Rorug04G0451600

Belongs to the eukaryotic ribosomal protein P1 P2 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
60630549 .. 60635918
5370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0451600.1

Sequence Viewer

Length: 1122 bp
ATGTTTGGAGTTACTGCTAGTGATGGAAGTAGGAGACGTTTACCGCAATGGATGCTGGGCGGGTCATCTACTGGCCAAGAGGGGAAGTCCAGCAATGTTGAAGAAAAGGGCAACCAGCTTGAGGAAGGACTTGCTTCTCAAGAGGCAGAAACTGTGACTGCAAAACCTGGTAAAGGGATCCGGCGTCGTGAAAAGGAAACACTGGGAGAAGGCTTGCATGTTCTTCAAAAGTGCGAGGCAAAGAAAAGAAAGAGAAAATCGACTCAACAAGATGAAGAATTTGAAGGTAATGACTCAGGAGCTGTTCTAGAGAAGAAGTGTAGTGGGCGTGGGAGAAGAAAAGTTCAGGAATCTATTGCTGCAGATAGGCAAAAAGCAAAGGCTCCTGGAAAAGGGATTCATGAAAAGAAAACGTTGGGAGAGAACTCATACATTCTTGCAAAATGTGAGACAAAAAGGATTAATAGTAAAACAAATGAACAAGATACGGATTTTGATTGCAACGTCCCTGCAAGTTTTCCAGACAAGATTGGACGTGGGAGAAGAAAAGTTCAAGAAACAGCTGTCCTGAAGAGACAAGAAGCAAAGGATTCTAGCTGTGGAAGTGGTGAGGAACGAGAAGTCCAGACTTCGAGTGATGATGATGTCGAACTGACAGCAGAAGATTTAGTGATGATTGCTGAAGAGTACATAAAAGCTGATAGGAAATTAGTGCCAGAAAAAGCATCAAATCAAAAATGTGAATCAGGCAGCAGACTTGCACTAAGAGTCGCTTCCAGTAGTAAGTCAGATGATTCTATGGACTCCCAAAACTGTAACGCAAGATCACTCATCCAAGATGCTACCAGTTCTAAGCCTAACGAGAGCTCGACTAGTGAAGAAATTGCCTTGAACTCCAGTAGAACAGGGGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGCCCCTGGCTGAAGAAACCTGTCAAGAAGGAAGCGAGGACTGACATTTTGACAGACGATCTGGCATTTTCCTACAAAGTCGAATCACAAACTCATAGTAATGTTGTTAAAGAAGAAATTGCCCCCATAACGAAGAAGAAGACCAGTCTGAAAGACAAGGTGGCAATGTTTCTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

373

Amino Acids

41.1

Weight (kDa)

