Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

3183393 .. 3192813

Gene Structure 9421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGATGTACCCCGGTGATCCTCAGCAGCAGCAGCAGCAACAACACCAACAGCAGCAGCAGCAACACCAACAGCAGCAGCAGCAGCAACACTATCACCAGCAGCAGCAGCAACATCACCAACAGCAGCACCACCAGCACCAGCAAGGTGGAGAGTTTCACAGGGGCCCACCGCAGCAGCAGCCGCCGCCGATGATGCGGCAGCCGTCTGCTTCTTCGACTAATATGGCCCCGGATTATCACCACCCCTCTGCCCCTGGCCCTCCTGTTCCTCCTTACGATGCTCATGGTGATGGTTTTGGTGCAAAGAGGAACAGAAAGCAGACTCAGAGAAGGGCAGTTGACTACACAAGCACTGTGGTGCGGTATATGCAGACTCGGATGTGGCAGCGGGATGCAAGGGATAGGACAGTATTGCAAGCTACACCAGCGGCAGCAATTGATATGTTGCCAACAGTTGCCTATTCAGATAATCCATCTACAGGCTTTGCTGCAAAGTTTGTGCATACTTCCACAAACAAAGTCCGCAATTCAATTAATCGGGTTTTGTGGACTCCTCCAGGGAGGCGTCTTATTACAGGCTCTCAAAATGGGGAATTCACTCTTTGGAATGGTCAATCATTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGATCTATGGTATGGAGTCATAATGGCAACTGGATGGTCTCTGGTGATGATGGGGGCTCAATAAAGTATTGGCAGACCAACATGAATAATGTGAAGGCCAACAAATCTGCTCACAAAGAATCTGTTCAGGACTTAAGTTTTTGTAAGACTGACTTGAAGTTCTGTTCCTGTTCGAATGATACTACTGTTAAAATATGGGATTTTGCACGGTGCCAGGAAGAGCGCACTTTGACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCTCTACTAGCTTCAGGTGGGAAAGACAGTCTAGTCAAACTTTGGGATGCTAAGTCAGGGCGAGAACTCTGTTCATTTCATGGTCACAAAAATTTGGTGCAATCTGTTAAATGGAACCAAAATGGTAACTGGCTGCTAACTGCTTCAAAGGACCAAATCATAAAGCTTTACGACATAAGGGCTATGAAGGAACTTGAATCTTTCCGCGGGCATCGGAAGGAAGTGACTGCTCTGGCTTGGCATCCATTTCATGAAGAATATTTTGTCAGTGGGAGTGCTGATGGATCCATTTTTCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAATTCCTAATGCACACGATAACAGTGTGTGGGATCTCCAATGGCATCCTATTGGTTATATTCTTTGCAGCGGTAGCAATGATCATACAACAAAGTTTTGGTGCCGAAATAGGCCAGGAGACACTGGTCGTGATAAATTTAACATCAATCAGACTCAAGGTTATGGTGATCAAAACTCTGCTTTTGCTGGCCGCATGGGTGGTAATTTTCCACTACATGATGGACCACCAACTCCAGGACCATTTACTCCCGGGGGAACTCGAAATGAAGGAACTATTCCAGGGGTTGGAGTAGCTATGCCGTTAGCCATACCATCCCTCGACTCATCTATTCAGGGAGAGCAACAGCAACCTCATGCACATTCAATGCCTTTAGGTGCTCCTCCTCTCCCACCTGGTCCACATCCCTCTCTTCTTGCTGCAAATCAGCAGCAACCATATCATCAAAATGCCCAACAGCAACATCAGCAACACCAAGGTCACCCCCAACAAATGCCCCCTTTGCCCATGCCACCTCCAAATATGTCACAGCTACAGCCTCCATCCCATTTGCCCTTGCTGCCGCATCCTCATTTACGTCCACCACCCCAAATGCCCCCACTTGGTATGCCATCTTCAGTGTCCGGATCTTTGCCTATGCCTTCATCGGTTCCTACATCACTCTCAATGCCCATGGGCATGCAAGGTACAATGAATCAGATGGTTCACCAATTGCCACAAGGTCATTATATGGGCATGAATCCACCTCCACCTGTTGGAGGTTTTCCAAATGCCATGCCAAACATGCAGGGCCCATCTAGTGCAAGTGGAGGGCAAATGTATTCTCATGGTGGCACCTTCAATCGTGCACAATCTGGACAAATACCAATGCTACCGGGGTATAATCCCTACCAGCCCAGGGGTCAAGCAGGCATGCCTCAGCCTCCACCAGGGCCACCACCTCATGGGCAAACACCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

743

Amino Acids

82.59

Weight (kDa)

8.89

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	126 - 413	2.8e-13	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	160 - 338	3.1e-25	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	168 - 246	5.1e-07	WDR3 second beta-propeller domain
