) 308
BsaHI GRCGYC 4 cut(s) 168, 458, 483, 732
BsaJI CCNNGG 8 cut(s) 229, 235, 336, 537, 663, 759, 815, 987
BsaWI WCCGGW 2 cut(s) 326, 611
BsaXI ACNNNNNCTCC 4 cut(s) 533, 563, 1047, 1077
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 815, 990
Bse1I ACTGG 1 cut(s) 851
Bse3DI GCAATG 1 cut(s) 1157
Bse8I GATNNNNATC 1 cut(s) 308
BseBI CCWGG 2 cut(s) 664, 988
BseDI CCNNGG 8 cut(s) 229, 235, 336, 537, 663, 759, 815, 987
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 3 cut(s) 298, 815, 990
BseMI GCAATG 1 cut(s) 1157
BseMII CTCAG 2 cut(s) 824, 1007
BseNI ACTGG 1 cut(s) 851
BseRI GAGGAG 2 cut(s) 92, 526
BseXI GCAGC 3 cut(s) 787, 796, 1180
Bsh1236I CGCG 1 cut(s) 929
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 5 cut(s) 234, 323, 608, 668, 802
BshNI GGYRCC 6 cut(s) 457, 482, 520, 659, 731, 866
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 815
BsiSI CCGG 8 cut(s) 327, 447, 612, 747, 759, 788, 816, 827
BslFI GGGAC 3 cut(s) 100, 529, 749
BslI CCNNNNNNNGG 3 cut(s) 298, 815, 990
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 3 cut(s) 100, 529, 749
BsmI GAATGC 2 cut(s) 632, 904
BsnI GGCC 5 cut(s) 234, 323, 608, 668, 802
BsoBI CYCGRG 1 cut(s) 815
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 2 cut(s) 303, 408
BspANI GGCC 5 cut(s) 234, 323, 608, 668, 802
BspCNI CTCAG 2 cut(s) 823, 1008
BspFNI CGCG 1 cut(s) 929
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 6 cut(s) 457, 482, 520, 659, 731, 866
BsrBI CCGCTC 3 cut(s) 267, 671, 1137
BsrDI GCAATG 1 cut(s) 1157
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 1 cut(s) 851
BssECI CCNNGG 8 cut(s) 229, 235, 336, 537, 663, 759, 815, 987
BssMI GATC 2 cut(s) 303, 408
BssNI GRCGYC 4 cut(s) 168, 458, 483, 732
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 664, 988
Bst4CI ACNGT 6 cut(s) 200, 427, 520, 728, 877, 924
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 4 cut(s) 168, 458, 483, 732
BstAPI GCANNNNNTGC 1 cut(s) 781
BstAUI TGTACA 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 218, 366, 846
BstDEI CTNAG 4 cut(s) 637, 810, 1016, 1091
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 929
BstH2I RGCGCY 3 cut(s) 461, 486, 735
BstHHI GCGC 5 cut(s) 388, 460, 485, 734, 850
BstKTI GATC 2 cut(s) 306, 411
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 2 cut(s) 303, 408
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 9 cut(s) 240, 374, 383, 480, 563, 668, 781, 784, 1168
BstNI CCWGG 2 cut(s) 664, 988
BstNSI RCATGY 2 cut(s) 796, 848
BstSCI CCNGG 8 cut(s) 662, 745, 758, 787, 814, 815, 825, 986
BstUI CGCG 1 cut(s) 929
BstV1I GCAGC 3 cut(s) 787, 796, 1180
BstV2I GAAGAC 3 cut(s) 29, 265, 1249
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 5 cut(s) 234, 323, 608, 668, 802
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 3 cut(s) 218, 366, 846
CfoI GCGC 5 cut(s) 388, 460, 485, 734, 850
Cfr13I GGNCC 4 cut(s) 587, 666, 763, 981
Cfr9I CCCGGG 1 cut(s) 815
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 5 cut(s) 436, 468, 643, 823, 1254
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 4 cut(s) 112, 793, 845, 906
