Rmu_sc0013975.1_g000001

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013975.1
OG0000611
Physical Location & Seq
Forward (+)
259 .. 1413
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013975.1_g000001.1.cds

Sequence Viewer

Length: 579 bp
atggacttcacaaagaagcggaagacggacgagaacggcgacgtttcgacggccccgccttcccaattcacaaccctaacccccgacgacttccgcaaactcctccagcccatgtcccacgaccacctcgtcgaaatcctcgaaaacgccgtcgttcgccaccccgacgtcctcgaatccctccgccacgtcaccaaccgtgacctcaccctccgcaagctcttcgtccgtggcctcggcggcgacaccaccaccgattcgctccgctccgtcttctccgccttcggcgacctcgacgaggccatcgtcatcttcgacaaggccaccggaaaatccaagggctacggattcgtcaccttcaagcacgccgacgaagccctaattgcgctcaaggaaccgagcaagaagatcgacggcagagtcaccgtcacgcagtacgccgccgccggacattcggcgccgttcagtagcagcaacggtggcgccgatgtctcggcgaggaagatttacgtcgggacggtgccgtttgatatctcctcggagagattgttgtctgcgagaggttatgatattgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

192

Amino Acids

21.03

Weight (kDa)

6.3

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 419
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 3 cut(s) 457, 482, 520
AccBSI CCGCTC 1 cut(s) 267
AcyI GRCGYC 3 cut(s) 168, 458, 483
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 361
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 496
AoxI GGCC 4 cut(s) 51, 232, 300, 321
ApeKI GCWGC 1 cut(s) 471
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 3 cut(s) 388, 460, 485
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 4 cut(s) 184, 199, 346, 415
BanI GGYRCC 3 cut(s) 457, 482, 520
BbsI GAAGAC 2 cut(s) 29, 265
BbvI GCAGC 1 cut(s) 483
BccI CCATC 1 cut(s) 311
BceAI ACGGC 6 cut(s) 52, 66, 134, 430, 445, 508
BcgI CGANNNNNNTGC 4 cut(s) 205, 239, 391, 425
BcoDI GTCTC 1 cut(s) 496
BfoI RGCGCY 2 cut(s) 461, 486
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 4 cut(s) 241, 441, 444, 472
BlsI GCNGC 4 cut(s) 242, 442, 445, 473
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 5 cut(s) 54, 396, 459, 484, 522
BpiI GAAGAC 2 cut(s) 29, 265
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 374
BsaHI GRCGYC 3 cut(s) 168, 458, 483
BsaJI CCNNGG 4 cut(s) 229, 235, 336, 537
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseDI CCNNGG 4 cut(s) 229, 235, 336, 537
BseLI CCNNNNNNNGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 92, 526
BseXI GCAGC 1 cut(s) 483
BshFI GGCC 4 cut(s) 53, 234, 302, 323
BshNI GGYRCC 3 cut(s) 457, 482, 520
BsiSI CCGG 2 cut(s) 327, 447
BslFI GGGAC 2 cut(s) 100, 529
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 2 cut(s) 100, 529
BsnI GGCC 4 cut(s) 53, 234, 302, 323
Bsp143I GATC 1 cut(s) 408
BspANI GGCC 4 cut(s) 53, 234, 302, 323
BspLI GGNNCC 5 cut(s) 54, 396, 459, 484, 522
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 3 cut(s) 457, 482, 520
BsrBI CCGCTC 1 cut(s) 267
BssECI CCNNGG 4 cut(s) 229, 235, 336, 537
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 3 cut(s) 168, 458, 483
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 4 cut(s) 200, 427, 479, 520
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 3 cut(s) 168, 458, 483
BstC8I GCNNGC 2 cut(s) 218, 366
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 296
BstH2I RGCGCY 2 cut(s) 461, 486
BstHHI GCGC 3 cut(s) 388, 460, 485
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 4 cut(s) 240, 374, 383, 480
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 2 cut(s) 29, 265
BsuRI GGCC 4 cut(s) 53, 234, 302, 323
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 218, 366
CfoI GCGC 3 cut(s) 388, 460, 485
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 436
