RLG00000031772

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000611
Physical Location & Seq
Forward (+)
8141594 .. 8143724
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031772

Sequence Viewer

Length: 1068 bp
ATGGACTTCACAAAGAAGCGGAAGACGGACGAGAACGGCGACGTTTCGACGGCCCCGCCTTCCCAATCCACAACCCTAACCCCCGACGACTTCCGCAAACTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGAATCCCTCCGCCACGTCACCAACCGTGACCTCACCCTCCGCAAGCTCTTCGTCCGCGGCCTCTGCGCCGACACCACCACCGATTCGCTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTCGACGAGGCCATCGTCATCTTCGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCTGCCGCCGGACATTCGGCGCCGTTCAGTAGCAGCAACGGCGGCGCTGATGTCTCGGCGAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGCCCCCTAGGGTTTGATAAGGCCACCGGAAAATCAAAGGGCTTTGCTTTCTTCGTTTACAAGACCGAAGAAGGTGCTAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGGTCATCATGTGACTTGCAAATTAGCTGTGGATAACAAGAAGGGTAAACACGGTGGCGCTCAAGGGCCTCCCGGTGATAATTCCGGCGTCCCTCCTCCGCAGCAAATGCAGCCGGGCATGTTTAGGCCACAGCCTCAGCCGGGGCAGTACCCGGGTTATCCTGGTGGGCATGAGCCAGTGGTTCCTAGACAGTTCGCGCTATGGGGTTCCTCCACCACAGCATCATCAGGCTCCCTCAATGCCAAGAGGACCACCTGGAGGAATGTATCCGCCACCTTACTACTGAGGTCCTTGAGAAGCTTCTTGGGCGCAAATGCTTTAAATGGTTATGGTGATTTCATGATTGCAGACAATGAATCTTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

356

Amino Acids

38.31

Weight (kDa)

