Rh5BG541600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000356
Physical Location & Seq
Reverse (-)
85875381 .. 85875632
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG541600.1

Sequence Viewer

Length: 252 bp
ATGATTCTCTCTCAATCCATATCTGGTAAGATCATCGGCCACCTTCGCCGGAGAAAGTTTCACGGCGACATGGAAAACTATTCTTCTCGAACGACGACTTATTCAACCTTGGAGGCGAAGCAGAAGACCCATGGCTCTACACTGTTCGACATCGTCCGATTTGGACAGGACGATTTGCGGAACGGCGATAGGGATGTATCGACGTCGCTCCCAGCCTCGTCGTCGAAGCTAAGTCATCGTTGCTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.34

Weight (kDa)

9.5

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 206
AciI CCGC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 203
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 243, 246
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 230, 233
BceAI ACGGC 2 cut(s) 79, 199
BisI GCNGC 2 cut(s) 244, 247
BlsI GCNGC 2 cut(s) 245, 248
BpiI GAAGAC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 108, 130
BseDI CCNNGG 2 cut(s) 108, 130
BseGI GGATG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 230, 233
BseYI CCCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 49
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 178
BspANI GGCC 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 108, 130
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 2 cut(s) 108, 130
Bst4CI ACNGT 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 230, 233
BstV2I GAAGAC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 140
CviAII CATG 2 cut(s) 70, 131
CviJI RGCY 4 cut(s) 39, 135, 215, 229
CviKI_1 RGCY 4 cut(s) 39, 135, 215, 229
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 108, 130
EcoT14I CCWWGG 2 cut(s) 108, 130
ErhI CCWWGG 2 cut(s) 108, 130
FaeI CATG 2 cut(s) 73, 134
FaiI YATR 3 cut(s) 20, 71, 132
FatI CATG 2 cut(s) 69, 130
Fnu4HI GCNGC 2 cut(s) 244, 247
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 244, 247
GluI GCNGC 2 cut(s) 244, 247
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 2 cut(s) 73, 134
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 87
Hpy99I CGWCG 5 cut(s) 97, 205, 208, 223, 226
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 2 cut(s) 73, 134
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 9, 62, 152, 225
Lsp1109I GCAGC 2 cut(s) 230, 233
MaeII ACGT 1 cut(s) 203
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 75, 136
MnlI CCTC 2 cut(s) 106, 226
MspI CCGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 45
NcoI CCATGG 1 cut(s) 130
NdeII GATC 1 cut(s) 30
NlaIII CATG 2 cut(s) 73, 134
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 245, 248
PspFI CCCAGC 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 244, 247
Sau3AI GATC 1 cut(s) 30
SetI ASST 4 cut(s) 45, 110, 206, 231
SsiI CCGC 1 cut(s) 178
StyI CCWWGG 2 cut(s) 108, 130
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 88, 147, 200, 224
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 243, 246
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 152
ZraI GACGTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.