8.02

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 60
AclI AACGTT 1 cut(s) 413
AclWI GGATC 5 cut(s) 172, 185, 905, 918, 939
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 3 cut(s) 590, 702, 974
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 3 cut(s) 121, 173, 392
AgsI TTSAA 5 cut(s) 101, 227, 284, 554, 892
AhlI ACTAGT 1 cut(s) 872
AjiI CACGTC 1 cut(s) 536
AjnI CCWGG 3 cut(s) 166, 385, 947
AloI GAACNNNNNNTCC 4 cut(s) 606, 638, 895, 927
AluBI AGCT 6 cut(s) 118, 302, 563, 597, 698, 867
AluI AGCT 6 cut(s) 118, 302, 563, 597, 698, 867
Alw21I GWGCWC 1 cut(s) 869
Alw26I GTCTC 3 cut(s) 28, 443, 568
AlwI GGATC 5 cut(s) 172, 185, 905, 918, 939
AlwNI CAGNNNCTG 2 cut(s) 152, 302
AoxI GGCC 2 cut(s) 73, 943
ApeKI GCWGC 2 cut(s) 359, 750
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 973, 1005
AseI ATTAAT 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 944
AsuHPI GGTGA 1 cut(s) 620
BalI TGGCCA 1 cut(s) 75
BamHI GGATCC 2 cut(s) 177, 910
BanII GRGCYC 1 cut(s) 869
BbsI GAAGAC 1 cut(s) 1088
Bbv12I GWGCWC 1 cut(s) 869
BbvI GCAGC 2 cut(s) 346, 762
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 3 cut(s) 168, 387, 949
BcoDI GTCTC 3 cut(s) 28, 443, 568
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 4 cut(s) 18, 308, 594, 873
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 2 cut(s) 360, 751
BlsI GCNGC 2 cut(s) 361, 752
Bme1390I CCNGG 3 cut(s) 168, 387, 949
BmgBI CACGTC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 944
BmiI GGNNCC 4 cut(s) 179, 384, 912, 946
BmrFI CCNGG 3 cut(s) 168, 387, 949
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 42, 734, 829
BmuI ACTGGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 1088
BpmI CTGGAG 1 cut(s) 880
Bpu10I CCTNAGC 1 cut(s) 918
BpuEI CTTGAG 2 cut(s) 123, 140
BsaHI GRCGYC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 947
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 173, 392
Bse1I ACTGG 6 cut(s) 76, 207, 777, 846, 897, 1086
Bse3DI GCAATG 3 cut(s) 53, 100, 1113
BseBI CCWGG 3 cut(s) 168, 387, 949
BseDI CCNNGG 1 cut(s) 947
BseGI GGATG 2 cut(s) 57, 831
BseLI CCNNNNNNNGG 3 cut(s) 121, 173, 392
BseMI GCAATG 3 cut(s) 53, 100, 1113
BseMII CTCAG 2 cut(s) 309, 932
BseNI ACTGG 6 cut(s) 76, 207, 777, 846, 897, 1086
BseXI GCAGC 2 cut(s) 346, 762
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 75, 945
BsiHKAI GWGCWC 1 cut(s) 869
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 121, 173, 392
BsmAI GTCTC 3 cut(s) 28, 443, 568
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 2 cut(s) 75, 945
Bsp1286I GDGCHC 1 cut(s) 869
Bsp143I GATC 5 cut(s) 177, 824, 910, 931, 1000
BspACI CCGC 2 cut(s) 44, 60
BspANI GGCC 2 cut(s) 75, 945
BspCNI CTCAG 2 cut(s) 308, 931
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 4 cut(s) 179, 384, 912, 946
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 5 cut(s) 172, 185, 905, 918, 939
BsrDI GCAATG 3 cut(s) 53, 100, 1113
BsrI ACTGG 6 cut(s) 76, 207, 777, 846, 897, 1086
BssECI CCNNGG 1 cut(s) 947
BssMI GATC 5 cut(s) 177, 824, 910, 931, 1000
BssNI GRCGYC 1 cut(s) 184
Bst2UI CCWGG 3 cut(s) 168, 387, 949
Bst4CI ACNGT 2 cut(s) 154, 815
Bst6I CTCTTC 2 cut(s) 566, 678
BstACI GRCGYC 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 4 cut(s) 295, 764, 852, 918
BstENI CCTNNNNNAGG 2 cut(s) 171, 390
BstF5I GGATG 2 cut(s) 57, 831
BstKTI GATC 5 cut(s) 180, 827, 913, 934, 1003
BstMAI GTCTC 3 cut(s) 28, 443, 568
BstMBI GATC 5 cut(s) 177, 824, 910, 931, 1000
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 3 cut(s) 168, 387, 949
BstNSI RCATGY 2 cut(s) 221, 928
BstSCI CCNGG 3 cut(s) 166, 385, 947
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 346, 762
BstV2I GAAGAC 1 cut(s) 1088
BstX2I RGATCY 3 cut(s) 177, 910, 931
BstYI RGATCY 3 cut(s) 177, 910, 931
BsuRI GGCC 2 cut(s) 75, 945
BtrI CACGTC 1 cut(s) 536
BtsCI GGATG 2 cut(s) 57, 831
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 2 cut(s) 152, 302
CciI TCATGA 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 944
CseI GACGC 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 688
CviAII CATG 3 cut(s) 218, 401, 925
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 4 cut(s) 295, 764, 852, 918
DpnI GATC 5 cut(s) 179, 826, 912, 933, 1002
DpnII GATC 5 cut(s) 177, 824, 910, 931, 1000
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 566, 678
EarI CTCTTC 2 cut(s) 566, 678
Ecl136II GAGCTC 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 869