7.79

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 74 - 141 2.1e-14 RNA recognition motif
RRM_7 PF16367 167 - 227 3.8e-06 RNA recognition motif
RRM_1 PF00076 169 - 226 1.5e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 419
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 2 cut(s) 457, 520
AccBSI CCGCTC 2 cut(s) 267, 671
AccII CGCG 2 cut(s) 231, 896
AcyI GRCGYC 3 cut(s) 168, 458, 786
AfaI GTAC 2 cut(s) 437, 848
AfiI CCNNNNNNNGG 3 cut(s) 298, 839, 957
AgsI TTSAA 3 cut(s) 361, 581, 688
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 859, 953
AluBI AGCT 3 cut(s) 220, 725, 999
AluI AGCT 3 cut(s) 220, 725, 999
Alw26I GTCTC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 850
AoxI GGCC 9 cut(s) 51, 232, 300, 321, 586, 606, 666, 764, 824
ApeKI GCWGC 4 cut(s) 440, 471, 799, 808
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspA2I CCTAGG 1 cut(s) 592
AspLEI GCGC 7 cut(s) 242, 388, 460, 485, 758, 898, 1010
AspS9I GGNCC 6 cut(s) 52, 587, 666, 764, 948, 987
AsuC2I CCSGG 5 cut(s) 771, 813, 840, 851, 852
AsuHPI GGTGA 6 cut(s) 184, 199, 346, 415, 785, 1043
AvaI CYCGRG 1 cut(s) 850
AvaII GGWCC 2 cut(s) 948, 987
AvrII CCTAGG 1 cut(s) 592
BanI GGYRCC 2 cut(s) 457, 520
BbsI GAAGAC 2 cut(s) 29, 265
BbvCI CCTCAGC 1 cut(s) 834
BbvI GCAGC 4 cut(s) 427, 483, 811, 820
BccI CCATC 2 cut(s) 311, 692
BceAI ACGGC 7 cut(s) 52, 66, 134, 430, 445, 493, 508
BcgI CGANNNNNNTGC 6 cut(s) 205, 239, 391, 425, 641, 675
BciT130I CCWGG 2 cut(s) 861, 955
BciVI GTATCC 1 cut(s) 976
BcnI CCSGG 5 cut(s) 771, 813, 840, 851, 852
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 3 cut(s) 593, 663, 885
BfoI RGCGCY 3 cut(s) 461, 486, 759
BfuI GTATCC 1 cut(s) 976
BisI GCNGC 8 cut(s) 232, 441, 444, 472, 481, 669, 800, 809
BlnI CCTAGG 1 cut(s) 592
BlsI GCNGC 8 cut(s) 233, 442, 445, 473, 482, 670, 801, 810
Bme1390I CCNGG 7 cut(s) 771, 813, 840, 851, 852, 861, 955
Bme18I GGWCC 2 cut(s) 948, 987
BmeT110I CYCGRG 1 cut(s) 850
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 6 cut(s) 52, 587, 666, 764, 948, 987
BmiI GGNNCC 8 cut(s) 54, 396, 459, 522, 589, 882, 907, 931
BmrFI CCNGG 7 cut(s) 771, 813, 840, 851, 852, 861, 955
BmsI GCATC 1 cut(s) 929
BpiI GAAGAC 2 cut(s) 29, 265
BpmI CTGGAG 2 cut(s) 89, 976
Bpu10I CCTNAGC 1 cut(s) 834
BpuEI CTTGAG 3 cut(s) 374, 744, 1012
BpuMI CCSGG 5 cut(s) 771, 813, 840, 851, 852
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 3 cut(s) 168, 458, 786
BsaJI CCNNGG 6 cut(s) 229, 336, 537, 592, 839, 850
BsaWI WCCGGW 2 cut(s) 326, 611
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 839, 957
Bse1I ACTGG 1 cut(s) 875
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 2 cut(s) 861, 955
BseDI CCNNGG 6 cut(s) 229, 336, 537, 592, 839, 850
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 3 cut(s) 298, 839, 957
BseMII CTCAG 2 cut(s) 848, 974
BseNI ACTGG 1 cut(s) 875
BseRI GAGGAG 3 cut(s) 92, 526, 783
BseXI GCAGC 4 cut(s) 427, 483, 811, 820
Bsh1236I CGCG 2 cut(s) 231, 896
BshFI GGCC 9 cut(s) 53, 234, 302, 323, 588, 608, 668, 766, 826
BshNI GGYRCC 2 cut(s) 457, 520
BsiHKCI CYCGRG 1 cut(s) 850
BsiSI CCGG 8 cut(s) 327, 447, 612, 771, 783, 812, 839, 851
BslFI GGGAC 3 cut(s) 100, 529, 773
BslI CCNNNNNNNGG 3 cut(s) 298, 839, 957
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 3 cut(s) 100, 529, 773
BsnI GGCC 9 cut(s) 53, 234, 302, 323, 588, 608, 668, 766, 826
BsoBI CYCGRG 1 cut(s) 850
Bsp143I GATC 1 cut(s) 408
BspANI GGCC 9 cut(s) 53, 234, 302, 323, 588, 608, 668, 766, 826
BspCNI CTCAG 2 cut(s) 847, 975
BspFNI CGCG 2 cut(s) 231, 896
BspHI TCATGA 1 cut(s) 1038
