Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

11263929 .. 11274942

Gene Structure 11014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGATGTACCCTGATCCTCAACAGCAGCAGCAACACCAACAGCAACAGCAGCAGCAGCAGCAACAACAACACTATCACCAGCAGCAGCAGCAACACCACCAGCACCAGCAGCAACACCATCAGCATCAGCAGCAAGGTGGAGACTTTCACAGGGGCCCACCGCCGATGATGCGTCAGCCGTCTGCTTCTTCTACTAACATGCCTCCGGATTATCACCACCCCTCCGCCCCTGGTCCTCCTGTTCCTCCTTATGATGTTCATGGTGATGGTTTTGGTGCAAAGAGGAACAGAAAGCAGACTCAGAGAAGGGCAGTTGATTACACCAGCACTGTCGTGCGGTATACACAGACTAGAATGTGGCAGCGGGATGCGAGGGATAGGACAGTATTGCAACCTACACCAGCAGCAGCAATTGACATGTTGCCGACAGTTGCCTATTCAAATAACCCATCTACGGGCTTTGCTGCAAAGTTTGTGCATACTTCCACAAACAAAGTCCGTAATTCAATTAATCGGGTTTTGTGGACTCCTCCTGGGAGGCGTCTTATTACAGGCTCTCAAAATGGGGAATTCACTCTTTGGAATGGCCAATCATTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGATCTATGGTCTGGAGTCATAATGAAAATTGGATGGTCTCTGGTGATGATGGAGGATCAATAAAGTATTGGCAGACCAACATGAATAATGTGAAGGCCAATAAATCTGCTCACAAAGAATCTGTTCAGGACTTAAGCTTCTGTAAGACTGACTTGAAGTTCTGTTCCTGTTCGAATGATACTTCTGTTAAAATATGGGATTTTGCACGGTGCCAAGAAGAGCGCACGTTGACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCTCTACTAGCTTCAGGTGGGAAAGACCAGCTTGTCAAACTTTGGGATGCTAAGTCAGGGCGAGAACTATGTTCATTTCATGGTCACAAAAATTTGGTGCAATCTGTTAAATGGAACCAAAATGGCAACTGGCTGCTAACTGCTTCTAAGGATCAAGTCATAAAGCTTTATGACATAAGGGCTATGAAGGAGCTTGAATCTTTCCGTGGGCATCGGAAGGAAGTGACTGCTCTGGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTTCTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAGACTCCCCAGGTTGAAATTGTTAATGCACACGATAACAGTGTGTGGGATCTCCAATGGCACCCTATTGGCTATATTCTTTGCAGTGGTAGCAATGATCACACAACAAAGTTTTGGTGCAGAAACAGGCCAGGAGACACTGGTCGCGATAAATTTAACATCAATCAGAGTCAAGGTTACGGTGATCAAAACTCTGCTTTTGCTGGTCGCATGACGGGTAATTTTCCATTACACGATGGACCACCAACTCCAGGACCATTTACTCCCGGGGGAACTCGAAATGAAGGAACCATTCCAGGGGTTGGAGTAGCTATGCCGTTAGCCATACCATCCCTTGACGCATCTATTCAGGGAGAACAACAGCAACCTCATGCACATTCAATGCCTTTAGGAGCTCCTCCTCTCCCACCTGGTCCACATCCTTCTCTTCTTGCTGCAAATCAGCAGCAACCATATCATCAAAATGCGCAACAGCAACATCAGCAACACCAAGGTCACCCACAACAAATGCCCCCTTTGCCTATGCCACCTCCAAATATGCCACAGCTACAGCCTCCATCCCATTTACCCTTGCTGCCGCATCCTCATTTACGTCCACCACCCCAAATGCCCCCACTCGGTATGCCATCTTCAGTGTCCGGATCTTTGCCTATGCCTTCATCAGTTCCAACATCACTTTCAATGCCAATGGGCATGCAAGGTACAATGAATCAGATGGTTCATCAATTGCCACAAGGTCATTATATGGGCATGAACCCACCTCCACCTGCTGGAGGTTTCCCAAATGGGATGCCGAACATGCAGGGCCCATCTAATGCAAGTGGAGGGCAAATGTATTCTCATGCTGGCACCTTCAATCGTGCACAATCTGGACAAATGCCAATGCTACCGGGGTATAATCCCTACCAGCCCAGGGGTCAATCCGGTATGCCTCAGCCTCCACCAGGGCCACCACCACATGGGCAAACACCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

734

Amino Acids

81.89

Weight (kDa)

8.89

