Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

10991515 .. 10993312

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG062400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACGGGTAATTTTCCATTACACGATGGACCACCAACTCCAGGACCATTTACTCCCGGGGGAACTCGAAATGAAGGAACCATTCCAGGGGTTGGAGTAGCTATGCCGTTAGCCATACCATCCCTTGACGCATCTATTCAGGGAGAACAACAGCAACCTCATGCACATTCAATGCCTTTAGGAGCTCCTCCTCTCCCACCCGGTCCACATCCTTCTCTTCTTGCTGCAAATCAGCAGCAACCATATCATCAAAATGCGCAACAGCAACATCAGCAACACCAAGGTCACCCACAACAAATGCCCCCTTTGCCTATGCCACCTCCAAATATGCCACAGCTACAGCCTCCATCCCATTTACCCTTGCTGCCGCATCCTCATTTACGTCCACCACCCCAAATGCCCCCACTCGGTATGCCATCTTCAGTGTCCGGATCTTTGCCTATGCCTTCATCAGTTCCAACATCACTTTCAATGCCAATGGGCATGCAAGGTACAATGAATCAGATGGTTCATCAATTGCCACAAGGTCATTATATGGGCATGAACCCACCTCCACCTGCTGGAGGTTTCCCAAATGGGATGCCGAACATGCAGGGCCCATCTAATGCAAGTGGAGGGCAAATGTATTCTCATGCTGGCACCTTCAATCGTGCACAATCCGGACAAATGCCAATGCTACCGGGGTATAATCCCTACCAGCCCAGGGGTCAATCCGGTATGCCTCAGCCTCCACCAGGGCCACCACCACATGGGCAAACACCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

255

Amino Acids

26.84

Weight (kDa)

7.31

Isoelectric Point (pI)