BspLI GGNNCC 8 cut(s) 54, 396, 459, 522, 589, 882, 907, 931
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 2 cut(s) 457, 520
BsrBI CCGCTC 2 cut(s) 267, 671
BsrI ACTGG 1 cut(s) 875
BssECI CCNNGG 6 cut(s) 229, 336, 537, 592, 839, 850
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 3 cut(s) 168, 458, 786
BssT1I CCWWGG 2 cut(s) 336, 592
Bst2UI CCWGG 2 cut(s) 861, 955
Bst4CI ACNGT 5 cut(s) 200, 427, 520, 752, 891
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 3 cut(s) 168, 458, 786
BstAPI GCANNNNNTGC 1 cut(s) 805
BstC8I GCNNGC 2 cut(s) 218, 366
BstDEI CTNAG 2 cut(s) 834, 983
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 296
BstFNI CGCG 2 cut(s) 231, 896
BstH2I RGCGCY 3 cut(s) 461, 486, 759
BstHHI GCGC 7 cut(s) 242, 388, 460, 485, 758, 898, 1010
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 1 cut(s) 408
BstNI CCWGG 2 cut(s) 861, 955
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 7 cut(s) 769, 811, 838, 849, 850, 859, 953
BstUI CGCG 2 cut(s) 231, 896
BstV1I GCAGC 4 cut(s) 427, 483, 811, 820
BstV2I GAAGAC 2 cut(s) 29, 265
BsuI GTATCC 1 cut(s) 976
BsuRI GGCC 9 cut(s) 53, 234, 302, 323, 588, 608, 668, 766, 826
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 2 cut(s) 218, 366
CciI TCATGA 1 cut(s) 1038
CfoI GCGC 7 cut(s) 242, 388, 460, 485, 758, 898, 1010
Cfr13I GGNCC 6 cut(s) 52, 587, 666, 764, 948, 987
Cfr42I CCGCGG 1 cut(s) 232
Cfr9I CCCGGG 1 cut(s) 850
CseI GACGC 1 cut(s) 775
Csp6I GTAC 2 cut(s) 436, 847
CviAII CATG 5 cut(s) 112, 707, 817, 869, 1039
CviQI GTAC 2 cut(s) 436, 847
DdeI CTNAG 2 cut(s) 834, 983
DinI GGCGCC 1 cut(s) 459
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DraI TTTAAA 1 cut(s) 1020
DrdI GACNNNNNNGTC 2 cut(s) 128, 419
DseDI GACNNNNNNGTC 2 cut(s) 128, 419
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 3 cut(s) 173, 268, 958
Eco130I CCWWGG 2 cut(s) 336, 592
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 2 cut(s) 948, 987
Eco88I CYCGRG 1 cut(s) 850
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 3 cut(s) 587, 764, 987
EcoRII CCWGG 2 cut(s) 859, 953
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 336, 592
EgeI GGCGCC 1 cut(s) 459
EheI GGCGCC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 336, 592
FaeI CATG 5 cut(s) 115, 710, 820, 872, 1042
FaiI YATR 7 cut(s) 113, 708, 818, 870, 901, 1029, 1040
FaqI GGGAC 3 cut(s) 100, 529, 773
FatI CATG 5 cut(s) 111, 706, 816, 868, 1038
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 8 cut(s) 232, 441, 444, 472, 481, 669, 800, 809
Fsp4HI GCNGC 8 cut(s) 232, 441, 444, 472, 481, 669, 800, 809
FspBI CTAG 3 cut(s) 593, 663, 885
GlaI GCGC 7 cut(s) 241, 387, 459, 484, 757, 897, 1009
GluI GCNGC 8 cut(s) 232, 441, 444, 472, 481, 669, 800, 809
GsuI CTGGAG 2 cut(s) 89, 976
HaeII RGCGCY 3 cut(s) 461, 486, 759
HaeIII GGCC 9 cut(s) 53, 234, 302, 323, 588, 608, 668, 766, 826
HapII CCGG 8 cut(s) 327, 447, 612, 771, 783, 812, 839, 851
HgaI GACGC 1 cut(s) 775
HhaI GCGC 7 cut(s) 242, 388, 460, 485, 758, 898, 1010
Hin1I GRCGYC 3 cut(s) 168, 458, 786
Hin1II CATG 5 cut(s) 115, 710, 820, 872, 1042
Hin6I GCGC 7 cut(s) 240, 386, 458, 483, 756, 896, 1008
HinP1I GCGC 7 cut(s) 240, 386, 458, 483, 756, 896, 1008
HindIII AAGCTT 1 cut(s) 997
HinfI GANTC 5 cut(s) 176, 257, 348, 420, 1055
HpaII CCGG 8 cut(s) 327, 447, 612, 771, 783, 812, 839, 851
HphI GGTGA 6 cut(s) 184, 199, 346, 415, 785, 1043
Hpy166II GTNNAC 2 cut(s) 643, 746
Hpy188I TCNGA 2 cut(s) 541, 572
Hpy188III TCNNGA 2 cut(s) 514, 1039
Hpy8I GTNNAC 2 cut(s) 643, 746
HpyAV CCTTC 6 cut(s) 69, 292, 367, 578, 650, 733
HpyCH4III ACNGT 5 cut(s) 200, 427, 520, 752, 891
