Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

28263555 .. 28264703

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCCCCAGACCACTCCTACGCCCAGACCACCACGGTTGATTACACCATTAACAACCCATTTGCTGCCCAGTTTGTGCGCTCTTGCACAAATTACAGAGCCCGTGCTTCTTCGATCAATCGAGTTTTATGGACACCTTCTGGGAGGCGTCTTATTACAGGCTCTCAAAACGGGGAGTTCACTCTCTGGAATGGTGAGTCATTCAAATATGAATTGAGGATTCAGGCTCATGATCGCGCAATCAGGTCCATGGCGTGGAGTTTTGATGATCAAGATTGGATCTCTGGTGATGATGGGGGCACAATCAGGTATTGGAAGAGTAACATGATTAATGTGCTAGTCAATGAATCTGCTCACCATGAATCGGTTCGGGACCTGAGCTTCTGTCGGACTAATTTGAAGTTTTGTTCATGTTCCGATGATACTAGTGTTAAAATCTGGGATTTTGAACGGTGCCAACAGGAGAAGACATTGACCGGCCATGGTTGGAATGTGACGAGTGTCGACTGGCACCCCACAAACTCTCTAATAGCTTCGGGTGGGTGGGACAGTGTTGTCAAACTGTGGGATGCTAGGTCAGGGAGAGAACTCTGTTCTTTTTATGATCACAAAAATTGGGTGCATTCTGTCAAGTGGAACCGAAATGGCAACTGGCTGCTAACTGCTTCCAAGGATCAAGTCATTAAGCTTTACGACTTGAGGGCTATGAAGGAACTTAGATCTTTCCGCGGCCATCAGAACAAAGTGACTGCTCTAGCTTGGCATCCTCGTACTGAAGATTATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATCATACTCCCCAGGTTGAAATTCCTAATGCACACACTAACAGTTACAATAATAATAGTGTGTGGGATCTCCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGTAGCAATGATCGCACTACCAAGTTTTGGTGCAGAACAGGAGATAAATCTCAAATCACTCAGAATCAAAGTAATTCTGCTTTTGCTTGTCACATGAACGGTAATTTTCATTTTCCATATCATGGACCACCAACTATTGCTACTCGAGACGAAGGAACCCTTGGTTCAGGAGGTGTTGGAACCATTATACCTGGTGTTGGAATTGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

382

Amino Acids

43.41

Weight (kDa)