WDR55	PF24796	169 - 288	4.8e-10	WDR55
Beta-prop_EML_2	PF23414	171 - 257	4.2e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	171 - 300	3.4e-19	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	173 - 347	6.2e-29	THOC3 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	177 - 263	2.3e-10	IFT140 first beta-propeller
WD40_Gbeta	PF25391	178 - 381	9.5e-22	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	187 - 380	3e-31	Prp19 WD40 domain
Beta-prop_EML	PF23409	187 - 253	9.1e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	211 - 244	1.6e-06	WD domain, G-beta repeat
EIF3I	PF24805	213 - 294	9.8e-09	EIF3I
Beta-prop_TEP1_2nd	PF25047	221 - 391	5.1e-14	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	227 - 414	4.6e-20	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	228 - 352	2.8e-24	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	240 - 329	2.4e-09	WDR3 second beta-propeller domain
WDR55	PF24796	249 - 413	8.8e-16	WDR55
WD40_WDHD1_1st	PF24817	261 - 339	2.5e-09	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	269 - 437	1.6e-20	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	273 - 361	9.8e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st	PF25173	286 - 413	4e-28	WDR3 first beta-propeller domain
WD40	PF00400	293 - 329	4.3e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	295 - 377	1.7e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	296 - 367	3.7e-06	IFT140 first beta-propeller
EIF3I	PF24805	296 - 455	4.1e-13	EIF3I
Beta-prop_EML	PF23409	297 - 403	5.9e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd	PF25172	297 - 416	2.9e-13	WDR3 second beta-propeller domain
Beta-prop_Aladin	PF25460	303 - 412	3.3e-06	Aladin seven-bladed propeller
WDR55	PF24796	304 - 453	1.7e-12	WDR55
Beta-prop_WDR19_1st	PF23389	307 - 453	2.1e-07	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	321 - 457	1.7e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	334 - 458	6.8e-22	CDC20/Fizzy WD40 domain
WD40	PF00400	334 - 371	5.5e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	340 - 457	2.2e-20	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	342 - 459	3.3e-22	THOC3 beta-propeller domain
ANAPC4_WD40	PF12894	342 - 394	6.2e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40_WDHD1_1st	PF24817	346 - 423	2.7e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	376 - 456	5.8e-10	Prp19 WD40 domain
WD40	PF00400	376 - 413	9.2e-06	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	377 - 456	5.8e-10	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	971
AccB1I	GGYRCC	4 cut(s)	870, 927, 1368, 2099
AccB7I	CCANNNNNTGG	3 cut(s)	1553, 2021, 2210
AccII	CGCG	1 cut(s)	1146
AccIII	TCCGGA	1 cut(s)	1889
AclWI	GGATC	5 cut(s)	11, 1218, 1231, 1308, 1900
AcoI	YGGCCR	2 cut(s)	895, 1456