HpyCH4IV ACGT 4 cut(s) 42, 168, 189, 510
HpyCH4V TGCA 3 cut(s) 717, 808, 1046
HpyF3I CTNAG 2 cut(s) 834, 983
HpySE526I ACGT 4 cut(s) 42, 168, 189, 510
Hsp92I GRCGYC 3 cut(s) 168, 458, 786
Hsp92II CATG 5 cut(s) 115, 710, 820, 872, 1042
HspAI GCGC 7 cut(s) 240, 386, 458, 483, 756, 896, 1008
KasI GGCGCC 1 cut(s) 457
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 1 cut(s) 408
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 267, 272, 935
Lsp1109I GCAGC 4 cut(s) 427, 483, 811, 820
LweI GCATC 1 cut(s) 929
MaeI CTAG 3 cut(s) 593, 663, 885
MaeII ACGT 4 cut(s) 42, 168, 189, 510
MaeIII GTNAC 6 cut(s) 190, 200, 352, 421, 427, 709
MalI GATC 1 cut(s) 410
MbiI CCGCTC 2 cut(s) 267, 671
MboI GATC 1 cut(s) 408
MboII GAAGA 9 cut(s) 34, 214, 265, 304, 418, 514, 593, 628, 665
MluCI AATT 3 cut(s) 381, 719, 778
Mly113I GGCGCC 1 cut(s) 458
MlyI GAGTC 1 cut(s) 429
MseI TTAA 1 cut(s) 1019
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 8 cut(s) 327, 447, 612, 771, 783, 812, 839, 851
MspR9I CCNGG 7 cut(s) 771, 813, 840, 851, 852, 861, 955
MvaI CCWGG 2 cut(s) 861, 955
MvnI CGCG 2 cut(s) 231, 896
NarI GGCGCC 1 cut(s) 458
NciI CCSGG 5 cut(s) 771, 813, 840, 851, 852
NdeII GATC 1 cut(s) 408
NlaIII CATG 5 cut(s) 115, 710, 820, 872, 1042
NlaIV GGNNCC 8 cut(s) 54, 396, 459, 522, 589, 882, 907, 931
NmeAIII GCCGAG 1 cut(s) 473
NmuCI GTSAC 6 cut(s) 190, 200, 352, 421, 427, 709
NspI RCATGY 1 cut(s) 820
PagI TCATGA 1 cut(s) 1038
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 7 cut(s) 36, 126, 138, 147, 291, 303, 312
PfeI GAWTC 4 cut(s) 176, 257, 348, 1055
PkrI GCNGC 8 cut(s) 233, 442, 445, 473, 482, 670, 801, 810
PleI GAGTC 1 cut(s) 428
PluTI GGCGCC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 987
Psp5II RGGWCCY 1 cut(s) 987
Psp6I CCWGG 2 cut(s) 859, 953
PspGI CCWGG 2 cut(s) 859, 953
PspN4I GGNNCC 8 cut(s) 54, 396, 459, 522, 589, 882, 907, 931
PspPI GGNCC 6 cut(s) 52, 587, 666, 764, 948, 987
PspPPI RGGWCCY 1 cut(s) 987
RsaI GTAC 2 cut(s) 437, 848
RsaNI GTAC 2 cut(s) 436, 847
SacII CCGCGG 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 1019
SatI GCNGC 8 cut(s) 232, 441, 444, 472, 481, 669, 800, 809
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 6 cut(s) 52, 587, 666, 764, 948, 987
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 7 cut(s) 771, 813, 840, 851, 852, 861, 955
SfaNI GCATC 1 cut(s) 929
SfoI GGCGCC 1 cut(s) 459
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 2 cut(s) 948, 987
SmaI CCCGGG 1 cut(s) 852
SmlI CTYRAG 3 cut(s) 389, 759, 991
SmoI CTYRAG 3 cut(s) 389, 759, 991
Sse9I AATT 3 cut(s) 381, 719, 778
SspDI GGCGCC 1 cut(s) 457
SspMI CTAG 3 cut(s) 593, 663, 885
StyD4I CCNGG 7 cut(s) 769, 811, 838, 849, 850, 859, 953
StyI CCWWGG 2 cut(s) 336, 592
TaaI ACNGT 5 cut(s) 200, 427, 520, 752, 891
TaiI ACGT 4 cut(s) 45, 171, 192, 513
TaqI TCGA 7 cut(s) 47, 132, 141, 174, 294, 315, 411
TaqII GACCGA 1 cut(s) 665
TasI AATT 3 cut(s) 381, 719, 778
TauI GCSGC 4 cut(s) 234, 446, 483, 671
TfiI GAWTC 4 cut(s) 176, 257, 348, 1055
Tru1I TTAA 1 cut(s) 1019
Tru9I TTAA 1 cut(s) 1019
TscAI CASTG 1 cut(s) 882
TseFI GTSAC 6 cut(s) 190, 200, 352, 421, 427, 709
TseI GCWGC 4 cut(s) 440, 471, 799, 808
Tsp45I GTSAC 6 cut(s) 190, 200, 352, 421, 427, 709
TspDTI ATGAA 2 cut(s) 1027, 1068
TspGWI ACGGA 3 cut(s) 41, 259, 360
TspMI CCCGGG 1 cut(s) 850
TspRI CASTG 1 cut(s) 882
VpaK11BI GGWCC 2 cut(s) 948, 987
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 1 cut(s) 820
XmaI CCCGGG 1 cut(s) 850
XmaJI CCTAGG 1 cut(s) 592
XspI CTAG 3 cut(s) 593, 663, 885
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.