7.69

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	25 - 203	4.9e-27	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	26 - 242	7.6e-20	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	29 - 197	5.9e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	33 - 183	2.9e-21	WDR3 first beta-propeller domain
Beta-prop_IFT140_1st	PF23383	34 - 119	6.1e-09	IFT140 first beta-propeller
Beta-prop_WDR5	PF25175	35 - 128	3.2e-08	WDR5 beta-propeller domain
Beta-prop_EIPR1	PF23609	36 - 189	6.5e-07	EIPR1 beta-propeller
WD40_Prp19	PF24814	39 - 241	4e-30	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	42 - 197	8.1e-16	WDHD1 first WD40 domain
EIF3I	PF24805	72 - 157	6.9e-08	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	75 - 184	1e-07	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	80 - 248	7.5e-12	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	83 - 253	2.3e-14	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	101 - 233	2.9e-29	WDR5 beta-propeller domain
WDR55	PF24796	111 - 280	1.6e-18	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	115 - 274	2.7e-17	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	118 - 191	3.2e-09	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	131 - 276	7.8e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	135 - 221	6.2e-07	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	136 - 232	7.2e-06	SCAP Beta-propeller
WD40	PF00400	153 - 190	6.3e-11	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	155 - 237	7.4e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	156 - 322	4.3e-26	WDR3 first beta-propeller domain
EIF3I	PF24805	157 - 322	1.5e-10	EIF3I
Beta-prop_EML	PF23409	159 - 264	7.3e-08	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	167 - 326	4.7e-07	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	184 - 335	3.3e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	186 - 323	1.9e-08	WDR36/Utp21 first beta-propeller
WD40	PF00400	195 - 232	7.5e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	197 - 326	1.6e-11	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	200 - 285	4.4e-15	WDR5 beta-propeller domain
Beta-prop_DCAF4	PF23761	202 - 263	2.6e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	203 - 335	1.5e-23	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	206 - 318	4.9e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	207 - 310	2.4e-12	WDHD1 first WD40 domain
WD40	PF00400	237 - 274	2.3e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	238 - 343	3.9e-10	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	453, 510
AccB7I	CCANNNNNTGG	3 cut(s)	255, 963, 1058
AccI	GTMKAC	1 cut(s)	504
AccII	CGCG	2 cut(s)	237, 729
AciI	CCGC	3 cut(s)	727, 729, 1142
AclWI	GGATC	5 cut(s)	287, 681, 801, 814, 906
AcoI	YGGCCR	2 cut(s)	478, 730
AcsI	RAATTY	1 cut(s)	852
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	1 cut(s)	772
AfiI	CCNNNNNNNGG	5 cut(s)	255, 364, 963, 1058, 1133
AgsI	TTSAA	4 cut(s)	205, 400, 449, 851
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	843, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	1080, 1112
AluBI	AGCT	4 cut(s)	381, 533, 688, 758
AluI	AGCT	4 cut(s)	381, 533, 688, 758
Alw26I	GTCTC	1 cut(s)	1077
AlwI	GGATC	5 cut(s)	287, 681, 801, 814, 906
Ama87I	CYCGRG	1 cut(s)	1080
AoxI	GGCC	3 cut(s)	3, 478, 730
ApeKI	GCWGC	2 cut(s)	65, 655
ApoI	RAATTY	1 cut(s)	852
AseI	ATTAAT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	81, 239
AspS9I	GGNCC	4 cut(s)	4, 246, 373, 1061
AsuHPI	GGTGA	3 cut(s)	206, 299, 347
AvaI	CYCGRG	1 cut(s)	1080
AvaII	GGWCC	3 cut(s)	246, 373, 1061
BaeGI	GKGCMC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	1 cut(s)	806
BanI	GGYRCC	2 cut(s)	453, 510
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	52, 642
BccI	CCATC	3 cut(s)	287, 741, 797
BciT130I	CCWGG	2 cut(s)	845, 1128
BclI	TGATCA	2 cut(s)	268, 604
BcoDI	GTCTC	1 cut(s)	1077
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	4 cut(s)	338, 426, 573, 755
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	3 cut(s)	66, 656, 730
BlsI	GCNGC	3 cut(s)	67, 657, 731
Bme1390I	CCNGG	2 cut(s)	845, 1128
Bme18I	GGWCC	3 cut(s)	246, 373, 1061
BmeT110I	CYCGRG	1 cut(s)	1080
BmgT120I	GGNCC	4 cut(s)	4, 246, 373, 1061
BmiI	GGNNCC	8 cut(s)	6, 374, 455, 512, 638, 808, 1093, 1117
