Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006601.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

21810 .. 24697

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006601.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggccccagaccactcctacgcccagaccaccacagttgattacaccattaacaacccatttgctgcccagtttgtgcgctcttgcgcaaattacagagcccgtgcttcttcgatcaatcgagttttatggacaccttctgggaggcgtcttatcacaggctctcaaaacggggagttcactctctggaatggtgagtcattcaaacatgaattgaggattcagggtcatgatcacgcaatcaggtccatggcgtggagttttgatgatcaagattggatctctggtgatgatgggggcacaatcaggtattggaagagtaacatgattaatgtgctagtcaatgaatctgctcaccatgaatcggttcgggacctgagcttctgtcggactaatttgaagttttgttcatgttccgatgatactacggttaaaatctgggattttgaacggtgccaacaggagaagacattgaccggccatggttggaatgtgacgagtgttgactggcaccccacaaactctctgatagcttcgggtgggtgggacagtgttgtcaaactgtgggatgctaggtcagggagagaactctgttctttttatgatcacaaaaattgggtgcattctgtcaagtggaaccgaaatggtaactggctgctgactgcttccaaggatcaagtcattaagctttacgacttgagggctatgaaggaacttagatctttccgcggccatcagaacaaagtgactgctctagcttggcatcctcttaccgaagattattttgtcagtgggagtagtgatggatccattttccattggcttgttgggcatcatactccccagggtactatttgccctaagagcgtggagagtttctgtgacaactgtaatcaaggtgtcatttggcaagtggaacttgggctattccatgtccttgaattaatactgatggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

319

Amino Acids

36.59

Weight (kDa)