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 53, 109, 220, 234, 302, 323, 342, 377
CviKI_1 RGCY 8 cut(s) 53, 109, 220, 234, 302, 323, 342, 377
CviQI GTAC 1 cut(s) 436
DinI GGCGCC 2 cut(s) 459, 484
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DrdI GACNNNNNNGTC 2 cut(s) 128, 419
DseDI GACNNNNNNGTC 2 cut(s) 128, 419
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 2 cut(s) 173, 268
Eco130I CCWWGG 1 cut(s) 336
Eco32I GATATC 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 336
EgeI GGCGCC 2 cut(s) 459, 484
EheI GGCGCC 2 cut(s) 459, 484
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 115
FaiI YATR 2 cut(s) 113, 567
FaqI GGGAC 2 cut(s) 100, 529
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 241, 441, 444, 472
Fsp4HI GCNGC 4 cut(s) 241, 441, 444, 472
GlaI GCGC 3 cut(s) 387, 459, 484
GluI GCNGC 4 cut(s) 241, 441, 444, 472
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 2 cut(s) 461, 486
HaeIII GGCC 4 cut(s) 53, 234, 302, 323
HapII CCGG 2 cut(s) 327, 447
HhaI GCGC 3 cut(s) 388, 460, 485
Hin1I GRCGYC 3 cut(s) 168, 458, 483
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 3 cut(s) 386, 458, 483
HinP1I GCGC 3 cut(s) 386, 458, 483
HinfI GANTC 4 cut(s) 176, 257, 348, 420
HpaII CCGG 2 cut(s) 327, 447
HphI GGTGA 4 cut(s) 184, 199, 346, 415
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 1 cut(s) 514
HpyAV CCTTC 3 cut(s) 69, 292, 367
HpyCH4III ACNGT 4 cut(s) 200, 427, 479, 520
HpyCH4IV ACGT 4 cut(s) 42, 168, 189, 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 374, 383, 480
HpySE526I ACGT 4 cut(s) 42, 168, 189, 510
Hsp92I GRCGYC 3 cut(s) 168, 458, 483
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 3 cut(s) 386, 458, 483
KasI GGCGCC 2 cut(s) 457, 482
Kzo9I GATC 1 cut(s) 408
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 267, 272
LpnPI CCDG 3 cut(s) 119, 340, 460
Lsp1109I GCAGC 1 cut(s) 483
MaeII ACGT 4 cut(s) 42, 168, 189, 510
MaeIII GTNAC 5 cut(s) 190, 200, 352, 421, 427
MalI GATC 1 cut(s) 410
MbiI CCGCTC 1 cut(s) 267
MboI GATC 1 cut(s) 408
MboII GAAGA 6 cut(s) 34, 214, 265, 304, 418, 514
MluCI AATT 2 cut(s) 65, 381
Mly113I GGCGCC 2 cut(s) 458, 483
MlyI GAGTC 1 cut(s) 429
MspI CCGG 2 cut(s) 327, 447
MwoI GCNNNNNNNGC 4 cut(s) 240, 374, 383, 480
NarI GGCGCC 2 cut(s) 458, 483
NdeII GATC 1 cut(s) 408
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 5 cut(s) 54, 396, 459, 484, 522
NmeAIII GCCGAG 2 cut(s) 216, 473
NmuCI GTSAC 5 cut(s) 190, 200, 352, 421, 427
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 8 cut(s) 36, 126, 138, 147, 291, 303, 312, 483
PfeI GAWTC 3 cut(s) 176, 257, 348
PkrI GCNGC 4 cut(s) 242, 442, 445, 473
PleI GAGTC 1 cut(s) 428
PluTI GGCGCC 2 cut(s) 461, 486
PpsI GAGTC 1 cut(s) 428
PspN4I GGNNCC 5 cut(s) 54, 396, 459, 484, 522
PspPI GGNCC 1 cut(s) 52
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 227
SatI GCNGC 4 cut(s) 241, 441, 444, 472
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 429
SfoI GGCGCC 2 cut(s) 459, 484
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 65, 381
SspDI GGCGCC 2 cut(s) 457, 482
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 4 cut(s) 200, 427, 479, 520
TaiI ACGT 4 cut(s) 45, 171, 192, 513
TaqI TCGA 7 cut(s) 47, 132, 141, 174, 294, 315, 411
TasI AATT 2 cut(s) 65, 381
TauI GCSGC 3 cut(s) 243, 443, 446
TfiI GAWTC 3 cut(s) 176, 257, 348
TseFI GTSAC 5 cut(s) 190, 200, 352, 421, 427
TseI GCWGC 1 cut(s) 471
Tsp45I GTSAC 5 cut(s) 190, 200, 352, 421, 427
TspGWI ACGGA 4 cut(s) 41, 218, 259, 360
XagI CCTNNNNNAGG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.