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	118 - 405	2.7e-14	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	146 - 330	1.3e-25	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	160 - 238	2.7e-06	WDR3 second beta-propeller domain
WDR55	PF24796	162 - 239	7.4e-06	WDR55
Beta-prop_WDR3_1st	PF25173	163 - 315	6.5e-23	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	165 - 325	8.6e-26	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	166 - 339	6.5e-27	THOC3 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	169 - 255	2.6e-09	IFT140 first beta-propeller
WD40_Gbeta	PF25391	170 - 373	4.5e-20	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	174 - 331	3.9e-15	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	179 - 245	1.6e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	179 - 372	2.3e-31	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	200 - 316	1.4e-08	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	203 - 236	1e-05	WD domain, G-beta repeat
EIF3I	PF24805	204 - 286	1.8e-08	EIF3I
Beta-prop_TEP1_2nd	PF25047	213 - 383	1.4e-14	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	232 - 363	1.3e-28	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	232 - 322	6.6e-10	WDR3 second beta-propeller domain
WDR55	PF24796	241 - 404	5.5e-16	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	245 - 406	1.8e-18	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	261 - 405	4.7e-19	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	265 - 353	5.5e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st	PF25173	277 - 405	7.1e-29	WDR3 first beta-propeller domain
Beta-prop_IFT140_1st	PF23383	284 - 359	4.7e-06	IFT140 first beta-propeller
WD40	PF00400	285 - 321	4.3e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	287 - 368	1.4e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	288 - 408	6.2e-14	WDR3 second beta-propeller domain
EIF3I	PF24805	288 - 447	6e-14	EIF3I
Beta-prop_EML	PF23409	289 - 395	5.3e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin	PF25460	295 - 405	1.5e-06	Aladin seven-bladed propeller
Beta-prop_WDR19_1st	PF23389	299 - 446	3.6e-08	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	316 - 449	2.3e-10	WDR36/Utp21 first beta-propeller
WD40	PF00400	326 - 363	5.8e-08	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	327 - 450	3.4e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	332 - 449	6.4e-21	WDR5 beta-propeller domain