AcsI	RAATTY	4 cut(s)	593, 1030, 1269, 1403
AcuI	CTGAAG	3 cut(s)	623, 936, 1866
AcyI	GRCGYC	1 cut(s)	565
AfaI	GTAC	2 cut(s)	8, 1954
AflII	CTTAAG	1 cut(s)	793
AgsI	TTSAA	8 cut(s)	531, 629, 817, 1086, 1136, 1268, 1632, 2107
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	419, 950, 1105, 1562, 1798
AluI	AGCT	5 cut(s)	419, 950, 1105, 1562, 1798
Alw21I	GWGCWC	2 cut(s)	1648, 2116
Alw26I	GTCTC	3 cut(s)	703, 945, 1380
Alw44I	GTGCAC	1 cut(s)	2112
AlwI	GGATC	5 cut(s)	11, 1218, 1231, 1308, 1900
Ama87I	CYCGRG	1 cut(s)	1517
Aor13HI	TCCGGA	1 cut(s)	1889
AoxI	GGCC	9 cut(s)	163, 225, 256, 756, 895, 1379, 1456, 2056, 2198
ApaI	GGGCCC	2 cut(s)	167, 2060
ApaLI	GTGCAC	1 cut(s)	2112
ApoI	RAATTY	4 cut(s)	593, 1030, 1269, 1403
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	2 cut(s)	633, 783
AspLEI	GCGC	1 cut(s)	885
AsuC2I	CCSGG	5 cut(s)	12, 230, 1518, 1519, 2142
AsuHPI	GGTGA	9 cut(s)	26, 86, 107, 230, 299, 716, 1445, 1739, 1964
AsuII	TTCGAA	1 cut(s)	833
AvaI	CYCGRG	1 cut(s)	1517
AvaII	GGWCC	4 cut(s)	1090, 1490, 1505, 1664
BaeGI	GKGCMC	3 cut(s)	167, 2060, 2116
BaeI	ACNNNNGTAYC	2 cut(s)	831, 864
BalI	TGGCCA	1 cut(s)	897
BamHI	GGATCC	1 cut(s)	1223
BanI	GGYRCC	4 cut(s)	870, 927, 1368, 2099
BanII	GRGCYC	3 cut(s)	167, 719, 2060
BarI	GAAGNNNNNNTAC	2 cut(s)	1864, 1896
Bbv12I	GWGCWC	2 cut(s)	1648, 2116
BbvCI	CCTCAGC	2 cut(s)	21, 2184
BceAI	ACGGC	2 cut(s)	187, 1552
BclI	TGATCA	3 cut(s)	649, 1348, 1435
BcnI	CCSGG	5 cut(s)	12, 230, 1518, 1519, 2142
BcoDI	GTCTC	3 cut(s)	703, 945, 1380
BfaI	CTAG	3 cut(s)	947, 971, 2064
BfmI	CTRYAG	2 cut(s)	477, 1799
BfrI	CTTAAG	1 cut(s)	793
BglII	AGATCT	1 cut(s)	662
Bme18I	GGWCC	4 cut(s)	1090, 1490, 1505, 1664
BmeT110I	CYCGRG	1 cut(s)	1517
BmsI	GCATC	8 cut(s)	183, 268, 382, 976, 1159, 1189, 1321, 1840
BoxI	GACNNNNGTC	1 cut(s)	1392
BpmI	CTGGAG	2 cut(s)	540, 1485
Bpu10I	CCTNAGC	2 cut(s)	21, 2184
Bpu14I	TTCGAA	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	1407
BpuMI	CCSGG	5 cut(s)	12, 230, 1518, 1519, 2142
BsaHI	GRCGYC	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	703
BsaWI	WCCGGW	1 cut(s)	1889
Bse1I	ACTGG	5 cut(s)	695, 898, 929, 1073, 1396
Bse3DI	GCAATG	1 cut(s)	1351
BseAI	TCCGGA	1 cut(s)	1889
BseMI	GCAATG	1 cut(s)	1351
BseMII	CTCAG	3 cut(s)	35, 338, 2198
BseNI	ACTGG	5 cut(s)	695, 898, 929, 1073, 1396
BseRI	GAGGAG	3 cut(s)	543, 1638, 1641
BseSI	GKGCMC	3 cut(s)	167, 2060, 2116
Bsh1236I	CGCG	1 cut(s)	1146
BshFI	GGCC	9 cut(s)	165, 227, 258, 758, 897, 1381, 1458, 2058, 2200
BshNI	GGYRCC	4 cut(s)	870, 927, 1368, 2099
BsiHKAI	GWGCWC	2 cut(s)	1648, 2116
BsiHKCI	CYCGRG	1 cut(s)	1517
BsiSI	CCGG	5 cut(s)	12, 230, 1518, 1890, 2141
BsmAI	GTCTC	3 cut(s)	703, 945, 1380
BsnI	GGCC	9 cut(s)	165, 227, 258, 758, 897, 1381, 1458, 2058, 2200
Bso31I	GGTCTC	1 cut(s)	703
