Rmu_ssc0000175.1_g000031

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000175.1
Physical Location & Seq
Reverse (-)
151416 .. 152670
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000175.1_g000031.1.cds

Sequence Viewer

Length: 1203 bp
atggccccagaccactcctacgcccagaccaccacagttgattacaccattaacaacccatttgctgcccagtttgtgcgctcttgcacaaattacagagcccgtgcttcttcgatcaatcgagttttatggacaccttctgggaggcgtcttatcacaggctctcaaaacggggagttcactctctggaatggtgagtcattcaaacatgaattgaggattcagggtcatgatcacgcaatcaggtccatggcgtggagttttgatgatcaagattggatctctggtgatgatgggggcgctctggaatggtccatggcgtggagttttgatgatcaagattggatctctggtgatgatgggggcacaatcaggtattggaagagtaacatgattaatgtgctagtcaatgaatctgctcaccatgaatcggttcgggacctgagcttctgtcggactaatttgaagttttgttcatgttccgatgatactacggttaaaatctgggattttgaacggtgccaacaggagaagacattgaccggccatggttggaatgtgacgagtgttgactggcaccccacaaactctctgatagcttcgggtgggtgggacagtgttgtcaaactgtgggatgctaggtcagggagagaactctgttctttttatgatcacaaaaattgggtgcattctgtcaagtggaaccgaaatggtaactggctgctgactgcttccaaggatcaagtcattaagctttacgacttgagggctatgaaggaacttagatctttccgcggccatcagaacaaagtgactgctctagcttggcatcctcttaccgaagattattttgtcagtgggagtagtgatggatccattttccattggcttgttgggcatcatactccccaggttgaaattcctaatgcacacactagcagttacaataataatagtgtgtgggatctccagtggcatcctattggtcatatgatttgtagtggtggcaatgatcgcaccacaaagttttggtgcagaacagcagataaatctaaattcactcagaatcaaccttgtcacatgaacagtaatgttccttttccatttcatggaccaccaactattgctactactcgagaccaaggaacccttggttcaggaggtgttggaaccattatacctggtgttggaattgcggtttaa

Protein Analysis

400

Amino Acids

45.33

Weight (kDa)