ANAPC4_WD40	PF12894	333 - 386	8.6e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_THOC3	PF25174	334 - 450	1.6e-22	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	334 - 402	2.1e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	338 - 418	2.1e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	370 - 448	3.1e-10	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	371 - 447	9.5e-06	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2002
AasI	GACNNNNNNGTC	1 cut(s)	947
Acc16I	TGCGCA	1 cut(s)	1695
Acc36I	ACCTGC	1 cut(s)	2002
AccB1I	GGYRCC	4 cut(s)	846, 903, 1287, 2075
AccB7I	CCANNNNNTGG	3 cut(s)	1529, 1997, 2186
AccI	GTMKAC	1 cut(s)	341
AccII	CGCG	1 cut(s)	1374
AccIII	TCCGGA	2 cut(s)	205, 1865
AciI	CCGC	5 cut(s)	161, 225, 337, 364, 1805
AclWI	GGATC	7 cut(s)	8, 700, 1074, 1194, 1207, 1284, 1876
AcoI	YGGCCR	2 cut(s)	586, 871
AcsI	RAATTY	3 cut(s)	569, 1006, 1379
AcuI	CTGAAG	3 cut(s)	599, 912, 1842
AcyI	GRCGYC	1 cut(s)	541
AfaI	GTAC	2 cut(s)	8, 1930
AflII	CTTAAG	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	9 cut(s)	441, 507, 605, 793, 1112, 1244, 1608, 1908, 2083
AjnI	CCWGG	9 cut(s)	229, 532, 1236, 1357, 1477, 1522, 1636, 2138, 2170
AjuI	GAANNNNNNNTTGG	2 cut(s)	1888, 1920
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	8 cut(s)	774, 926, 946, 1081, 1108, 1538, 1622, 1774
AluI	AGCT	8 cut(s)	774, 926, 946, 1081, 1108, 1538, 1622, 1774
Alw21I	GWGCWC	2 cut(s)	1624, 2092
Alw26I	GTCTC	5 cut(s)	135, 679, 921, 1223, 1356
Alw44I	GTGCAC	1 cut(s)	2088
AlwI	GGATC	7 cut(s)	8, 700, 1074, 1194, 1207, 1284, 1876
Ama87I	CYCGRG	1 cut(s)	1493
Aor13HI	TCCGGA	2 cut(s)	205, 1865
AoxI	GGCC	7 cut(s)	154, 586, 732, 871, 1355, 2032, 2174
ApaI	GGGCCC	2 cut(s)	158, 2036
ApaLI	GTGCAC	1 cut(s)	2088
ApoI	RAATTY	3 cut(s)	569, 1006, 1379
AseI	ATTAAT	1 cut(s)	510
Asp700I	GAANNNNTTC	2 cut(s)	609, 759
AspLEI	GCGC	2 cut(s)	861, 1696
AspS9I	GGNCC	9 cut(s)	154, 155, 233, 1466, 1481, 1640, 2032, 2033, 2174
AsuC2I	CCSGG	3 cut(s)	1494, 1495, 2118
AsuHPI	GGTGA	6 cut(s)	68, 206, 275, 692, 1421, 1715
AsuII	TTCGAA	1 cut(s)	809
AvaI	CYCGRG	1 cut(s)	1493
AvaII	GGWCC	4 cut(s)	233, 1466, 1481, 1640
BaeGI	GKGCMC	3 cut(s)	158, 2036, 2092
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BalI	TGGCCA	2 cut(s)	588, 873
BamHI	GGATCC	1 cut(s)	1199
BanI	GGYRCC	4 cut(s)	846, 903, 1287, 2075
BanII	GRGCYC	3 cut(s)	158, 1624, 2036
BarI	GAAGNNNNNNTAC	2 cut(s)	1840, 1872
Bbv12I	GWGCWC	2 cut(s)	1624, 2092
BbvCI	CCTCAGC	1 cut(s)	2160
BceAI	ACGGC	2 cut(s)	163, 1528
BciT130I	CCWGG	9 cut(s)	231, 534, 1238, 1359, 1479, 1524, 1638, 2140, 2172
BclI	TGATCA	3 cut(s)	625, 1324, 1411
BcnI	CCSGG	3 cut(s)	1494, 1495, 2118
BcoDI	GTCTC	5 cut(s)	135, 679, 921, 1223, 1356
BfaI	CTAG	2 cut(s)	351, 923
BfmI	CTRYAG	1 cut(s)	1775
