Rh5BG541700

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000356
Physical Location & Seq
Reverse (-)
85890155 .. 85890895
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG541700.1

Sequence Viewer

Length: 286 bp
ATGGAGGGGAAAACGATTATTGCGGTAATTGCTGCGGGGGTCAGTTACATGGCGATTAATAAGTGGATATGGACTCCAATGAAGCGGGGTCCAAATCCAATACGGAAGGATGATAATGATCCAGCATCTCTTCCTTCATCAGCAGCTGAAGCTTCATCATCATCACCTCCTCCTCCTGAGCAGAAGGATGATCCAGCATCTCTTCCTTCATCATCAGCTGAAGCATCATCATCATCACCACCTCCTCCTCCTCCTGGGCTGGAGTATGATGTGTTTTTGAGTTTCA

Protein Analysis

95

Amino Acids

9.94

Weight (kDa)

4.5

Isoelectric Point (pI)

79.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 35, 85
AclWI GGATC 2 cut(s) 113, 185
AcuI CTGAAG 2 cut(s) 168, 240
AfiI CCNNNNNNNGG 1 cut(s) 254
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 3 cut(s) 146, 152, 218
AluI AGCT 3 cut(s) 146, 152, 218
AlwI GGATC 2 cut(s) 113, 185
AlwNI CAGNNNCTG 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 32, 143
AseI ATTAAT 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 156, 228
AvaII GGWCC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 19, 155
BciT130I CCWGG 1 cut(s) 255
BisI GCNGC 2 cut(s) 33, 144
BlsI GCNGC 2 cut(s) 34, 145
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 3 cut(s) 134, 206, 233
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 115, 193
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 5 cut(s) 159, 162, 234, 237, 240
BseXI GCAGC 2 cut(s) 19, 155
BslI CCNNNNNNNGG 1 cut(s) 254
Bsp143I GATC 2 cut(s) 118, 190
BspACI CCGC 3 cut(s) 23, 35, 85
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 2 cut(s) 113, 185
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 118, 190
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 135, 207
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 115, 193
BstKTI GATC 2 cut(s) 121, 193
BstMBI GATC 2 cut(s) 118, 190
BstMWI GCNNNNNNNGC 2 cut(s) 29, 149
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 19, 155
BtsCI GGATG 2 cut(s) 115, 193
CaiI CAGNNNCTG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 1 cut(s) 49
CviJI RGCY 4 cut(s) 146, 152, 218, 259
CviKI_1 RGCY 4 cut(s) 146, 152, 218, 259
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 120, 192
DpnII GATC 2 cut(s) 118, 190
Eam1104I CTCTTC 2 cut(s) 135, 207
EarI CTCTTC 2 cut(s) 135, 207
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 168, 240
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 52
FaiI YATR 3 cut(s) 50, 70, 267
FatI CATG 1 cut(s) 48
FauI CCCGC 2 cut(s) 28, 78
Fnu4HI GCNGC 2 cut(s) 33, 144
FokI GGATG 2 cut(s) 122, 200
Fsp4HI GCNGC 2 cut(s) 33, 144
GluI GCNGC 2 cut(s) 33, 144
GsuI CTGGAG 1 cut(s) 281
Hin1II CATG 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 1 cut(s) 73
HphI GGTGA 2 cut(s) 156, 228
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 100, 144, 178, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 149
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 2 cut(s) 118, 190
LpnPI CCDG 6 cut(s) 135, 189, 207, 240, 245, 267
Lsp1109I GCAGC 2 cut(s) 19, 155
LweI GCATC 3 cut(s) 134, 206, 233
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 120, 192
MboI GATC 2 cut(s) 118, 190
MboII GAAGA 2 cut(s) 122, 194
MluCI AATT 1 cut(s) 27
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 7 cut(s) 177, 180, 183, 252, 255, 258, 261
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 2 cut(s) 146, 218
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 29, 149
NdeII GATC 2 cut(s) 118, 190
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 34, 145
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 146
PvuII CAGCTG 2 cut(s) 146, 218
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 33, 144
Sau3AI GATC 2 cut(s) 118, 190
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 255
SetI ASST 5 cut(s) 148, 154, 169, 220, 244
SfaNI GCATC 3 cut(s) 134, 206, 233
SgeI CNNG 9 cut(s) 48, 61, 98, 134, 188, 206, 266, 267, 272
SinI GGWCC 1 cut(s) 89
Sse9I AATT 1 cut(s) 27
SsiI CCGC 3 cut(s) 23, 35, 85
StyD4I CCNGG 1 cut(s) 253
TasI AATT 1 cut(s) 27
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 2 cut(s) 32, 143
TspDTI ATGAA 4 cut(s) 95, 126, 144, 198
TspGWI ACGGA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.