Eco53kI GAGCTC 1 cut(s) 867
Eco57I CTGAAG 3 cut(s) 590, 702, 974
EcoICRI GAGCTC 1 cut(s) 867
EcoNI CCTNNNNNAGG 2 cut(s) 171, 390
EcoO109I RGGNCCY 1 cut(s) 944
EcoRII CCWGG 3 cut(s) 166, 385, 947
EcoT38I GRGCYC 1 cut(s) 869
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 3 cut(s) 221, 404, 928
FaiI YATR 8 cut(s) 219, 402, 430, 692, 800, 926, 1038, 1070
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 1 cut(s) 491
FatI CATG 3 cut(s) 217, 400, 924
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 360, 751
FokI GGATG 2 cut(s) 64, 818
FriOI GRGCYC 1 cut(s) 869
Fsp4HI GCNGC 2 cut(s) 360, 751
FspBI CTAG 4 cut(s) 18, 308, 594, 873
GluI GCNGC 2 cut(s) 360, 751
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 880
HaeIII GGCC 2 cut(s) 75, 945
HapII CCGG 1 cut(s) 181
HgaI GACGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 3 cut(s) 221, 404, 928
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 790, 1092
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 4 cut(s) 119, 203, 278, 964
HpyCH4III ACNGT 2 cut(s) 154, 815
HpyCH4IV ACGT 4 cut(s) 37, 413, 504, 535
HpyCH4V TGCA 7 cut(s) 161, 217, 362, 440, 501, 512, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 4 cut(s) 295, 764, 852, 918
HpySE526I ACGT 4 cut(s) 37, 413, 504, 535
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 3 cut(s) 221, 404, 928
Kzo9I GATC 5 cut(s) 177, 824, 910, 931, 1000
LmnI GCTCC 2 cut(s) 299, 388
Lsp1109I GCAGC 2 cut(s) 346, 762
LweI GCATC 3 cut(s) 42, 734, 829
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 4 cut(s) 18, 308, 594, 873
MaeII ACGT 4 cut(s) 37, 413, 504, 535
MaeIII GTNAC 3 cut(s) 10, 154, 815
MalI GATC 5 cut(s) 179, 826, 912, 933, 1002
MboI GATC 5 cut(s) 177, 824, 910, 931, 1000
MflI RGATCY 3 cut(s) 177, 910, 931
MhlI GDGCHC 1 cut(s) 869
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 4 cut(s) 278, 707, 882, 1059
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 4 cut(s) 256, 287, 777, 797
MnlI CCTC 6 cut(s) 73, 115, 136, 229, 604, 972
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 2 cut(s) 462, 1050
MslI CAYNNNNRTG 1 cut(s) 1041
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 168, 387, 949
MvaI CCWGG 3 cut(s) 168, 387, 949
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 5 cut(s) 177, 824, 910, 931, 1000
NlaIII CATG 3 cut(s) 221, 404, 928
NlaIV GGNNCC 4 cut(s) 179, 384, 912, 946
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 221, 928
PagI TCATGA 1 cut(s) 400
PfeI GAWTC 6 cut(s) 350, 397, 590, 743, 794, 1025
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 2 cut(s) 361, 752
PleI GAGTC 4 cut(s) 256, 287, 776, 797
PpsI GAGTC 4 cut(s) 256, 287, 776, 797
PshBI ATTAAT 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 869
Psp1406I AACGTT 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 166, 385, 947
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 3 cut(s) 166, 385, 947
PspN4I GGNNCC 4 cut(s) 179, 384, 912, 946
PspPI GGNCC 1 cut(s) 944
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 2 cut(s) 152, 302
PsuI RGATCY 3 cut(s) 177, 910, 931
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 1 cut(s) 869
SaqAI TTAA 2 cut(s) 462, 1050
SatI GCNGC 2 cut(s) 360, 751
Sau3AI GATC 5 cut(s) 177, 824, 910, 931, 1000
Sau96I GGNCC 1 cut(s) 944
SchI GAGTC 4 cut(s) 256, 287, 777, 797
ScrFI CCNGG 3 cut(s) 168, 387, 949
SduI GDGCHC 1 cut(s) 869
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 3 cut(s) 42, 734, 829
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 119, 138
SmoI CTYRAG 2 cut(s) 119, 138
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 4 cut(s) 278, 707, 882, 1059
SsiI CCGC 2 cut(s) 44, 60
SspMI CTAG 4 cut(s) 18, 308, 594, 873
SstI GAGCTC 1 cut(s) 869
StyD4I CCNGG 3 cut(s) 166, 385, 947
TaaI ACNGT 2 cut(s) 154, 815
TaiI ACGT 4 cut(s) 40, 416, 507, 538
TaqI TCGA 5 cut(s) 260, 632, 648, 869, 1023
TasI AATT 4 cut(s) 278, 707, 882, 1059
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 6 cut(s) 350, 397, 590, 743, 794, 1025
Tru1I TTAA 2 cut(s) 462, 1050
Tru9I TTAA 2 cut(s) 462, 1050
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 359, 750
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 288, 389, 417, 492
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 207
VspI ATTAAT 1 cut(s) 462
XagI CCTNNNNNAGG 2 cut(s) 171, 390
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 221, 928
XspI CTAG 4 cut(s) 18, 308, 594, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.