BfrI	CTTAAG	1 cut(s)	769
BfuAI	ACCTGC	1 cut(s)	2002
BglII	AGATCT	1 cut(s)	638
Bme18I	GGWCC	4 cut(s)	233, 1466, 1481, 1640
BmeT110I	CYCGRG	1 cut(s)	1493
BmgT120I	GGNCC	9 cut(s)	154, 155, 233, 1466, 1481, 1640, 2032, 2033, 2174
BmsI	GCATC	9 cut(s)	133, 159, 358, 952, 1135, 1165, 1577, 1816, 2007
BoxI	GACNNNNGTC	1 cut(s)	1368
BpmI	CTGGAG	3 cut(s)	670, 1461, 2019
Bpu10I	CCTNAGC	1 cut(s)	2160
Bpu14I	TTCGAA	1 cut(s)	809
BpuMI	CCSGG	3 cut(s)	1494, 1495, 2118
BsaHI	GRCGYC	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	679
BsaWI	WCCGGW	3 cut(s)	205, 1865, 2150
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse1I	ACTGG	4 cut(s)	874, 905, 1049, 1372
Bse3DI	GCAATG	1 cut(s)	1327
BseAI	TCCGGA	2 cut(s)	205, 1865
BseBI	CCWGG	9 cut(s)	231, 534, 1238, 1359, 1479, 1524, 1638, 2140, 2172
BseMI	GCAATG	1 cut(s)	1327
BseMII	CTCAG	2 cut(s)	314, 2174
BseNI	ACTGG	4 cut(s)	874, 905, 1049, 1372
BseRI	GAGGAG	3 cut(s)	519, 1614, 1617
BseSI	GKGCMC	3 cut(s)	158, 2036, 2092
BsgI	GTGCAG	1 cut(s)	1366
Bsh1236I	CGCG	1 cut(s)	1374
BshFI	GGCC	7 cut(s)	156, 588, 734, 873, 1357, 2034, 2176
BshNI	GGYRCC	4 cut(s)	846, 903, 1287, 2075
BsiHKAI	GWGCWC	2 cut(s)	1624, 2092
BsiHKCI	CYCGRG	1 cut(s)	1493
BsiSI	CCGG	5 cut(s)	206, 1494, 1866, 2117, 2151
BsmAI	GTCTC	5 cut(s)	135, 679, 921, 1223, 1356
BsnI	GGCC	7 cut(s)	156, 588, 734, 873, 1357, 2034, 2176
Bso31I	GGTCTC	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	1493
Bsp119I	TTCGAA	1 cut(s)	809
Bsp120I	GGGCCC	2 cut(s)	154, 2032
Bsp1286I	GDGCHC	4 cut(s)	158, 1624, 2036, 2092
Bsp13I	TCCGGA	2 cut(s)	205, 1865
Bsp19I	CCATGG	1 cut(s)	874
Bsp68I	TCGCGA	1 cut(s)	1374
BspACI	CCGC	5 cut(s)	161, 225, 337, 364, 1805
BspANI	GGCC	7 cut(s)	156, 588, 734, 873, 1357, 2034, 2176
BspCNI	CTCAG	2 cut(s)	313, 2173
BspEI	TCCGGA	2 cut(s)	205, 1865
BspFNI	CGCG	1 cut(s)	1374
BspHI	TCATGA	2 cut(s)	622, 1165
BspMI	ACCTGC	1 cut(s)	2002
BspPI	GGATC	7 cut(s)	8, 700, 1074, 1194, 1207, 1284, 1876
BspQI	GCTCTTC	1 cut(s)	849
BspT104I	TTCGAA	1 cut(s)	809
BspT107I	GGYRCC	4 cut(s)	846, 903, 1287, 2075
BspTI	CTTAAG	1 cut(s)	769
BspTNI	GGTCTC	1 cut(s)	679
BsrDI	GCAATG	1 cut(s)	1327
BsrI	ACTGG	4 cut(s)	874, 905, 1049, 1372
BssNAI	GTATAC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	541
BssT1I	CCWWGG	2 cut(s)	874, 1717
Bst1107I	GTATAC	1 cut(s)	342
Bst2UI	CCWGG	9 cut(s)	231, 534, 1238, 1359, 1479, 1524, 1638, 2140, 2172
Bst4CI	ACNGT	6 cut(s)	331, 385, 430, 846, 1268, 1409
Bst6I	CTCTTC	3 cut(s)	849, 884, 1659
BstACI	GRCGYC	1 cut(s)	541
BstAFI	CTTAAG	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	1922, 2074