78.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc16I	TGCGCA	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	3 cut(s)	92, 560, 749
AccIII	TCCGGA	2 cut(s)	428, 659
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	9 cut(s)	41, 87, 92, 407, 560, 563, 703, 734, 749
AgsI	TTSAA	3 cut(s)	171, 471, 646
AjnI	CCWGG	4 cut(s)	40, 85, 701, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	101, 185, 337
AluI	AGCT	3 cut(s)	101, 185, 337
Alw21I	GWGCWC	2 cut(s)	187, 655
Alw44I	GTGCAC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	56
Aor13HI	TCCGGA	2 cut(s)	428, 659
AoxI	GGCC	2 cut(s)	595, 737
ApaI	GGGCCC	1 cut(s)	599
ApaLI	GTGCAC	1 cut(s)	651
ApeKI	GCWGC	3 cut(s)	224, 235, 364
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	6 cut(s)	29, 44, 203, 595, 596, 737
AsuC2I	CCSGG	4 cut(s)	57, 58, 201, 681
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	29, 44, 203
BaeGI	GKGCMC	2 cut(s)	599, 655
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	2 cut(s)	187, 599
BarI	GAAGNNNNNNTAC	2 cut(s)	403, 435
Bbv12I	GWGCWC	2 cut(s)	187, 655
BbvCI	CCTCAGC	1 cut(s)	723
BbvI	GCAGC	3 cut(s)	211, 247, 351
BccI	CCATC	6 cut(s)	20, 127, 355, 424, 499, 607
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	4 cut(s)	42, 87, 703, 735
BcnI	CCSGG	4 cut(s)	57, 58, 201, 681
BfmI	CTRYAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	225, 236, 365, 368
BlsI	GCNGC	4 cut(s)	226, 237, 366, 369
Bme1390I	CCNGG	8 cut(s)	42, 57, 58, 87, 201, 681, 703, 735
Bme18I	GGWCC	3 cut(s)	29, 44, 203
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	6 cut(s)	29, 44, 203, 595, 596, 737
BmiI	GGNNCC	3 cut(s)	79, 597, 640
BmrFI	CCNGG	8 cut(s)	42, 57, 58, 87, 201, 681, 703, 735
BmsI	GCATC	3 cut(s)	140, 379, 570
BpmI	CTGGAG	2 cut(s)	24, 582
Bpu10I	CCTNAGC	1 cut(s)	723
BpuMI	CCSGG	4 cut(s)	57, 58, 201, 681
BsaJI	CCNNGG	8 cut(s)	56, 57, 86, 280, 680, 701, 702, 734
BsaWI	WCCGGW	3 cut(s)	428, 659, 713
Bsc4I	CCNNNNNNNGG	9 cut(s)	41, 87, 92, 407, 560, 563, 703, 734, 749
BseAI	TCCGGA	2 cut(s)	428, 659
BseBI	CCWGG	4 cut(s)	42, 87, 703, 735
BseDI	CCNNGG	8 cut(s)	56, 57, 86, 280, 680, 701, 702, 734
BseGI	GGATG	5 cut(s)	119, 208, 347, 370, 585
BseLI	CCNNNNNNNGG	9 cut(s)	41, 87, 92, 407, 560, 563, 703, 734, 749
BseMII	CTCAG	1 cut(s)	737
BseRI	GAGGAG	2 cut(s)	177, 180
BseSI	GKGCMC	2 cut(s)	599, 655
BseXI	GCAGC	3 cut(s)	211, 247, 351
BshFI	GGCC	2 cut(s)	597, 739
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	187, 655
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	6 cut(s)	57, 201, 429, 660, 680, 714
BslI	CCNNNNNNNGG	9 cut(s)	41, 87, 92, 407, 560, 563, 703, 734, 749
BsnI	GGCC	2 cut(s)	597, 739
BsoBI	CYCGRG	1 cut(s)	56
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	3 cut(s)	187, 599, 655
Bsp13I	TCCGGA	2 cut(s)	428, 659
Bsp143I	GATC	1 cut(s)	431
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	597, 739
BspCNI	CTCAG	1 cut(s)	736
BspEI	TCCGGA	2 cut(s)	428, 659
BspLI	GGNNCC	3 cut(s)	79, 597, 640
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	638
BssECI	CCNNGG	8 cut(s)	56, 57, 86, 280, 680, 701, 702, 734
BssMI	GATC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	4 cut(s)	42, 87, 703, 735
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	485, 637
BstDEI	CTNAG	1 cut(s)	723
BstEII	GGTNACC	1 cut(s)	284
BstENI	CCTNNNNNAGG	2 cut(s)	561, 732
BstF5I	GGATG	5 cut(s)	119, 208, 347, 370, 585
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 307, 589
BstNI	CCWGG	4 cut(s)	42, 87, 703, 735
BstNSI	RCATGY	2 cut(s)	487, 592
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	8 cut(s)	40, 55, 56, 85, 199, 679, 701, 733
BstSFI	CTRYAG	1 cut(s)	338
BstSLI	GKGCMC	2 cut(s)	599, 655
BstV1I	GCAGC	3 cut(s)	211, 247, 351
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	597, 739
BtsCI	GGATG	5 cut(s)	119, 208, 347, 370, 585
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	485, 637
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	6 cut(s)	29, 44, 203, 595, 596, 737
Cfr9I	CCCGGG	1 cut(s)	56
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	6 cut(s)	161, 484, 541, 589, 632, 749
CviJI	RGCY	9 cut(s)	101, 113, 185, 337, 343, 597, 700, 727, 739
CviKI_1	RGCY	9 cut(s)	101, 113, 185, 337, 343, 597, 700, 727, 739