CviQI GTAC 5 cut(s) 436, 468, 643, 823, 1254
DdeI CTNAG 4 cut(s) 637, 810, 1016, 1091
DinI GGCGCC 3 cut(s) 459, 484, 733
DpnI GATC 2 cut(s) 305, 410
DpnII GATC 2 cut(s) 303, 408
DrdI GACNNNNNNGTC 2 cut(s) 128, 419
DseDI GACNNNNNNGTC 2 cut(s) 128, 419
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 3 cut(s) 173, 268, 991
Eco130I CCWWGG 1 cut(s) 336
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 587, 763, 981
Eco57I CTGAAG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 815
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 587, 763
EcoRII CCWGG 2 cut(s) 662, 986
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 336
EgeI GGCGCC 3 cut(s) 459, 484, 733
EheI GGCGCC 3 cut(s) 459, 484, 733
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 115, 796, 848, 909
FaiI YATR 8 cut(s) 113, 794, 846, 862, 907, 934, 1026, 1142
FalI AAGNNNNNCTT 2 cut(s) 1234, 1266
FaqI GGGAC 3 cut(s) 100, 529, 749
FatI CATG 4 cut(s) 111, 792, 844, 905
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 8 cut(s) 241, 441, 444, 481, 669, 776, 785, 1169
Fsp4HI GCNGC 8 cut(s) 241, 441, 444, 481, 669, 776, 785, 1169
FspBI CTAG 1 cut(s) 593
GlaI GCGC 5 cut(s) 387, 459, 484, 733, 849
GluI GCNGC 8 cut(s) 241, 441, 444, 481, 669, 776, 785, 1169
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 3 cut(s) 461, 486, 735
HaeIII GGCC 5 cut(s) 234, 323, 608, 668, 802
HapII CCGG 8 cut(s) 327, 447, 612, 747, 759, 788, 816, 827
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 5 cut(s) 388, 460, 485, 734, 850
Hin1I GRCGYC 4 cut(s) 168, 458, 483, 732
Hin1II CATG 4 cut(s) 115, 796, 848, 909
Hin6I GCGC 5 cut(s) 386, 458, 483, 732, 848
HinP1I GCGC 5 cut(s) 386, 458, 483, 732, 848
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 5 cut(s) 176, 257, 348, 420, 910
HpaI GTTAAC 1 cut(s) 1111
HpaII CCGG 8 cut(s) 327, 447, 612, 747, 759, 788, 816, 827
HphI GGTGA 7 cut(s) 184, 199, 346, 415, 761, 1047, 1166
Hpy166II GTNNAC 2 cut(s) 643, 1111
Hpy188I TCNGA 2 cut(s) 541, 572
Hpy188III TCNNGA 2 cut(s) 514, 918
Hpy8I GTNNAC 2 cut(s) 643, 1111
Hpy99I CGWCG 9 cut(s) 44, 89, 134, 155, 170, 299, 374, 416, 515
HpyAV CCTTC 6 cut(s) 69, 292, 367, 578, 650, 709
HpyCH4III ACNGT 6 cut(s) 200, 427, 520, 728, 877, 924
HpyCH4IV ACGT 4 cut(s) 42, 168, 189, 510
HpyCH4V TGCA 4 cut(s) 632, 784, 1168, 1205
HpyF10VI GCNNNNNNNGC 9 cut(s) 240, 374, 383, 480, 563, 668, 781, 784, 1168
HpyF3I CTNAG 4 cut(s) 637, 810, 1016, 1091
HpySE526I ACGT 4 cut(s) 42, 168, 189, 510
Hsp92I GRCGYC 4 cut(s) 168, 458, 483, 732
Hsp92II CATG 4 cut(s) 115, 796, 848, 909
HspAI GCGC 5 cut(s) 386, 458, 483, 732, 848
KasI GGCGCC 3 cut(s) 457, 482, 731
KflI GGGWCCC 1 cut(s) 763
KspAI GTTAAC 1 cut(s) 1111
Kzo9I GATC 2 cut(s) 303, 408
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 272, 968, 1134
Lsp1109I GCAGC 3 cut(s) 787, 796, 1180
LweI GCATC 2 cut(s) 688, 962
MaeI CTAG 1 cut(s) 593
MaeII ACGT 4 cut(s) 42, 168, 189, 510
MaeIII GTNAC 8 cut(s) 190, 200, 352, 421, 427, 855, 1172, 1222
MalI GATC 2 cut(s) 305, 410
MbiI CCGCTC 3 cut(s) 267, 671, 1137
MboI GATC 2 cut(s) 303, 408