BstDEI	CTNAG	5 cut(s)	300, 966, 1062, 2160, 2199
BstDSI	CCRYGG	2 cut(s)	874, 1120
BstEII	GGTNACC	1 cut(s)	1721
BstENI	CCTNNNNNAGG	2 cut(s)	1998, 2169
BstFNI	CGCG	1 cut(s)	1374
BstHHI	GCGC	2 cut(s)	861, 1696
BstMAI	GTCTC	5 cut(s)	135, 679, 921, 1223, 1356
BstNI	CCWGG	9 cut(s)	231, 534, 1238, 1359, 1479, 1524, 1638, 2140, 2172
BstNSI	RCATGY	4 cut(s)	202, 421, 1924, 2029
BstPAI	GACNNNNGTC	1 cut(s)	1368
BstPI	GGTNACC	1 cut(s)	1721
BstSFI	CTRYAG	1 cut(s)	1775
BstSLI	GKGCMC	3 cut(s)	158, 2036, 2092
BstUI	CGCG	1 cut(s)	1374
BstX2I	RGATCY	4 cut(s)	638, 1199, 1276, 1868
BstYI	RGATCY	4 cut(s)	638, 1199, 1276, 1868
BstZ17I	GTATAC	1 cut(s)	342
BsuRI	GGCC	7 cut(s)	156, 588, 734, 873, 1357, 2034, 2176
BtgI	CCRYGG	2 cut(s)	874, 1120
BtsI	GCAGTG	1 cut(s)	1318
BtsIMutI	CAGTG	6 cut(s)	327, 1189, 1273, 1318, 1365, 1866
BtuMI	TCGCGA	1 cut(s)	1374
BveI	ACCTGC	1 cut(s)	2002
Cac8I	GCNNGC	2 cut(s)	1922, 2074
CciI	TCATGA	2 cut(s)	622, 1165
CfoI	GCGC	2 cut(s)	861, 1696
Cfr13I	GGNCC	9 cut(s)	154, 155, 233, 1466, 1481, 1640, 2032, 2033, 2174
Cfr9I	CCCGGG	1 cut(s)	1493
CseI	GACGC	3 cut(s)	161, 530, 1574
CsiI	ACCWGGT	1 cut(s)	1636
Csp6I	GTAC	2 cut(s)	7, 1929
CviQI	GTAC	2 cut(s)	7, 1929
DdeI	CTNAG	5 cut(s)	300, 966, 1062, 2160, 2199
DrdI	GACNNNNNNGTC	1 cut(s)	947
DseDI	GACNNNNNNGTC	1 cut(s)	947
EaeI	YGGCCR	2 cut(s)	586, 871
Eam1104I	CTCTTC	3 cut(s)	849, 884, 1659
EarI	CTCTTC	3 cut(s)	849, 884, 1659
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	1622
Eco130I	CCWWGG	2 cut(s)	874, 1717
Eco24I	GRGCYC	3 cut(s)	158, 1624, 2036
Eco31I	GGTCTC	1 cut(s)	679
Eco47I	GGWCC	4 cut(s)	233, 1466, 1481, 1640
Eco53kI	GAGCTC	1 cut(s)	1622
Eco57I	CTGAAG	3 cut(s)	599, 912, 1842
Eco88I	CYCGRG	1 cut(s)	1493
Eco91I	GGTNACC	1 cut(s)	1721
EcoICRI	GAGCTC	1 cut(s)	1622
EcoNI	CCTNNNNNAGG	2 cut(s)	1998, 2169
EcoO109I	RGGNCCY	2 cut(s)	154, 2032
EcoO65I	GGTNACC	1 cut(s)	1721
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	9 cut(s)	229, 532, 1236, 1357, 1477, 1522, 1636, 2138, 2170
EcoT14I	CCWWGG	2 cut(s)	874, 1717
EcoT38I	GRGCYC	3 cut(s)	158, 1624, 2036
ErhI	CCWWGG	2 cut(s)	874, 1717
FalI	AAGNNNNNCTT	4 cut(s)	773, 805, 930, 962
FauI	CCCGC	1 cut(s)	357
FbaI	TGATCA	3 cut(s)	625, 1324, 1411
FblI	GTMKAC	1 cut(s)	341
FriOI	GRGCYC	3 cut(s)	158, 1624, 2036
FspBI	CTAG	2 cut(s)	351, 923
FspI	TGCGCA	1 cut(s)	1695
GlaI	GCGC	2 cut(s)	860, 1695
GsuI	CTGGAG	3 cut(s)	670, 1461, 2019
HaeIII	GGCC	7 cut(s)	156, 588, 734, 873, 1357, 2034, 2176
HapII	CCGG	5 cut(s)	206, 1494, 1866, 2117, 2151
HgaI	GACGC	3 cut(s)	161, 530, 1574
HhaI	GCGC	2 cut(s)	861, 1696
Hin1I	GRCGYC	1 cut(s)	541