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	1 cut(s)	433
DpnII	GATC	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	2 cut(s)	187, 599
Eco47I	GGWCC	3 cut(s)	29, 44, 203
Eco53kI	GAGCTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	2 cut(s)	561, 732
EcoO109I	RGGNCCY	1 cut(s)	595
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	4 cut(s)	40, 85, 701, 733
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	187, 599
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	6 cut(s)	164, 487, 544, 592, 635, 752
FatI	CATG	6 cut(s)	160, 483, 540, 588, 631, 748
Fnu4HI	GCNGC	4 cut(s)	225, 236, 365, 368
FokI	GGATG	5 cut(s)	106, 195, 334, 357, 592
FriOI	GRGCYC	2 cut(s)	187, 599
Fsp4HI	GCNGC	4 cut(s)	225, 236, 365, 368
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	4 cut(s)	225, 236, 365, 368
GsuI	CTGGAG	2 cut(s)	24, 582
HaeIII	GGCC	2 cut(s)	597, 739
HapII	CCGG	6 cut(s)	57, 201, 429, 660, 680, 714
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	6 cut(s)	164, 487, 544, 592, 635, 752
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	6 cut(s)	57, 201, 429, 660, 680, 714
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	206, 386, 653
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	2 cut(s)	429, 660
Hpy8I	GTNNAC	3 cut(s)	206, 386, 653
HpyAV	CCTTC	4 cut(s)	68, 222, 456, 652
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	6 cut(s)	164, 227, 487, 592, 608, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 307, 589
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	6 cut(s)	164, 487, 544, 592, 635, 752
HspAI	GCGC	1 cut(s)	257
Kpn2I	TCCGGA	2 cut(s)	428, 659
Kzo9I	GATC	1 cut(s)	431
LmnI	GCTCC	2 cut(s)	182, 190
Lsp1109I	GCAGC	3 cut(s)	211, 247, 351
LweI	GCATC	3 cut(s)	140, 379, 570
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	433
MboI	GATC	1 cut(s)	431
MboII	GAAGA	2 cut(s)	209, 411
MfeI	CAATTG	1 cut(s)	515
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	3 cut(s)	187, 599, 655
MluCI	AATT	2 cut(s)	10, 515
MmeI	TCCRAC	2 cut(s)	73, 482
MroI	TCCGGA	2 cut(s)	428, 659
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	6 cut(s)	57, 201, 429, 660, 680, 714
MspR9I	CCNGG	8 cut(s)	42, 57, 58, 87, 201, 681, 703, 735
MunI	CAATTG	1 cut(s)	515
MvaI	CCWGG	4 cut(s)	42, 87, 703, 735
MwoI	GCNNNNNNNGC	3 cut(s)	271, 307, 589
NciI	CCSGG	4 cut(s)	57, 58, 201, 681
NdeII	GATC	1 cut(s)	431
NlaIII	CATG	6 cut(s)	164, 487, 544, 592, 635, 752
NlaIV	GGNNCC	3 cut(s)	79, 597, 640
NmuCI	GTSAC	1 cut(s)	284
NsbI	TGCGCA	1 cut(s)	258
NspI	RCATGY	2 cut(s)	487, 592
PaeI	GCATGC	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	565
PasI	CCCWGGG	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	499
PflMI	CCANNNNNTGG	3 cut(s)	92, 560, 749
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	226, 237, 366, 369
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	4 cut(s)	40, 85, 701, 733
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	4 cut(s)	40, 85, 701, 733
PspN4I	GGNNCC	3 cut(s)	79, 597, 640
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	6 cut(s)	29, 44, 203, 595, 596, 737
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	187
SatI	GCNGC	4 cut(s)	225, 236, 365, 368
Sau3AI	GATC	1 cut(s)	431
Sau96I	GGNCC	6 cut(s)	29, 44, 203, 595, 596, 737
ScrFI	CCNGG	8 cut(s)	42, 57, 58, 87, 201, 681, 703, 735
SduI	GDGCHC	3 cut(s)	187, 599, 655
SfaNI	GCATC	3 cut(s)	140, 379, 570
SfcI	CTRYAG	1 cut(s)	338
SinI	GGWCC	3 cut(s)	29, 44, 203
SmaI	CCCGGG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	2 cut(s)	10, 515
SsiI	CCGC	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	8 cut(s)	40, 55, 56, 85, 199, 679, 701, 733
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	10, 515
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	499
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	224, 235, 364
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	87, 438, 500, 512, 557
TspMI	CCCGGG	1 cut(s)	56
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	3 cut(s)	92, 560, 749
VneI	GTGCAC	1 cut(s)	651
VpaK11BI	GGWCC	3 cut(s)	29, 44, 203
XagI	CCTNNNNNAGG	2 cut(s)	561, 732
XceI	RCATGY	2 cut(s)	487, 592
XmaI	CCCGGG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.