BsoBI	CYCGRG	1 cut(s)	1517
Bsp119I	TTCGAA	1 cut(s)	833
Bsp120I	GGGCCC	2 cut(s)	163, 2056
Bsp1286I	GDGCHC	5 cut(s)	167, 719, 1648, 2060, 2116
Bsp13I	TCCGGA	1 cut(s)	1889
Bsp143I	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
Bsp19I	CCATGG	2 cut(s)	898, 1938
BspANI	GGCC	9 cut(s)	165, 227, 258, 758, 897, 1381, 1458, 2058, 2200
BspCNI	CTCAG	3 cut(s)	34, 337, 2197
BspEI	TCCGGA	1 cut(s)	1889
BspFNI	CGCG	1 cut(s)	1146
BspHI	TCATGA	2 cut(s)	646, 1189
BspPI	GGATC	5 cut(s)	11, 1218, 1231, 1308, 1900
BspQI	GCTCTTC	1 cut(s)	873
BspT104I	TTCGAA	1 cut(s)	833
BspT107I	GGYRCC	4 cut(s)	870, 927, 1368, 2099
BspTI	CTTAAG	1 cut(s)	793
BspTNI	GGTCTC	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	1351
BsrI	ACTGG	5 cut(s)	695, 898, 929, 1073, 1396
BssMI	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	3 cut(s)	898, 1741, 1938
Bst4CI	ACNGT	7 cut(s)	355, 409, 454, 847, 870, 968, 1292
Bst6I	CTCTTC	3 cut(s)	873, 908, 1683
BstACI	GRCGYC	1 cut(s)	565
BstAFI	CTTAAG	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	6 cut(s)	417, 1148, 1456, 1946, 2176, 2180
BstDEI	CTNAG	5 cut(s)	21, 324, 990, 2184, 2223
BstDSI	CCRYGG	3 cut(s)	898, 1144, 1938
BstEII	GGTNACC	1 cut(s)	1745
BstENI	CCTNNNNNAGG	2 cut(s)	2022, 2193
BstFNI	CGCG	1 cut(s)	1146
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	8 cut(s)	19, 652, 665, 1226, 1303, 1351, 1438, 1895
BstMAI	GTCTC	3 cut(s)	703, 945, 1380
BstMBI	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
BstNSI	RCATGY	3 cut(s)	1948, 2053, 2182
BstPAI	GACNNNNGTC	1 cut(s)	1392
BstPI	GGTNACC	1 cut(s)	1745
BstSFI	CTRYAG	2 cut(s)	477, 1799
BstSLI	GKGCMC	3 cut(s)	167, 2060, 2116
BstUI	CGCG	1 cut(s)	1146
BstX2I	RGATCY	4 cut(s)	662, 1223, 1300, 1892
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	4 cut(s)	662, 1223, 1300, 1892
BsuRI	GGCC	9 cut(s)	165, 227, 258, 758, 897, 1381, 1458, 2058, 2200
BtgI	CCRYGG	3 cut(s)	898, 1144, 1938
BtsIMutI	CAGTG	5 cut(s)	351, 1213, 1297, 1389, 1890
Cac8I	GCNNGC	6 cut(s)	417, 1148, 1456, 1946, 2176, 2180
CciI	TCATGA	2 cut(s)	646, 1189
CfoI	GCGC	1 cut(s)	885
Cfr42I	CCGCGG	1 cut(s)	1147
Cfr9I	CCCGGG	1 cut(s)	1517
CseI	GACGC	1 cut(s)	554
CsiI	ACCWGGT	1 cut(s)	1660
Csp6I	GTAC	2 cut(s)	7, 1953
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviQI	GTAC	2 cut(s)	7, 1953
DdeI	CTNAG	5 cut(s)	21, 324, 990, 2184, 2223
DpnI	GATC	8 cut(s)	18, 651, 664, 1225, 1302, 1350, 1437, 1894
DpnII	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
DrdI	GACNNNNNNGTC	1 cut(s)	971
DseDI	GACNNNNNNGTC	1 cut(s)	971
EaeI	YGGCCR	2 cut(s)	895, 1456
Eam1104I	CTCTTC	3 cut(s)	873, 908, 1683
EarI	CTCTTC	3 cut(s)	873, 908, 1683
Eco130I	CCWWGG	3 cut(s)	898, 1741, 1938
Eco24I	GRGCYC	3 cut(s)	167, 719, 2060
Eco31I	GGTCTC	1 cut(s)	703
Eco47I	GGWCC	4 cut(s)	1090, 1490, 1505, 1664