Hin6I	GCGC	2 cut(s)	859, 1694
HinP1I	GCGC	2 cut(s)	859, 1694
HincII	GTYRAC	2 cut(s)	867, 898
HindII	GTYRAC	2 cut(s)	867, 898
HindIII	AAGCTT	2 cut(s)	772, 1079
HinfI	GANTC	9 cut(s)	298, 526, 610, 652, 755, 1112, 1231, 1396, 1936
HpaII	CCGG	5 cut(s)	206, 1494, 1866, 2117, 2151
HphI	GGTGA	6 cut(s)	68, 206, 275, 692, 1421, 1715
Hpy166II	GTNNAC	7 cut(s)	342, 525, 867, 898, 1643, 1823, 2090
Hpy188I	TCNGA	6 cut(s)	303, 638, 1131, 1195, 1395, 1941
Hpy188III	TCNNGA	8 cut(s)	206, 623, 649, 764, 1166, 1373, 1866, 2097
Hpy8I	GTNNAC	7 cut(s)	342, 525, 867, 898, 1643, 1823, 2090
HpyAV	CCTTC	8 cut(s)	300, 724, 1096, 1126, 1505, 1659, 1893, 2089
HpyCH4III	ACNGT	6 cut(s)	331, 385, 430, 846, 1268, 1409
HpyCH4IV	ACGT	2 cut(s)	863, 1819
HpyF3I	CTNAG	5 cut(s)	300, 966, 1062, 2160, 2199
HpySE526I	ACGT	2 cut(s)	863, 1819
Hsp92I	GRCGYC	1 cut(s)	541
HspAI	GCGC	2 cut(s)	859, 1694
Kpn2I	TCCGGA	2 cut(s)	205, 1865
Ksp22I	TGATCA	3 cut(s)	625, 1324, 1411
LguI	GCTCTTC	1 cut(s)	849
LmnI	GCTCC	3 cut(s)	1105, 1619, 1627
LweI	GCATC	9 cut(s)	133, 159, 358, 952, 1135, 1165, 1577, 1816, 2007
MabI	ACCWGGT	1 cut(s)	1636
MaeI	CTAG	2 cut(s)	351, 923
MaeII	ACGT	2 cut(s)	863, 1819
MaeIII	GTNAC	4 cut(s)	998, 1138, 1403, 1721
MboII	GAAGA	7 cut(s)	180, 605, 866, 901, 1181, 1646, 1848
MfeI	CAATTG	2 cut(s)	411, 1952
MflI	RGATCY	4 cut(s)	638, 1199, 1276, 1868
MhlI	GDGCHC	4 cut(s)	158, 1624, 2036, 2092
MlsI	TGGCCA	2 cut(s)	588, 873
MluNI	TGGCCA	2 cut(s)	588, 873
MlyI	GAGTC	5 cut(s)	292, 520, 661, 1225, 1405
MmeI	TCCRAC	2 cut(s)	1510, 1919
Mox20I	TGGCCA	2 cut(s)	588, 873
MroI	TCCGGA	2 cut(s)	205, 1865
MroXI	GAANNNNTTC	2 cut(s)	609, 759
MscI	TGGCCA	2 cut(s)	588, 873
MseI	TTAA	7 cut(s)	510, 597, 770, 825, 1023, 1251, 1383
MslI	CAYNNNNRTG	3 cut(s)	264, 332, 1689
Msp20I	TGGCCA	2 cut(s)	588, 873
MspA1I	CMGCKG	1 cut(s)	364
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	5 cut(s)	206, 1494, 1866, 2117, 2151
MunI	CAATTG	2 cut(s)	411, 1952
MvaI	CCWGG	9 cut(s)	231, 534, 1238, 1359, 1479, 1524, 1638, 2140, 2172
MvnI	CGCG	1 cut(s)	1374
NciI	CCSGG	3 cut(s)	1494, 1495, 2118
NcoI	CCATGG	1 cut(s)	874
NmuCI	GTSAC	3 cut(s)	998, 1138, 1721
NruI	TCGCGA	1 cut(s)	1374
NsbI	TGCGCA	1 cut(s)	1695
NspI	RCATGY	4 cut(s)	202, 421, 1924, 2029
NspV	TTCGAA	1 cut(s)	809
OliI	CACNNNNGTG	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	1924
PagI	TCATGA	2 cut(s)	622, 1165
PaqCI	CACCTGC	1 cut(s)	2002
PasI	CCCWGGG	1 cut(s)	2139
PciI	ACATGT	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	849
PdmI	GAANNNNTTC	2 cut(s)	609, 759
PfeI	GAWTC	4 cut(s)	610, 755, 1112, 1936
