Rorug03G0198100

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
17412795 .. 17413325
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0198100.1

Sequence Viewer

Length: 468 bp
ATGGATTCATGCACAAGCAATGCAAAACAATCTAGTAGTGGTTACTATGAGAGTGGTGAGTATAGGCCAAGAAACTCTAATCGTACAAATGATACAAATTTTGGTTCTGAAAGTAGGAAAGGGAAGCATCCACGCCCAAGGAAAACTGGTACAAAAAAAAGTAGATGCCCATTCTTATTAAGGGGATTGAATGTTGGCGATGGAAATGAATGGAAGCTAGAAGTTGCATGTGGAGTGCATAATCATAATGCTTCAAAATATCTCCAGGGACATAGTTATGTTGGGAGATTGACTCAAGAACAAAGTTTGCTCTTGGTGGAAATGTCTAAGAATTTCGTGCGACCTAAGCAAATTTTGACCACCATAAAGAATAAAGATGGGTTGAATGTGTCAACAATGAAGACATTATACAATGCTAGACAAAGGTACAAGACAAAAGAGTTGGCTGCAAGAACACAAATGCAGTAA

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

10.08

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 97, 331, 351
AfaI GTAC 3 cut(s) 85, 151, 428
AgsI TTSAA 3 cut(s) 190, 255, 385
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 3 cut(s) 97, 331, 351
AsuHPI GGTGA 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 194, 371
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 3 cut(s) 33, 218, 417
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 136, 155
BpiI GAAGAC 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 137, 265
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 137, 265
BseGI GGATG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 67
BspANI GGCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 137, 265
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 327, 345
BstF5I GGATG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 127
Csp6I GTAC 3 cut(s) 84, 150, 427
CviAII CATG 2 cut(s) 9, 228
CviJI RGCY 3 cut(s) 67, 217, 446
CviKI_1 RGCY 3 cut(s) 67, 217, 446
CviQI GTAC 3 cut(s) 84, 150, 427
DdeI CTNAG 2 cut(s) 327, 345
Eco130I CCWWGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 2 cut(s) 12, 231
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 8, 227
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 3 cut(s) 33, 218, 417
GluI GCNGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 2 cut(s) 12, 231
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 2 cut(s) 5, 292
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 393
HpyCH4V TGCA 6 cut(s) 12, 23, 227, 238, 449, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 327, 345
Hsp92II CATG 2 cut(s) 12, 231
LpnPI CCDG 3 cut(s) 132, 251, 278
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 2 cut(s) 136, 155
MaeI CTAG 3 cut(s) 33, 218, 417
MaeIII GTNAC 1 cut(s) 41
MboII GAAGA 1 cut(s) 412
MluCI AATT 3 cut(s) 97, 331, 351
MlyI GAGTC 1 cut(s) 286
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 12, 231
NspI RCATGY 1 cut(s) 231
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
RsaI GTAC 3 cut(s) 85, 151, 428
RsaNI GTAC 3 cut(s) 84, 150, 427
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 447
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 266
SetI ASST 3 cut(s) 219, 346, 428
SfaNI GCATC 2 cut(s) 136, 155
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 3 cut(s) 97, 331, 351
SspMI CTAG 3 cut(s) 33, 218, 417
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 137
TasI AATT 3 cut(s) 97, 331, 351
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 222, 413
XapI RAATTY 3 cut(s) 97, 331, 351
XceI RCATGY 1 cut(s) 231
XspI CTAG 3 cut(s) 33, 218, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.