Eco57I	CTGAAG	3 cut(s)	623, 936, 1866
Eco88I	CYCGRG	1 cut(s)	1517
Eco91I	GGTNACC	1 cut(s)	1745
EcoNI	CCTNNNNNAGG	2 cut(s)	2022, 2193
EcoO109I	RGGNCCY	2 cut(s)	163, 2056
EcoO65I	GGTNACC	1 cut(s)	1745
EcoRI	GAATTC	1 cut(s)	593
EcoT14I	CCWWGG	3 cut(s)	898, 1741, 1938
EcoT38I	GRGCYC	3 cut(s)	167, 719, 2060
ErhI	CCWWGG	3 cut(s)	898, 1741, 1938
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FauI	CCCGC	2 cut(s)	381, 1139
FbaI	TGATCA	3 cut(s)	649, 1348, 1435
FriOI	GRGCYC	3 cut(s)	167, 719, 2060
FspBI	CTAG	3 cut(s)	947, 971, 2064
GlaI	GCGC	1 cut(s)	884
GsuI	CTGGAG	2 cut(s)	540, 1485
HaeIII	GGCC	9 cut(s)	165, 227, 258, 758, 897, 1381, 1458, 2058, 2200
HapII	CCGG	5 cut(s)	12, 230, 1518, 1890, 2141
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	1 cut(s)	885
Hin1I	GRCGYC	1 cut(s)	565
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	2 cut(s)	340, 922
HindII	GTYRAC	2 cut(s)	340, 922
HindIII	AAGCTT	1 cut(s)	1103
HpaII	CCGG	5 cut(s)	12, 230, 1518, 1890, 2141
HphI	GGTGA	9 cut(s)	26, 86, 107, 230, 299, 716, 1445, 1739, 1964
Hpy166II	GTNNAC	7 cut(s)	340, 549, 922, 1667, 1847, 1972, 2114
Hpy188I	TCNGA	7 cut(s)	327, 378, 466, 662, 1155, 1419, 1965
Hpy188III	TCNNGA	6 cut(s)	647, 788, 1190, 1397, 1890, 2121
Hpy8I	GTNNAC	7 cut(s)	340, 549, 922, 1667, 1847, 1972, 2114
HpyAV	CCTTC	7 cut(s)	324, 748, 1120, 1150, 1529, 1917, 2113
HpyCH4III	ACNGT	7 cut(s)	355, 409, 454, 847, 870, 968, 1292
HpyCH4IV	ACGT	1 cut(s)	1843
HpyF3I	CTNAG	5 cut(s)	21, 324, 990, 2184, 2223
HpySE526I	ACGT	1 cut(s)	1843
Hsp92I	GRCGYC	1 cut(s)	565
HspAI	GCGC	1 cut(s)	883
Kpn2I	TCCGGA	1 cut(s)	1889
Ksp22I	TGATCA	3 cut(s)	649, 1348, 1435
KspI	CCGCGG	1 cut(s)	1147
Kzo9I	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	1 cut(s)	1651
LweI	GCATC	8 cut(s)	183, 268, 382, 976, 1159, 1189, 1321, 1840
MabI	ACCWGGT	1 cut(s)	1660
MaeI	CTAG	3 cut(s)	947, 971, 2064
MaeII	ACGT	1 cut(s)	1843
MaeIII	GTNAC	5 cut(s)	1022, 1064, 1162, 1745, 1791
MalI	GATC	8 cut(s)	18, 651, 664, 1225, 1302, 1350, 1437, 1894
MboI	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
MboII	GAAGA	7 cut(s)	204, 629, 890, 925, 1205, 1670, 1872
MfeI	CAATTG	2 cut(s)	435, 1976
MflI	RGATCY	4 cut(s)	662, 1223, 1300, 1892
MhlI	GDGCHC	5 cut(s)	167, 719, 1648, 2060, 2116
MlsI	TGGCCA	1 cut(s)	897
MluNI	TGGCCA	1 cut(s)	897
MlyI	GAGTC	6 cut(s)	316, 367, 544, 685, 1414, 1583
MmeI	TCCRAC	2 cut(s)	1534, 2002
Mox20I	TGGCCA	1 cut(s)	897
MroI	TCCGGA	1 cut(s)	1889
MroXI	GAANNNNTTC	2 cut(s)	633, 783
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	6 cut(s)	534, 621, 794, 849, 1047, 1407
MslI	CAYNNNNRTG	4 cut(s)	288, 356, 1713, 1943
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	4 cut(s)	388, 428, 1146, 1338
MspCI	CTTAAG	1 cut(s)	793
MspI	CCGG	5 cut(s)	12, 230, 1518, 1890, 2141