PflMI	CCANNNNNTGG	3 cut(s)	1529, 1997, 2186
PfoI	TCCNGGA	1 cut(s)	1477
PleI	GAGTC	5 cut(s)	292, 520, 660, 1225, 1404
PpsI	GAGTC	5 cut(s)	292, 520, 660, 1225, 1404
PscI	ACATGT	1 cut(s)	417
PshAI	GACNNNNGTC	1 cut(s)	1368
PshBI	ATTAAT	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	1624
Psp6I	CCWGG	9 cut(s)	229, 532, 1236, 1357, 1477, 1522, 1636, 2138, 2170
PspEI	GGTNACC	1 cut(s)	1721
PspGI	CCWGG	9 cut(s)	229, 532, 1236, 1357, 1477, 1522, 1636, 2138, 2170
PspOMI	GGGCCC	2 cut(s)	154, 2032
PspPI	GGNCC	9 cut(s)	154, 155, 233, 1466, 1481, 1640, 2032, 2033, 2174
PsuI	RGATCY	4 cut(s)	638, 1199, 1276, 1868
RruI	TCGCGA	1 cut(s)	1374
RsaI	GTAC	2 cut(s)	8, 1930
RsaNI	GTAC	2 cut(s)	7, 1929
RseI	CAYNNNNRTG	3 cut(s)	264, 332, 1689
SacI	GAGCTC	1 cut(s)	1624
SapI	GCTCTTC	1 cut(s)	849
SaqAI	TTAA	7 cut(s)	510, 597, 770, 825, 1023, 1251, 1383
Sau96I	GGNCC	9 cut(s)	154, 155, 233, 1466, 1481, 1640, 2032, 2033, 2174
SchI	GAGTC	5 cut(s)	292, 520, 661, 1225, 1405
SduI	GDGCHC	4 cut(s)	158, 1624, 2036, 2092
SexAI	ACCWGGT	1 cut(s)	1636
SfaNI	GCATC	9 cut(s)	133, 159, 358, 952, 1135, 1165, 1577, 1816, 2007
SfcI	CTRYAG	1 cut(s)	1775
SfuI	TTCGAA	1 cut(s)	809
SinI	GGWCC	4 cut(s)	233, 1466, 1481, 1640
SmaI	CCCGGG	1 cut(s)	1495
SmiMI	CAYNNNNRTG	3 cut(s)	264, 332, 1689
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SphI	GCATGC	1 cut(s)	1924
SsiI	CCGC	5 cut(s)	161, 225, 337, 364, 1805
SspI	AATATT	1 cut(s)	1175
SspMI	CTAG	2 cut(s)	351, 923
SstI	GAGCTC	1 cut(s)	1624
StyI	CCWWGG	2 cut(s)	874, 1717
TaaI	ACNGT	6 cut(s)	331, 385, 430, 846, 1268, 1409
TaiI	ACGT	2 cut(s)	866, 1822
TaqI	TCGA	2 cut(s)	809, 1504
TauI	GCSGC	1 cut(s)	1807
TfiI	GAWTC	4 cut(s)	610, 755, 1112, 1936
Tru1I	TTAA	7 cut(s)	510, 597, 770, 825, 1023, 1251, 1383
Tru9I	TTAA	7 cut(s)	510, 597, 770, 825, 1023, 1251, 1383
TscAI	CASTG	6 cut(s)	334, 1189, 1273, 1318, 1372, 1866
TseFI	GTSAC	3 cut(s)	998, 1138, 1721
Tsp45I	GTSAC	3 cut(s)	998, 1138, 1721
TspGWI	ACGGA	2 cut(s)	488, 1109
TspMI	CCCGGG	1 cut(s)	1493
TspRI	CASTG	6 cut(s)	334, 1189, 1273, 1318, 1372, 1866
Van91I	CCANNNNNTGG	3 cut(s)	1529, 1997, 2186
Vha464I	CTTAAG	1 cut(s)	769
VneI	GTGCAC	1 cut(s)	2088
VpaK11BI	GGWCC	4 cut(s)	233, 1466, 1481, 1640
VspI	ATTAAT	1 cut(s)	510
XagI	CCTNNNNNAGG	2 cut(s)	1998, 2169
XapI	RAATTY	3 cut(s)	569, 1006, 1379
XceI	RCATGY	4 cut(s)	202, 421, 1924, 2029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1217
XmaI	CCCGGG	1 cut(s)	1493
XmiI	GTMKAC	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	609, 759
XspI	CTAG	2 cut(s)	351, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.