BmrFI	CCNGG	2 cut(s)	845, 1128
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	4 cut(s)	559, 772, 841, 919
BmuI	ACTGGG	1 cut(s)	64
BoxI	GACNNNNGTC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	887
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	7 cut(s)	33, 249, 481, 669, 727, 843, 1096
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 364, 963, 1058, 1133
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	4 cut(s)	70, 512, 656, 904
Bse3DI	GCAATG	1 cut(s)	949
BseBI	CCWGG	2 cut(s)	845, 1128
BseDI	CCNNGG	7 cut(s)	33, 249, 481, 669, 727, 843, 1096
BseGI	GGATG	3 cut(s)	574, 763, 910
BseLI	CCNNNNNNNGG	5 cut(s)	255, 364, 963, 1058, 1133
BseMI	GCAATG	1 cut(s)	949
BseMII	CTCAG	2 cut(s)	368, 1010
BseNI	ACTGG	4 cut(s)	70, 512, 656, 904
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	52, 642
BsgI	GTGCAG	1 cut(s)	988
Bsh1236I	CGCG	2 cut(s)	237, 729
BshFI	GGCC	3 cut(s)	5, 480, 732
BshNI	GGYRCC	2 cut(s)	453, 510
BsiHKCI	CYCGRG	1 cut(s)	1080
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	386, 560
BslI	CCNNNNNNNGG	5 cut(s)	255, 364, 963, 1058, 1133
BsmAI	GTCTC	1 cut(s)	1077
BsmBI	CGTCTC	1 cut(s)	1077
BsmFI	GGGAC	2 cut(s)	386, 560
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	5, 480, 732
BsoBI	CYCGRG	1 cut(s)	1080
Bsp1286I	GDGCHC	2 cut(s)	103, 302
Bsp19I	CCATGG	2 cut(s)	249, 481
BspACI	CCGC	3 cut(s)	727, 729, 1142
BspANI	GGCC	3 cut(s)	5, 480, 732
BspCNI	CTCAG	2 cut(s)	369, 1009
BspFNI	CGCG	2 cut(s)	237, 729
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	8 cut(s)	6, 374, 455, 512, 638, 808, 1093, 1117
BspPI	GGATC	5 cut(s)	287, 681, 801, 814, 906
BspT107I	GGYRCC	2 cut(s)	453, 510
BsrDI	GCAATG	1 cut(s)	949
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	4 cut(s)	70, 512, 656, 904
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	7 cut(s)	33, 249, 481, 669, 727, 843, 1096
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	4 cut(s)	249, 481, 669, 1096
Bst2UI	CCWGG	2 cut(s)	845, 1128
Bst4CI	ACNGT	6 cut(s)	37, 453, 551, 564, 875, 1037
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	377, 716, 996
BstDSI	CCRYGG	4 cut(s)	33, 249, 481, 727
BstF5I	GGATG	3 cut(s)	574, 763, 910
BstFNI	CGCG	2 cut(s)	237, 729
BstHHI	GCGC	2 cut(s)	81, 239
BstMAI	GTCTC	1 cut(s)	1077
BstMWI	GCNNNNNNNGC	2 cut(s)	829, 948
BstNI	CCWGG	2 cut(s)	845, 1128
BstPAI	GACNNNNGTC	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	843, 1126
BstSLI	GKGCMC	1 cut(s)	302
BstUI	CGCG	2 cut(s)	237, 729
BstV1I	GCAGC	2 cut(s)	52, 642
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	4 cut(s)	279, 719, 806, 898
BstYI	RGATCY	4 cut(s)	279, 719, 806, 898
BsuRI	GGCC	3 cut(s)	5, 480, 732
BtgI	CCRYGG	4 cut(s)	33, 249, 481, 727
BtsCI	GGATG	3 cut(s)	574, 763, 910
BtsIMutI	CAGTG	3 cut(s)	556, 796, 911
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	2 cut(s)	81, 239
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	4 cut(s)	4, 246, 373, 1061
Cfr42I	CCGCGG	1 cut(s)	730
CseI	GACGC	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	1126
Csp6I	GTAC	1 cut(s)	771
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	8 cut(s)	230, 250, 325, 359, 411, 482, 1030, 1058
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	3 cut(s)	377, 716, 996
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	478, 730
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	4 cut(s)	249, 481, 669, 1096
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	3 cut(s)	246, 373, 1061
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	1080
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	843, 1126
EcoT14I	CCWWGG	4 cut(s)	249, 481, 669, 1096
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	4 cut(s)	249, 481, 669, 1096
Esp3I	CGTCTC	1 cut(s)	1077
FaeI	CATG	8 cut(s)	233, 253, 328, 362, 414, 485, 1033, 1061
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FaqI	GGGAC	2 cut(s)	386, 560
FatI	CATG	8 cut(s)	229, 249, 324, 358, 410, 481, 1029, 1057
FauNDI	CATATG	1 cut(s)	924
FbaI	TGATCA	2 cut(s)	268, 604
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	66, 656, 730
FokI	GGATG	3 cut(s)	581, 750, 897
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	66, 656, 730
FspBI	CTAG	4 cut(s)	338, 426, 573, 755
GlaI	GCGC	2 cut(s)	80, 238
GluI	GCNGC	3 cut(s)	66, 656, 730