MunI	CAATTG	2 cut(s)	435, 1976
MvnI	CGCG	1 cut(s)	1146
NciI	CCSGG	5 cut(s)	12, 230, 1518, 1519, 2142
NcoI	CCATGG	2 cut(s)	898, 1938
NdeII	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
NmuCI	GTSAC	4 cut(s)	1022, 1162, 1745, 1791
NspI	RCATGY	3 cut(s)	1948, 2053, 2182
NspV	TTCGAA	1 cut(s)	833
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	2 cut(s)	1948, 2182
PagI	TCATGA	2 cut(s)	646, 1189
PasI	CCCWGGG	1 cut(s)	2163
PciSI	GCTCTTC	1 cut(s)	873
PdmI	GAANNNNTTC	2 cut(s)	633, 783
PfeI	GAWTC	5 cut(s)	634, 779, 1136, 1960, 2005
PflMI	CCANNNNNTGG	3 cut(s)	1553, 2021, 2210
PfoI	TCCNGGA	1 cut(s)	1501
PleI	GAGTC	6 cut(s)	316, 367, 544, 684, 1414, 1583
PpsI	GAGTC	6 cut(s)	316, 367, 544, 684, 1414, 1583
PshAI	GACNNNNGTC	1 cut(s)	1392
PshBI	ATTAAT	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	1745
PspOMI	GGGCCC	2 cut(s)	163, 2056
PsuI	RGATCY	4 cut(s)	662, 1223, 1300, 1892
RsaI	GTAC	2 cut(s)	8, 1954
RsaNI	GTAC	2 cut(s)	7, 1953
RseI	CAYNNNNRTG	4 cut(s)	288, 356, 1713, 1943
SacII	CCGCGG	1 cut(s)	1147
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	6 cut(s)	534, 621, 794, 849, 1047, 1407
Sau3AI	GATC	8 cut(s)	16, 649, 662, 1223, 1300, 1348, 1435, 1892
SchI	GAGTC	6 cut(s)	316, 367, 544, 685, 1414, 1583
SduI	GDGCHC	5 cut(s)	167, 719, 1648, 2060, 2116
SexAI	ACCWGGT	1 cut(s)	1660
SfaNI	GCATC	8 cut(s)	183, 268, 382, 976, 1159, 1189, 1321, 1840
SfcI	CTRYAG	2 cut(s)	477, 1799
Sfr303I	CCGCGG	1 cut(s)	1147
SfuI	TTCGAA	1 cut(s)	833
SgrBI	CCGCGG	1 cut(s)	1147
SinI	GGWCC	4 cut(s)	1090, 1490, 1505, 1664
SmaI	CCCGGG	1 cut(s)	1519
SmiMI	CAYNNNNRTG	4 cut(s)	288, 356, 1713, 1943
SmlI	CTYRAG	2 cut(s)	793, 1422
SmoI	CTYRAG	2 cut(s)	793, 1422
SphI	GCATGC	2 cut(s)	1948, 2182
SspI	AATATT	1 cut(s)	1199
SspMI	CTAG	3 cut(s)	947, 971, 2064
StyI	CCWWGG	3 cut(s)	898, 1741, 1938
TaaI	ACNGT	7 cut(s)	355, 409, 454, 847, 870, 968, 1292
TaiI	ACGT	1 cut(s)	1846
TaqI	TCGA	4 cut(s)	215, 833, 1528, 1587
TauI	GCSGC	6 cut(s)	184, 187, 199, 431, 1461, 1831
TfiI	GAWTC	5 cut(s)	634, 779, 1136, 1960, 2005
Tru1I	TTAA	6 cut(s)	534, 621, 794, 849, 1047, 1407
Tru9I	TTAA	6 cut(s)	534, 621, 794, 849, 1047, 1407
TscAI	CASTG	5 cut(s)	358, 1213, 1297, 1396, 1890
TseFI	GTSAC	4 cut(s)	1022, 1162, 1745, 1791
Tsp45I	GTSAC	4 cut(s)	1022, 1162, 1745, 1791
TspMI	CCCGGG	1 cut(s)	1517
TspRI	CASTG	5 cut(s)	358, 1213, 1297, 1396, 1890
Van91I	CCANNNNNTGG	3 cut(s)	1553, 2021, 2210
Vha464I	CTTAAG	1 cut(s)	793
VneI	GTGCAC	1 cut(s)	2112
VpaK11BI	GGWCC	4 cut(s)	1090, 1490, 1505, 1664
VspI	ATTAAT	1 cut(s)	534
XagI	CCTNNNNNAGG	2 cut(s)	2022, 2193
XapI	RAATTY	4 cut(s)	593, 1030, 1269, 1403
XceI	RCATGY	3 cut(s)	1948, 2053, 2182
XmaI	CCCGGG	1 cut(s)	1517
XmnI	GAANNNNTTC	2 cut(s)	633, 783
XspI	CTAG	3 cut(s)	947, 971, 2064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.