6.45

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 519, 576
AccB7I CCANNNNNTGG 3 cut(s) 255, 321, 1109
AccII CGCG 1 cut(s) 795
AciI CCGC 3 cut(s) 793, 795, 1196
AclWI GGATC 6 cut(s) 287, 353, 747, 867, 880, 972
AcoI YGGCCR 2 cut(s) 544, 796
AcsI RAATTY 2 cut(s) 918, 1055
AcyI GRCGYC 1 cut(s) 148
AfiI CCNNNNNNNGG 5 cut(s) 255, 321, 430, 1109, 1187
AgsI TTSAA 4 cut(s) 205, 466, 515, 917
AjnI CCWGG 2 cut(s) 909, 1180
AluBI AGCT 4 cut(s) 447, 599, 754, 824
AluI AGCT 4 cut(s) 447, 599, 754, 824
Alw26I GTCTC 1 cut(s) 1131
AlwI GGATC 6 cut(s) 287, 353, 747, 867, 880, 972
Ama87I CYCGRG 1 cut(s) 1134
AoxI GGCC 3 cut(s) 3, 544, 796
ApeKI GCWGC 2 cut(s) 65, 721
ApoI RAATTY 2 cut(s) 918, 1055
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 81, 302
AspS9I GGNCC 5 cut(s) 4, 246, 312, 439, 1112
AsuHPI GGTGA 4 cut(s) 206, 299, 365, 413
AvaI CYCGRG 1 cut(s) 1134
AvaII GGWCC 4 cut(s) 246, 312, 439, 1112
BaeGI GKGCMC 1 cut(s) 368
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BamHI GGATCC 1 cut(s) 872
BanI GGYRCC 2 cut(s) 519, 576
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 52, 708
BccI CCATC 4 cut(s) 287, 353, 807, 863
BciT130I CCWGG 2 cut(s) 911, 1182
BclI TGATCA 4 cut(s) 232, 268, 334, 670
BcoDI GTCTC 1 cut(s) 1131
BfaI CTAG 4 cut(s) 404, 639, 821, 936
BfoI RGCGCY 1 cut(s) 303
BglII AGATCT 1 cut(s) 785
BisI GCNGC 3 cut(s) 66, 722, 796
BlsI GCNGC 3 cut(s) 67, 723, 797
Bme1390I CCNGG 2 cut(s) 911, 1182
Bme18I GGWCC 4 cut(s) 246, 312, 439, 1112
BmeT110I CYCGRG 1 cut(s) 1134
BmgT120I GGNCC 5 cut(s) 4, 246, 312, 439, 1112
BmiI GGNNCC 8 cut(s) 6, 440, 521, 578, 704, 874, 1147, 1171
BmrFI CCNGG 2 cut(s) 911, 1182
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 4 cut(s) 625, 838, 907, 985
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 953
Bpu10I CCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 784
BsaHI GRCGYC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 1131
BsaJI CCNNGG 8 cut(s) 249, 315, 547, 735, 793, 909, 1141, 1150
Bsc4I CCNNNNNNNGG 5 cut(s) 255, 321, 430, 1109, 1187
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 4 cut(s) 70, 578, 722, 970
Bse3DI GCAATG 1 cut(s) 1015
BseBI CCWGG 2 cut(s) 911, 1182
BseDI CCNNGG 8 cut(s) 249, 315, 547, 735, 793, 909, 1141, 1150
BseGI GGATG 3 cut(s) 640, 829, 976
BseLI CCNNNNNNNGG 5 cut(s) 255, 321, 430, 1109, 1187
BseMI GCAATG 1 cut(s) 1015
BseMII CTCAG 2 cut(s) 434, 1076
BseNI ACTGG 4 cut(s) 70, 578, 722, 970
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 2 cut(s) 52, 708
BsgI GTGCAG 1 cut(s) 1054
Bsh1236I CGCG 1 cut(s) 795
BshFI GGCC 3 cut(s) 5, 546, 798
BshNI GGYRCC 2 cut(s) 519, 576
BsiHKCI CYCGRG 1 cut(s) 1134
BsiSI CCGG 1 cut(s) 543
BslFI GGGAC 2 cut(s) 452, 626
BslI CCNNNNNNNGG 5 cut(s) 255, 321, 430, 1109, 1187
BsmAI GTCTC 1 cut(s) 1131
BsmFI GGGAC 2 cut(s) 452, 626
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 3 cut(s) 5, 546, 798
Bso31I GGTCTC 1 cut(s) 1131
BsoBI CYCGRG 1 cut(s) 1134
Bsp1286I GDGCHC 2 cut(s) 103, 368
Bsp19I CCATGG 3 cut(s) 249, 315, 547
BspACI CCGC 3 cut(s) 793, 795, 1196
BspANI GGCC 3 cut(s) 5, 546, 798
BspCNI CTCAG 2 cut(s) 435, 1075
BspFNI CGCG 1 cut(s) 795
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 8 cut(s) 6, 440, 521, 578, 704, 874, 1147, 1171
