Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

66621239 .. 66621654

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCTCTACTGCTAGTCTCCAAATCCCCACTTTCCTCTCCCTCAACGCCCCACCTTCTCCTTCCCCAACCACTCCACCTCCTTATTCTCTTCCTTCTCCACCTCCTCCCGCCCTCCACGCCCTCGTCTCACTCTCTCTCTCTCTCGCCCCCATTGCCGCCTCTCTTAAGGAAAACCTGGGCCAGCATGGGAAGACTTGGAACGATGTGACTAGCTTGAACAGCTGGGTTGTTTGGGGCTATTACCGCCTTGTCAATTCTGTCAACTCGTTTGAGCCACAATTACAAAGGCTCACTGATGACCAGGTTTGCTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

107

Amino Acids

11.49

Weight (kDa)

5.98

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	111, 159, 247
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	177, 303
AluBI	AGCT	2 cut(s)	216, 225
AluI	AGCT	2 cut(s)	216, 225
Alw26I	GTCTC	2 cut(s)	23, 133
AoxI	GGCC	2 cut(s)	3, 181
AspS9I	GGNCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	179, 305
BcoDI	GTCTC	2 cut(s)	23, 133
BfaI	CTAG	2 cut(s)	15, 213
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	179, 305
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	179, 305
BpiI	GAAGAC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	179, 305
BseDI	CCNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	225
BshFI	GGCC	2 cut(s)	5, 183
BsmAI	GTCTC	2 cut(s)	23, 133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	5, 183
BspACI	CCGC	3 cut(s)	111, 159, 247
BspANI	GGCC	2 cut(s)	5, 183
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	179, 305
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	185, 314
BstMAI	GTCTC	2 cut(s)	23, 133
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 119, 155, 222, 246
BstNI	CCWGG	2 cut(s)	179, 305
BstSCI	CCNGG	2 cut(s)	177, 303
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	5, 183
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	185, 314
Cfr13I	GGNCC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	303
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	8 cut(s)	5, 183, 216, 225, 240, 277, 292, 316
CviKI_1	RGCY	8 cut(s)	5, 183, 216, 225, 240, 277, 292, 316
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	177, 303
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	191
FaiI	YATR	1 cut(s)	189
FatI	CATG	1 cut(s)	187
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	15, 213
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	5, 183
Hin1II	CATG	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	265
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	66, 72, 105
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 119, 155, 222, 246
Hsp92II	CATG	1 cut(s)	191
LpnPI	CCDG	7 cut(s)	164, 191, 197, 211, 290, 298, 317
MabI	ACCWGGT	1 cut(s)	303
MaeI	CTAG	2 cut(s)	15, 213
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	83, 205
MluCI	AATT	2 cut(s)	256, 281
MnlI	CCTC	9 cut(s)	16, 47, 53, 90, 114, 117, 125, 134, 172
MseI	TTAA	2 cut(s)	168, 319
MspA1I	CMGCKG	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	179, 305
MvaI	CCWGG	2 cut(s)	179, 305
MwoI	GCNNNNNNNGC	5 cut(s)	11, 119, 155, 222, 246
NlaIII	CATG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	177, 303
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	2 cut(s)	177, 303
PspPI	GGNCC	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	168, 319
SatI	GCNGC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	179, 305
SetI	ASST	7 cut(s)	58, 82, 106, 180, 218, 227, 309
SexAI	ACCWGGT	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	256, 281
SsiI	CCGC	3 cut(s)	111, 159, 247
SspMI	CTAG	2 cut(s)	15, 213
StyD4I	CCNGG	2 cut(s)	177, 303
TasI	AATT	2 cut(s)	256, 281
TauI	GCSGC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	168, 319
Tru9I	TTAA	2 cut(s)	168, 319
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	167
XspI	CTAG	2 cut(s)	15, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.