GsuI	CTGGAG	1 cut(s)	887
HaeIII	GGCC	3 cut(s)	5, 480, 732
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	81, 239
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	8 cut(s)	233, 253, 328, 362, 414, 485, 1033, 1061
Hin6I	GCGC	2 cut(s)	79, 237
HinP1I	GCGC	2 cut(s)	79, 237
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	197, 220, 347, 362, 1000
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	206, 299, 347
Hpy166II	GTNNAC	2 cut(s)	180, 505
Hpy188I	TCNGA	4 cut(s)	390, 418, 738, 999
Hpy188III	TCNNGA	6 cut(s)	187, 230, 272, 371, 1082, 1104
Hpy8I	GTNNAC	2 cut(s)	180, 505
HpyAV	CCTTC	3 cut(s)	147, 703, 1082
HpyCH4III	ACNGT	6 cut(s)	37, 453, 551, 564, 875, 1037
HpyCH4V	TGCA	4 cut(s)	87, 622, 863, 969
HpyF10VI	GCNNNNNNNGC	2 cut(s)	829, 948
HpyF3I	CTNAG	3 cut(s)	377, 716, 996
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	8 cut(s)	233, 253, 328, 362, 414, 485, 1033, 1061
HspAI	GCGC	2 cut(s)	79, 237
Ksp22I	TGATCA	2 cut(s)	268, 604
KspI	CCGCGG	1 cut(s)	730
Lsp1109I	GCAGC	2 cut(s)	52, 642
LweI	GCATC	4 cut(s)	559, 772, 841, 919
MabI	ACCWGGT	1 cut(s)	1126
MaeI	CTAG	4 cut(s)	338, 426, 573, 755
MaeIII	GTNAC	5 cut(s)	320, 493, 745, 875, 1025
MboII	GAAGA	4 cut(s)	102, 328, 478, 788
MflI	RGATCY	4 cut(s)	279, 719, 806, 898
MhlI	GDGCHC	2 cut(s)	103, 302
MluCI	AATT	8 cut(s)	91, 212, 394, 613, 852, 1009, 1039, 1137
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	4 cut(s)	368, 467, 1093, 1114
MnlI	CCTC	5 cut(s)	138, 210, 693, 777, 1100
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	5 cut(s)	51, 330, 432, 684, 1147
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	845, 1128
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	2 cut(s)	845, 1128
MvnI	CGCG	2 cut(s)	237, 729
MwoI	GCNNNNNNNGC	2 cut(s)	829, 948
NcoI	CCATGG	2 cut(s)	249, 481
NdeI	CATATG	1 cut(s)	924
NlaIII	CATG	8 cut(s)	233, 253, 328, 362, 414, 485, 1033, 1061
NlaIV	GGNNCC	8 cut(s)	6, 374, 455, 512, 638, 808, 1093, 1117
NmuCI	GTSAC	3 cut(s)	493, 745, 1025
PaeR7I	CTCGAG	1 cut(s)	1080
PagI	TCATGA	1 cut(s)	229
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	220, 347, 362, 1000
PflMI	CCANNNNNTGG	3 cut(s)	255, 963, 1058
PkrI	GCNGC	3 cut(s)	67, 657, 731
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	373
PshAI	GACNNNNGTC	1 cut(s)	500
PshBI	ATTAAT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	843, 1126
PspGI	CCWGG	2 cut(s)	843, 1126
PspN4I	GGNNCC	8 cut(s)	6, 374, 455, 512, 638, 808, 1093, 1117
PspPI	GGNCC	4 cut(s)	4, 246, 373, 1061
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	4 cut(s)	279, 719, 806, 898
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
SacII	CCGCGG	1 cut(s)	730
SalI	GTCGAC	1 cut(s)	503
SaqAI	TTAA	5 cut(s)	51, 330, 432, 684, 1147
SatI	GCNGC	3 cut(s)	66, 656, 730
Sau96I	GGNCC	4 cut(s)	4, 246, 373, 1061
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	845, 1128
SduI	GDGCHC	2 cut(s)	103, 302
SexAI	ACCWGGT	1 cut(s)	1126
SfaNI	GCATC	4 cut(s)	559, 772, 841, 919
Sfr274I	CTCGAG	1 cut(s)	1080
Sfr303I	CCGCGG	1 cut(s)	730
SgrBI	CCGCGG	1 cut(s)	730
SinI	GGWCC	3 cut(s)	246, 373, 1061
SlaI	CTCGAG	1 cut(s)	1080
SmlI	CTYRAG	2 cut(s)	697, 1080
SmoI	CTYRAG	2 cut(s)	697, 1080
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	8 cut(s)	91, 212, 394, 613, 852, 1009, 1039, 1137
SsiI	CCGC	3 cut(s)	727, 729, 1142
SspMI	CTAG	4 cut(s)	338, 426, 573, 755
StyD4I	CCNGG	2 cut(s)	843, 1126
StyI	CCWWGG	4 cut(s)	249, 481, 669, 1096
TaaI	ACNGT	6 cut(s)	37, 453, 551, 564, 875, 1037
TaqI	TCGA	4 cut(s)	113, 121, 504, 1081
TasI	AATT	8 cut(s)	91, 212, 394, 613, 852, 1009, 1039, 1137
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	4 cut(s)	220, 347, 362, 1000
Tru1I	TTAA	5 cut(s)	51, 330, 432, 684, 1147
Tru9I	TTAA	5 cut(s)	51, 330, 432, 684, 1147
TscAI	CASTG	3 cut(s)	556, 796, 911
TseFI	GTSAC	3 cut(s)	493, 745, 1025
TseI	GCWGC	2 cut(s)	65, 655
Tsp45I	GTSAC	3 cut(s)	493, 745, 1025
TspDTI	ATGAA	7 cut(s)	225, 360, 375, 399, 722, 1034, 1046
TspRI	CASTG	3 cut(s)	556, 796, 911
Van91I	CCANNNNNTGG	3 cut(s)	255, 963, 1058
VpaK11BI	GGWCC	3 cut(s)	246, 373, 1061
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	1080
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	4 cut(s)	338, 426, 573, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.