Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001371.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

77394 .. 77699

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001371.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgaataatgtgctagtcaatgaatctgctcaccaggaatcagttcgggacttaagcttctattggactaatttgaagttttgttcatgttcatatgatactactgttaaaattggggattttgaacagtgccaacaagagcagacattgactggccatggttggaatgtgaagagtgttgactggctcttatttcccctgctcatcttctacttgctattcaatctctcctgtgcagctgaagctgaagataaaaaaaatgtcaccaacattggagcaatcattgatgttactattggtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

101

Amino Acids

11.46

Weight (kDa)

4.57

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	261, 267
AfaI	GTAC	1 cut(s)	301
AflII	CTTAAG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	76, 125, 223
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	57, 239, 245
AluI	AGCT	3 cut(s)	57, 239, 245
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	23, 256
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	52
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	157, 188
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	157, 188
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	157
BspANI	GGCC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	157, 188
BssECI	CCNNGG	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	106, 129
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	2 cut(s)	87, 158
CviJI	RGCY	5 cut(s)	57, 156, 187, 239, 245
CviKI_1	RGCY	5 cut(s)	57, 156, 187, 239, 245
CviQI	GTAC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	261, 267
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	90, 161
FaiI	YATR	4 cut(s)	88, 94, 96, 159
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	86, 157
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	90, 161
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	2 cut(s)	23, 38
HphI	GGTGA	2 cut(s)	23, 256
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	106, 129
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	90, 161
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	6 cut(s)	20, 47, 138, 169, 212, 244
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	262, 289
MboII	GAAGA	3 cut(s)	184, 199, 260
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	2 cut(s)	70, 111
MluNI	TGGCCA	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	156
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	2 cut(s)	53, 108
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	94
NlaIII	CATG	2 cut(s)	90, 161
NmuCI	GTSAC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	23, 38
PkrI	GCNGC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	53, 108
SatI	GCNGC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	3 cut(s)	59, 241, 247
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	70, 111
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	106, 129
TasI	AATT	2 cut(s)	70, 111
TfiI	GAWTC	2 cut(s)	23, 38
Tru1I	TTAA	2 cut(s)	53, 108
Tru9I	TTAA	2 cut(s)	53, 108
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	17, 36, 75, 81
TspRI	CASTG	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.