Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

26163035 .. 26163484

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG132500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGGAACTTGAATCTTTCCGCGGCCATGGGAACCAAGTGACTGCTCTAGCTTGGCATCCTCTTAGTGAAGACTATTTTGTCAGTGGGAGTAGTGATGGATCCATTCTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAATTCCTAATGCACACAGTAACAGTTACAATAATAGTGTCTGGGATCTTCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGTAGCAATGATCGCACCACAAAGTTTTGGTGTAGGACAGGAGATAAATCTACAATCAGTCAGAATCAAAGTATTGGTAATCAAAATTCTGCTTTTGCTTGTCACATGAATACTAATTTTCCTTTTCCATTTCATGGACCACCAACTATTGCGACTCAAGACGAAGGAACCATTGTTTCAGGTGTTGGAACGATTATACCAGGTGTTGGAATTGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

149

Amino Acids

16.26

Weight (kDa)

5.75

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	2 - 101	5.8e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	4 - 86	5.6e-08	WDR5 beta-propeller domain
WD40_Prp19	PF24814	4 - 94	3.7e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	5 - 99	1.5e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	6 - 87	4.7e-08	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	6 - 96	9.1e-07	CAF1B/HIR1 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccB7I	CCANNNNNTGG	2 cut(s)	362, 434
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	22, 24, 443
AclWI	GGATC	3 cut(s)	96, 109, 198
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	147, 313
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	362, 434
AgsI	TTSAA	2 cut(s)	14, 146
AjnI	CCWGG	2 cut(s)	138, 427
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	3 cut(s)	96, 109, 198
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	147, 313
AspS9I	GGNCC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	140, 429
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	140, 429
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	3 cut(s)	35, 103, 397
BmrFI	CCNGG	2 cut(s)	140, 429
BmsI	GCATC	2 cut(s)	67, 211
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	22, 28, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 434
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	140, 429
BseDI	CCNNGG	3 cut(s)	22, 28, 138
BseGI	GGATG	2 cut(s)	58, 202
BseLI	CCNNNNNNNGG	2 cut(s)	362, 434
BseMI	GCAATG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	362, 434
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	101, 190, 238
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	22, 24, 443
BspANI	GGCC	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	35, 103, 397
BspPI	GGATC	3 cut(s)	96, 109, 198
BsrDI	GCAATG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	22, 28, 138
BssMI	GATC	3 cut(s)	101, 190, 238
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	140, 429
Bst4CI	ACNGT	2 cut(s)	164, 170
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	2 cut(s)	22, 28
BstF5I	GGATG	2 cut(s)	58, 202
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	104, 193, 241
BstMBI	GATC	3 cut(s)	101, 190, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 240
BstNI	CCWGG	2 cut(s)	140, 429
BstSCI	CCNGG	2 cut(s)	138, 427
BstUI	CGCG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	101, 190
BstYI	RGATCY	2 cut(s)	101, 190
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	2 cut(s)	22, 28
BtsCI	GGATG	2 cut(s)	58, 202
BtsIMutI	CAGTG	2 cut(s)	91, 203
Cfr13I	GGNCC	1 cut(s)	365
Cfr42I	CCGCGG	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	427
CviAII	CATG	4 cut(s)	29, 128, 334, 362
CviJI	RGCY	3 cut(s)	27, 53, 118
CviKI_1	RGCY	3 cut(s)	27, 53, 118
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	103, 192, 240
DpnII	GATC	3 cut(s)	101, 190, 238
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	138, 427
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	32, 131, 337, 365
FaiI	YATR	7 cut(s)	30, 129, 216, 218, 335, 363, 425
FatI	CATG	4 cut(s)	28, 127, 333, 361
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	45, 189
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	32, 131, 337, 365
HinfI	GANTC	3 cut(s)	14, 292, 382
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	2 cut(s)	164, 170
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 240
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	32, 131, 337, 365
KspI	CCGCGG	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	101, 190, 238
LpnPI	CCDG	7 cut(s)	125, 152, 172, 252, 393, 414, 441
LweI	GCATC	2 cut(s)	67, 211
MabI	ACCWGGT	1 cut(s)	427
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	4 cut(s)	40, 164, 170, 329
MalI	GATC	3 cut(s)	103, 192, 240
MboI	GATC	3 cut(s)	101, 190, 238
MboII	GAAGA	2 cut(s)	83, 185
MflI	RGATCY	2 cut(s)	101, 190
MluCI	AATT	4 cut(s)	147, 313, 343, 438
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	394, 415
MnlI	CCTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	140, 429
MvaI	CCWGG	2 cut(s)	140, 429
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	124, 240
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	3 cut(s)	101, 190, 238
NlaIII	CATG	4 cut(s)	32, 131, 337, 365
NlaIV	GGNNCC	3 cut(s)	35, 103, 397
NmuCI	GTSAC	2 cut(s)	40, 329
PfeI	GAWTC	2 cut(s)	14, 292
PflMI	CCANNNNNTGG	2 cut(s)	362, 434
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	138, 427
PspGI	CCWGG	2 cut(s)	138, 427
PspN4I	GGNNCC	3 cut(s)	35, 103, 397
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	101, 190
SacII	CCGCGG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	3 cut(s)	101, 190, 238
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	140, 429
SetI	ASST	4 cut(s)	55, 144, 412, 433
SexAI	ACCWGGT	1 cut(s)	427
SfaNI	GCATC	2 cut(s)	67, 211
Sfr303I	CCGCGG	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	147, 313, 343, 438
SsiI	CCGC	3 cut(s)	22, 24, 443
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	138, 427
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	164, 170
TasI	AATT	4 cut(s)	147, 313, 343, 438
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	14, 292
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	2 cut(s)	91, 203
TseFI	GTSAC	2 cut(s)	40, 329
Tsp45I	GTSAC	2 cut(s)	40, 329
TspDTI	ATGAA	4 cut(s)	17, 144, 350, 350
TspRI	CASTG	2 cut(s)	91, 203
Van91I	CCANNNNNTGG	2 cut(s)	362, 434
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	147, 313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.