BspPI GGATC 6 cut(s) 287, 353, 747, 867, 880, 972
BspT107I GGYRCC 2 cut(s) 519, 576
BspTNI GGTCTC 1 cut(s) 1131
BsrDI GCAATG 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 4 cut(s) 70, 578, 722, 970
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 8 cut(s) 249, 315, 547, 735, 793, 909, 1141, 1150
BssNI GRCGYC 1 cut(s) 148
BssT1I CCWWGG 6 cut(s) 249, 315, 547, 735, 1141, 1150
Bst2UI CCWGG 2 cut(s) 911, 1182
Bst4CI ACNGT 6 cut(s) 37, 496, 519, 617, 630, 1088
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 443, 782, 1062
BstDSI CCRYGG 4 cut(s) 249, 315, 547, 793
BstF5I GGATG 3 cut(s) 640, 829, 976
BstFNI CGCG 1 cut(s) 795
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 81, 302
BstMAI GTCTC 1 cut(s) 1131
BstMWI GCNNNNNNNGC 2 cut(s) 895, 1014
BstNI CCWGG 2 cut(s) 911, 1182
BstSCI CCNGG 2 cut(s) 909, 1180
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 1 cut(s) 795
BstV1I GCAGC 2 cut(s) 52, 708
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 5 cut(s) 279, 345, 785, 872, 964
BstYI RGATCY 5 cut(s) 279, 345, 785, 872, 964
BsuRI GGCC 3 cut(s) 5, 546, 798
BtgI CCRYGG 4 cut(s) 249, 315, 547, 793
BtsCI GGATG 3 cut(s) 640, 829, 976
BtsIMutI CAGTG 3 cut(s) 622, 862, 977
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 81, 302
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 5 cut(s) 4, 246, 312, 439, 1112
Cfr42I CCGCGG 1 cut(s) 796
CseI GACGC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 1180
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
DdeI CTNAG 3 cut(s) 443, 782, 1062
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 2 cut(s) 544, 796
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 6 cut(s) 249, 315, 547, 735, 1141, 1150
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 1131
Eco47I GGWCC 4 cut(s) 246, 312, 439, 1112
Eco88I CYCGRG 1 cut(s) 1134
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 909, 1180
EcoT14I CCWWGG 6 cut(s) 249, 315, 547, 735, 1141, 1150
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 6 cut(s) 249, 315, 547, 735, 1141, 1150
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FaqI GGGAC 2 cut(s) 452, 626
FauNDI CATATG 1 cut(s) 990
FbaI TGATCA 4 cut(s) 232, 268, 334, 670
Fnu4HI GCNGC 3 cut(s) 66, 722, 796
FokI GGATG 3 cut(s) 647, 816, 963
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 66, 722, 796
FspBI CTAG 4 cut(s) 404, 639, 821, 936
GlaI GCGC 2 cut(s) 80, 301
GluI GCNGC 3 cut(s) 66, 722, 796
GsuI CTGGAG 1 cut(s) 953
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 3 cut(s) 5, 546, 798
HapII CCGG 1 cut(s) 543
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 81, 302
Hin1I GRCGYC 1 cut(s) 148
Hin6I GCGC 2 cut(s) 79, 300
HinP1I GCGC 2 cut(s) 79, 300
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 5 cut(s) 197, 220, 413, 428, 1066
HpaII CCGG 1 cut(s) 543
HphI GGTGA 4 cut(s) 206, 299, 365, 413
Hpy166II GTNNAC 2 cut(s) 180, 571
Hpy188I TCNGA 5 cut(s) 456, 484, 594, 804, 1065
Hpy188III TCNNGA 8 cut(s) 187, 230, 272, 305, 338, 437, 1136, 1158
Hpy8I GTNNAC 2 cut(s) 180, 571
HpyAV CCTTC 2 cut(s) 147, 769
HpyCH4III ACNGT 6 cut(s) 37, 496, 519, 617, 630, 1088
HpyCH4V TGCA 4 cut(s) 87, 688, 929, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 895, 1014
HpyF3I CTNAG 3 cut(s) 443, 782, 1062