6.59

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
Acc16I	TGCGCA	1 cut(s)	88
AccB1I	GGYRCC	2 cut(s)	453, 510
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccII	CGCG	1 cut(s)	729
AciI	CCGC	2 cut(s)	727, 729
AclWI	GGATC	4 cut(s)	287, 681, 801, 814
AcoI	YGGCCR	2 cut(s)	478, 730
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	1 cut(s)	850
AfiI	CCNNNNNNNGG	2 cut(s)	255, 364
AgsI	TTSAA	4 cut(s)	205, 400, 449, 941
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	4 cut(s)	381, 533, 688, 758
AluI	AGCT	4 cut(s)	381, 533, 688, 758
AlwI	GGATC	4 cut(s)	287, 681, 801, 814
AoxI	GGCC	3 cut(s)	3, 478, 730
ApeKI	GCWGC	2 cut(s)	65, 655
AseI	ATTAAT	2 cut(s)	330, 944
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	81, 89
AspS9I	GGNCC	3 cut(s)	4, 246, 373
AsuHPI	GGTGA	3 cut(s)	206, 299, 347
AvaII	GGWCC	2 cut(s)	246, 373
BaeGI	GKGCMC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	1 cut(s)	806
BanI	GGYRCC	2 cut(s)	453, 510
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	52, 642
BccI	CCATC	4 cut(s)	287, 741, 797, 946
BciT130I	CCWGG	1 cut(s)	845
BclI	TGATCA	3 cut(s)	232, 268, 604
BfaI	CTAG	4 cut(s)	338, 573, 755, 958
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	3 cut(s)	66, 656, 730
BlsI	GCNGC	3 cut(s)	67, 657, 731
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	2 cut(s)	246, 373
BmgT120I	GGNCC	3 cut(s)	4, 246, 373
BmiI	GGNNCC	6 cut(s)	6, 374, 455, 512, 638, 808
BmrFI	CCNGG	1 cut(s)	845
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	559, 772, 841
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	6 cut(s)	249, 481, 669, 727, 843, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 364
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	70, 512, 656
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	6 cut(s)	249, 481, 669, 727, 843, 844
BseGI	GGATG	2 cut(s)	574, 763
BseLI	CCNNNNNNNGG	2 cut(s)	255, 364
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	3 cut(s)	70, 512, 656
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	52, 642
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	5, 480, 732
BshNI	GGYRCC	2 cut(s)	453, 510
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	386, 560
BslI	CCNNNNNNNGG	2 cut(s)	255, 364
BsmFI	GGGAC	2 cut(s)	386, 560
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	5, 480, 732
Bsp1286I	GDGCHC	2 cut(s)	103, 302
Bsp143I	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
Bsp19I	CCATGG	2 cut(s)	249, 481
BspACI	CCGC	2 cut(s)	727, 729
BspANI	GGCC	3 cut(s)	5, 480, 732
BspCNI	CTCAG	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	6 cut(s)	6, 374, 455, 512, 638, 808
BspPI	GGATC	4 cut(s)	287, 681, 801, 814
BspT107I	GGYRCC	2 cut(s)	453, 510
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	70, 512, 656
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	6 cut(s)	249, 481, 669, 727, 843, 844
BssMI	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	3 cut(s)	249, 481, 669
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	6 cut(s)	37, 430, 453, 551, 564, 890
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	377, 716, 861
BstDSI	CCRYGG	3 cut(s)	249, 481, 727
BstF5I	GGATG	2 cut(s)	574, 763
BstFNI	CGCG	1 cut(s)	729
BstHHI	GCGC	2 cut(s)	81, 89
BstKTI	GATC	8 cut(s)	117, 235, 271, 282, 607, 676, 722, 809
BstMBI	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
BstMWI	GCNNNNNNNGC	2 cut(s)	829, 864
BstNI	CCWGG	1 cut(s)	845
BstSCI	CCNGG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	302
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	52, 642
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	3 cut(s)	279, 719, 806
BstYI	RGATCY	3 cut(s)	279, 719, 806
BsuRI	GGCC	3 cut(s)	5, 480, 732
BtgI	CCRYGG	3 cut(s)	249, 481, 727
BtsCI	GGATG	2 cut(s)	574, 763
BtsIMutI	CAGTG	2 cut(s)	556, 796
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	2 cut(s)	81, 89
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	4, 246, 373
Cfr42I	CCGCGG	1 cut(s)	730
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	849
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	8 cut(s)	209, 230, 250, 325, 359, 411, 482, 932
CviQI	GTAC	1 cut(s)	849
DdeI	CTNAG	3 cut(s)	377, 716, 861
DpnI	GATC	8 cut(s)	116, 234, 270, 281, 606, 675, 721, 808
DpnII	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	478, 730
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	249, 481, 669
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	246, 373