MluCI AATT 3 cut(s) 65, 381, 1178
Mly113I GGCGCC 3 cut(s) 458, 483, 732
MlyI GAGTC 2 cut(s) 429, 919
MmeI TCCRAC 1 cut(s) 909
MseI TTAA 3 cut(s) 68, 1110, 1264
MspI CCGG 8 cut(s) 327, 447, 612, 747, 759, 788, 816, 827
MspR9I CCNGG 8 cut(s) 664, 747, 760, 789, 816, 817, 827, 988
Mva1269I GAATGC 2 cut(s) 632, 904
MvaI CCWGG 2 cut(s) 664, 988
MvnI CGCG 1 cut(s) 929
MwoI GCNNNNNNNGC 9 cut(s) 240, 374, 383, 480, 563, 668, 781, 784, 1168
NarI GGCGCC 3 cut(s) 458, 483, 732
NciI CCSGG 6 cut(s) 747, 760, 789, 816, 817, 827
NdeII GATC 2 cut(s) 303, 408
NlaIII CATG 4 cut(s) 115, 796, 848, 909
NmeAIII GCCGAG 2 cut(s) 216, 473
NmuCI GTSAC 7 cut(s) 190, 200, 352, 421, 427, 855, 1172
NspI RCATGY 2 cut(s) 796, 848
PaeI GCATGC 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 8 cut(s) 36, 126, 138, 147, 291, 303, 312, 483
PctI GAATGC 2 cut(s) 632, 904
PfeI GAWTC 3 cut(s) 176, 257, 348
PkrI GCNGC 8 cut(s) 242, 442, 445, 482, 670, 777, 786, 1170
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 2 cut(s) 428, 918
PluTI GGCGCC 3 cut(s) 461, 486, 735
PpsI GAGTC 2 cut(s) 428, 918
PpuMI RGGWCCY 2 cut(s) 587, 763
Psp5II RGGWCCY 2 cut(s) 587, 763
Psp6I CCWGG 2 cut(s) 662, 986
PspGI CCWGG 2 cut(s) 662, 986
PspPI GGNCC 4 cut(s) 587, 666, 763, 981
PspPPI RGGWCCY 2 cut(s) 587, 763
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 5 cut(s) 437, 469, 644, 824, 1255
RsaNI GTAC 5 cut(s) 436, 468, 643, 823, 1254
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 3 cut(s) 68, 1110, 1264
SatI GCNGC 8 cut(s) 241, 441, 444, 481, 669, 776, 785, 1169
Sau3AI GATC 2 cut(s) 303, 408
Sau96I GGNCC 4 cut(s) 587, 666, 763, 981
SchI GAGTC 2 cut(s) 429, 919
ScrFI CCNGG 8 cut(s) 664, 747, 760, 789, 816, 817, 827, 988
SfaNI GCATC 2 cut(s) 688, 962
SfoI GGCGCC 3 cut(s) 459, 484, 733
SinI GGWCC 3 cut(s) 587, 763, 981
SmaI CCCGGG 1 cut(s) 817
SmlI CTYRAG 2 cut(s) 389, 1237
SmoI CTYRAG 2 cut(s) 389, 1237
SphI GCATGC 1 cut(s) 848
SrfI GCCCGGGC 1 cut(s) 817
Sse9I AATT 3 cut(s) 65, 381, 1178
SspDI GGCGCC 3 cut(s) 457, 482, 731
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 8 cut(s) 662, 745, 758, 787, 814, 815, 825, 986
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 6 cut(s) 200, 427, 520, 728, 877, 924
TaiI ACGT 4 cut(s) 45, 171, 192, 513
TaqI TCGA 7 cut(s) 47, 132, 141, 174, 294, 315, 411
TaqII GACCGA 1 cut(s) 665
TasI AATT 3 cut(s) 65, 381, 1178
TatI WGTACW 1 cut(s) 642
TauI GCSGC 5 cut(s) 243, 443, 446, 483, 671
TfiI GAWTC 3 cut(s) 176, 257, 348
Tru1I TTAA 3 cut(s) 68, 1110, 1264
Tru9I TTAA 3 cut(s) 68, 1110, 1264
TscAI CASTG 1 cut(s) 858
TseFI GTSAC 7 cut(s) 190, 200, 352, 421, 427, 855, 1172
TseI GCWGC 3 cut(s) 775, 784, 1168
Tsp45I GTSAC 7 cut(s) 190, 200, 352, 421, 427, 855, 1172
TspGWI ACGGA 4 cut(s) 41, 218, 259, 360
TspMI CCCGGG 1 cut(s) 815
TspRI CASTG 1 cut(s) 858
VpaK11BI GGWCC 3 cut(s) 587, 763, 981
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 2 cut(s) 796, 848
XcmI CCANNNNNNNNNTGG 2 cut(s) 858, 1184
XmaI CCCGGG 1 cut(s) 815
XspI CTAG 1 cut(s) 593
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.