Hsp92I GRCGYC 1 cut(s) 148
HspAI GCGC 2 cut(s) 79, 300
Ksp22I TGATCA 4 cut(s) 232, 268, 334, 670
KspI CCGCGG 1 cut(s) 796
Lsp1109I GCAGC 2 cut(s) 52, 708
LweI GCATC 4 cut(s) 625, 838, 907, 985
MabI ACCWGGT 1 cut(s) 1180
MaeI CTAG 4 cut(s) 404, 639, 821, 936
MaeIII GTNAC 6 cut(s) 386, 559, 713, 811, 941, 1076
MboII GAAGA 4 cut(s) 102, 394, 544, 854
MflI RGATCY 5 cut(s) 279, 345, 785, 872, 964
MhlI GDGCHC 2 cut(s) 103, 368
MluCI AATT 7 cut(s) 91, 212, 460, 679, 918, 1055, 1191
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 4 cut(s) 434, 533, 1147, 1168
MnlI CCTC 5 cut(s) 138, 210, 759, 843, 1154
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 5 cut(s) 51, 396, 498, 750, 1201
MspA1I CMGCKG 1 cut(s) 795
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 2 cut(s) 911, 1182
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 911, 1182
MvnI CGCG 1 cut(s) 795
MwoI GCNNNNNNNGC 2 cut(s) 895, 1014
NcoI CCATGG 3 cut(s) 249, 315, 547
NdeI CATATG 1 cut(s) 990
NlaIV GGNNCC 8 cut(s) 6, 440, 521, 578, 704, 874, 1147, 1171
NmuCI GTSAC 3 cut(s) 559, 811, 1076
PaeR7I CTCGAG 1 cut(s) 1134
PagI TCATGA 1 cut(s) 229
PctI GAATGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 4 cut(s) 220, 413, 428, 1066
PflMI CCANNNNNTGG 3 cut(s) 255, 321, 1109
PkrI GCNGC 3 cut(s) 67, 723, 797
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 439
PshBI ATTAAT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 909, 1180
PspGI CCWGG 2 cut(s) 909, 1180
PspN4I GGNNCC 8 cut(s) 6, 440, 521, 578, 704, 874, 1147, 1171
PspPI GGNCC 5 cut(s) 4, 246, 312, 439, 1112
PspPPI RGGWCCY 1 cut(s) 439
PsuI RGATCY 5 cut(s) 279, 345, 785, 872, 964
SacII CCGCGG 1 cut(s) 796
SaqAI TTAA 5 cut(s) 51, 396, 498, 750, 1201
SatI GCNGC 3 cut(s) 66, 722, 796
Sau96I GGNCC 5 cut(s) 4, 246, 312, 439, 1112
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 911, 1182
SduI GDGCHC 2 cut(s) 103, 368
SexAI ACCWGGT 1 cut(s) 1180
SfaNI GCATC 4 cut(s) 625, 838, 907, 985
Sfr274I CTCGAG 1 cut(s) 1134
Sfr303I CCGCGG 1 cut(s) 796
SgrBI CCGCGG 1 cut(s) 796
SinI GGWCC 4 cut(s) 246, 312, 439, 1112
SlaI CTCGAG 1 cut(s) 1134
SmlI CTYRAG 2 cut(s) 763, 1134
SmoI CTYRAG 2 cut(s) 763, 1134
Sse9I AATT 7 cut(s) 91, 212, 460, 679, 918, 1055, 1191
SsiI CCGC 3 cut(s) 793, 795, 1196
SspMI CTAG 4 cut(s) 404, 639, 821, 936
StyD4I CCNGG 2 cut(s) 909, 1180
StyI CCWWGG 6 cut(s) 249, 315, 547, 735, 1141, 1150
TaaI ACNGT 6 cut(s) 37, 496, 519, 617, 630, 1088
TaqI TCGA 3 cut(s) 113, 121, 1135
TasI AATT 7 cut(s) 91, 212, 460, 679, 918, 1055, 1191
TauI GCSGC 1 cut(s) 798
TfiI GAWTC 4 cut(s) 220, 413, 428, 1066
Tru1I TTAA 5 cut(s) 51, 396, 498, 750, 1201
Tru9I TTAA 5 cut(s) 51, 396, 498, 750, 1201
TscAI CASTG 3 cut(s) 622, 862, 977
TseFI GTSAC 3 cut(s) 559, 811, 1076
TseI GCWGC 2 cut(s) 65, 721
Tsp45I GTSAC 3 cut(s) 559, 811, 1076
TspDTI ATGAA 7 cut(s) 225, 426, 441, 465, 788, 1097, 1097
TspRI CASTG 3 cut(s) 622, 862, 977
Van91I CCANNNNNTGG 3 cut(s) 255, 321, 1109
VpaK11BI GGWCC 4 cut(s) 246, 312, 439, 1112
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 2 cut(s) 918, 1055
XcmI CCANNNNNNNNNTGG 2 cut(s) 890, 1148
XhoI CTCGAG 1 cut(s) 1134
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 4 cut(s) 404, 639, 821, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.