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	3 cut(s)	249, 481, 669
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	3 cut(s)	249, 481, 669
FaeI	CATG	8 cut(s)	212, 233, 253, 328, 362, 414, 485, 935
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FaqI	GGGAC	2 cut(s)	386, 560
FatI	CATG	8 cut(s)	208, 229, 249, 324, 358, 410, 481, 931
FbaI	TGATCA	3 cut(s)	232, 268, 604
Fnu4HI	GCNGC	3 cut(s)	66, 656, 730
FokI	GGATG	2 cut(s)	581, 750
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	66, 656, 730
FspBI	CTAG	4 cut(s)	338, 573, 755, 958
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	2 cut(s)	80, 88
GluI	GCNGC	3 cut(s)	66, 656, 730
HaeIII	GGCC	3 cut(s)	5, 480, 732
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	81, 89
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	8 cut(s)	212, 233, 253, 328, 362, 414, 485, 935
Hin6I	GCGC	2 cut(s)	79, 87
HinP1I	GCGC	2 cut(s)	79, 87
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	4 cut(s)	197, 220, 347, 362
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	206, 299, 347
Hpy166II	GTNNAC	2 cut(s)	180, 505
Hpy188I	TCNGA	4 cut(s)	390, 418, 528, 738
Hpy188III	TCNNGA	4 cut(s)	187, 230, 272, 371
Hpy8I	GTNNAC	2 cut(s)	180, 505
HpyAV	CCTTC	2 cut(s)	147, 703
HpyCH4III	ACNGT	6 cut(s)	37, 430, 453, 551, 564, 890
HpyCH4V	TGCA	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	829, 864
HpyF3I	CTNAG	3 cut(s)	377, 716, 861
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	8 cut(s)	212, 233, 253, 328, 362, 414, 485, 935
HspAI	GCGC	2 cut(s)	79, 87
Ksp22I	TGATCA	3 cut(s)	232, 268, 604
KspI	CCGCGG	1 cut(s)	730
Kzo9I	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
Lsp1109I	GCAGC	2 cut(s)	52, 642
LweI	GCATC	3 cut(s)	559, 772, 841
MaeI	CTAG	4 cut(s)	338, 573, 755, 958
MaeIII	GTNAC	5 cut(s)	320, 493, 647, 745, 881
MalI	GATC	8 cut(s)	116, 234, 270, 281, 606, 675, 721, 808
MboI	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
MboII	GAAGA	4 cut(s)	102, 328, 478, 788
MflI	RGATCY	3 cut(s)	279, 719, 806
MhlI	GDGCHC	2 cut(s)	103, 302
MluCI	AATT	5 cut(s)	91, 212, 394, 613, 941
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	368, 467
MnlI	CCTC	4 cut(s)	138, 210, 693, 777
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	5 cut(s)	51, 330, 432, 684, 944
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	829, 864
NcoI	CCATGG	2 cut(s)	249, 481
NdeII	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
NlaIII	CATG	8 cut(s)	212, 233, 253, 328, 362, 414, 485, 935
NlaIV	GGNNCC	6 cut(s)	6, 374, 455, 512, 638, 808
NmuCI	GTSAC	3 cut(s)	493, 745, 881
NsbI	TGCGCA	1 cut(s)	88
PagI	TCATGA	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	844
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	220, 347, 362
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	67, 657, 731
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	373
PshBI	ATTAAT	2 cut(s)	330, 944
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	6 cut(s)	6, 374, 455, 512, 638, 808
PspPI	GGNCC	3 cut(s)	4, 246, 373
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	3 cut(s)	279, 719, 806
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
SacII	CCGCGG	1 cut(s)	730
SaqAI	TTAA	5 cut(s)	51, 330, 432, 684, 944
SatI	GCNGC	3 cut(s)	66, 656, 730
Sau3AI	GATC	8 cut(s)	114, 232, 268, 279, 604, 673, 719, 806
Sau96I	GGNCC	3 cut(s)	4, 246, 373
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	2 cut(s)	103, 302
SfaNI	GCATC	3 cut(s)	559, 772, 841
Sfr303I	CCGCGG	1 cut(s)	730
SgrBI	CCGCGG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	246, 373
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	5 cut(s)	91, 212, 394, 613, 941
SsiI	CCGC	2 cut(s)	727, 729
SspMI	CTAG	4 cut(s)	338, 573, 755, 958
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	3 cut(s)	249, 481, 669
TaaI	ACNGT	6 cut(s)	37, 430, 453, 551, 564, 890
TaqI	TCGA	2 cut(s)	113, 121
TasI	AATT	5 cut(s)	91, 212, 394, 613, 941
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	3 cut(s)	220, 347, 362
Tru1I	TTAA	5 cut(s)	51, 330, 432, 684, 944
Tru9I	TTAA	5 cut(s)	51, 330, 432, 684, 944
TscAI	CASTG	2 cut(s)	556, 796
TseFI	GTSAC	3 cut(s)	493, 745, 881
TseI	GCWGC	2 cut(s)	65, 655
Tsp45I	GTSAC	3 cut(s)	493, 745, 881
TspDTI	ATGAA	5 cut(s)	225, 360, 375, 399, 722
TspRI	CASTG	2 cut(s)	556, 796
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	246, 373
VspI	ATTAAT	2 cut(s)	330, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	4 cut(s)	338, 573, 755, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.