RLG00000012304

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000356
Physical Location & Seq
Reverse (-)
17335233 .. 17335636
404 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012304

Sequence Viewer

Length: 366 bp
ATGGAGATCTATTCTTCTCGGACGGCGATTAATTCAACCGCGGAAGCAACGCATAAGACCCATGGCTCTACACTGTTCGACGCCGGTTCTGTCCGACTCGCGACGTCGTCGAGGAGGTCATCACCTGCTTCGATGAGATCGATCTCCACCGCTCGACCCGAAGACCCTATTCAGCGAGGGCCTCAGCTCCGTTTTGCAGAACCACCAACTGCTGTCATTTCAACTTCGGGCTCCGGCGAGTTTGGATTTGTTTCAGTGACCGACCAGAGTCGAATTCGATTCAGGCCTCGTCTCCAATTCGATCCTTTCAGCACCAGAGGAGGAGTCATGGATGAAACGACGTCGTCCGGTGCCTTAGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.0

Weight (kDa)

9.91

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
AatII GACGTC 2 cut(s) 107, 344
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 350
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 2 cut(s) 41, 101
AciI CCGC 3 cut(s) 39, 41, 150
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 3 cut(s) 81, 104, 341
AgsI TTSAA 2 cut(s) 36, 222
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 296
AoxI GGCC 2 cut(s) 179, 284
ApoI RAATTY 1 cut(s) 273
AseI ATTAAT 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 232, 352
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 140
BsaHI GRCGYC 3 cut(s) 81, 104, 341
BsaJI CCNNGG 2 cut(s) 39, 61
BsaWI WCCGGW 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 39, 61
BseGI GGATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 3 cut(s) 127, 333, 336
Bsh1236I CGCG 2 cut(s) 41, 101
BshFI GGCC 2 cut(s) 181, 286
BshNI GGYRCC 1 cut(s) 350
BshVI ATCGAT 1 cut(s) 140
BsiSI CCGG 3 cut(s) 84, 234, 348
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
BsnI GGCC 2 cut(s) 181, 286
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 4 cut(s) 6, 137, 141, 301
Bsp19I CCATGG 1 cut(s) 61
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 3 cut(s) 39, 41, 150
BspANI GGCC 2 cut(s) 181, 286
BspCNI CTCAG 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 140
BspFNI CGCG 2 cut(s) 41, 101
BspLI GGNNCC 2 cut(s) 232, 352
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 39, 61
BssMI GATC 4 cut(s) 6, 137, 141, 301
BssNI GRCGYC 3 cut(s) 81, 104, 341
BssT1I CCWWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 75
BstACI GRCGYC 3 cut(s) 81, 104, 341
BstDEI CTNAG 2 cut(s) 183, 355
BstDSI CCRYGG 2 cut(s) 39, 61
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 2 cut(s) 41, 101
BstKTI GATC 4 cut(s) 9, 140, 144, 304
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 4 cut(s) 6, 137, 141, 301
BstPAI GACNNNNGTC 1 cut(s) 267
BstUI CGCG 2 cut(s) 41, 101
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 140
BsuRI GGCC 2 cut(s) 181, 286
BsuTUI ATCGAT 1 cut(s) 140
BtgI CCRYGG 2 cut(s) 39, 61
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 71, 261
BtuMI TCGCGA 1 cut(s) 101
BveI ACCTGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 179
Cfr42I CCGCGG 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 140
CseI GACGC 1 cut(s) 89
CviAII CATG 2 cut(s) 62, 328
CviJI RGCY 5 cut(s) 66, 181, 187, 231, 286
CviKI_1 RGCY 5 cut(s) 66, 181, 187, 231, 286
DdeI CTNAG 2 cut(s) 183, 355
DpnI GATC 4 cut(s) 8, 139, 143, 303
DpnII GATC 4 cut(s) 6, 137, 141, 301
Eco130I CCWWGG 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 2 cut(s) 65, 331
FaiI YATR 3 cut(s) 54, 63, 329
FatI CATG 2 cut(s) 61, 327
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 181, 286
HapII CCGG 3 cut(s) 84, 234, 348
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 3 cut(s) 81, 104, 341
Hin1II CATG 2 cut(s) 65, 331
HinfI GANTC 4 cut(s) 96, 268, 279, 324
HpaII CCGG 3 cut(s) 84, 234, 348
HphI GGTGA 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 21, 95
Hpy188III TCNNGA 1 cut(s) 100
Hpy99I CGWCG 6 cut(s) 83, 106, 109, 112, 343, 346
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 2 cut(s) 104, 341
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 183, 355
HpySE526I ACGT 2 cut(s) 104, 341
Hsp92I GRCGYC 3 cut(s) 81, 104, 341
Hsp92II CATG 2 cut(s) 65, 331
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 4 cut(s) 6, 137, 141, 301
LmnI GCTCC 2 cut(s) 192, 236
LpnPI CCDG 7 cut(s) 97, 138, 247, 268, 278, 328, 361
MaeII ACGT 2 cut(s) 104, 341
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 8, 139, 143, 303
MbiI CCGCTC 1 cut(s) 152
MboI GATC 4 cut(s) 6, 137, 141, 301
MboII GAAGA 2 cut(s) 6, 173
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 3 cut(s) 31, 273, 296
MlyI GAGTC 3 cut(s) 90, 277, 333
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 7 cut(s) 105, 108, 170, 192, 297, 311, 314
MseI TTAA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 84, 234, 348
MvnI CGCG 2 cut(s) 41, 101
NcoI CCATGG 1 cut(s) 61
NdeII GATC 4 cut(s) 6, 137, 141, 301
NlaIII CATG 2 cut(s) 65, 331
NlaIV GGNNCC 2 cut(s) 232, 352
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 279
PflFI GACNNNGTC 2 cut(s) 106, 343
PleI GAGTC 3 cut(s) 90, 276, 332
PpsI GAGTC 3 cut(s) 90, 276, 332
PshAI GACNNNNGTC 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 232, 352
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 2 cut(s) 106, 343
RruI TCGCGA 1 cut(s) 101
SacII CCGCGG 1 cut(s) 42
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 4 cut(s) 6, 137, 141, 301
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 3 cut(s) 90, 277, 333
SduI GDGCHC 1 cut(s) 233
SetI ASST 6 cut(s) 107, 119, 127, 189, 344, 364
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
Sse9I AATT 3 cut(s) 31, 273, 296
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 3 cut(s) 39, 41, 150
StuI AGGCCT 1 cut(s) 286
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 2 cut(s) 107, 344
TaqI TCGA 8 cut(s) 78, 110, 131, 140, 154, 271, 277, 300
TaqII GACCGA 1 cut(s) 275
TasI AATT 3 cut(s) 31, 273, 296
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 78, 261
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 78, 261
Tth111I GACNNNGTC 2 cut(s) 106, 343
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 273
ZraI GACGTC 2 cut(s) 105, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.