Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

4326397 .. 4331971

Gene Structure 5575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGTACGCCGGCGGCGATATGCACAGGGGTTCACAGATGCCACAACCACCGATGATGCGGCAGTCGTCAGCTTCTTCCACTAACATCAATCCCGACTACCACCACCCATCTGGCCCCTTCGACCCCAATGTAGACAGTTTTGGGGCGAAACGAATGAGAAAGCATACACAGAGAAGAGCTGTTGATTACACCAGCACCGTTGTTAGATATATTCAGGCTCGAACATGGCAGCGAGACTCAAGGGATAGGACCACTCTGCAACCAACCCCAGCTGCAGCAGTTGATATGCTTCCCACAGTTGCCTATTCGGATAATCCTTCAACAAGCTTTGCTGCAAAGTTTGTTCACGCATCTCTAAACAAGAACCGTTGTTCAATCAACCGTGTATTGTGGACACCTTCAGGAAGACGTCTTATCACGGGCTCCCAAAGTGGGGAGTTTACTCTTTGGAATGGGCAATCTTTTAATTTTGAAATGATTCTTCAGGCACATGATCAACCTATTAGGTCGATGGTATGGAGCCACAATGAAAATTATATGGTTTCTGGTGATGATGGAGGCACATTAAAGTATTGGCAGAACAATATGAACAATGTGAAAGCCAATAAAACTGCTCACAAGGAATCAATTCGCGATTTAAGTTTTTGTAAAACAGATTTGAAGTTCTGTTCGTGTTCTGATGATACGACTGTTAAAGTCTGGGATTTTACCAAGTGCGTAGATGAAAGCTCATTAACCGGCCATGGTTGGGATGTCAAGAGCGTTGACTGGCACCCCACAAAGTCCCTACTAGTTTCTGGTGGAAAAGACCAACTTGTCAAACTCTGGGATACTAGATCTGGGAGAGAGCTTTGCTCACTCCATGGTCACAAAAACATAGTACTTAGCGTGAAGTGGAACCAAAATGGCAATTGGCTTTTAACGGCCTCGAAAGATCAGATAATTAAGCTGTATGATATAAGGACTATGAAGGAGCTTCAATCCTTTCGTGGGCACACGAAAGATGTAACATCTTTGGCGTGGCATCCCTGCCATGAAGAATATTTTGTCAGTGGGAGCTCTGACGGCTCCATTTGTCATTGGATTGTGGGGCATGAAAACCCGCAGATTGAAATCCCAAATGCTCATGATAACAGTGTTTGGGATCTTGCATGGCATCCTATTGGATATCTTCTTTGCAGTGGTAGCAATGATCACACAACCAAGTTTTGGTGCAGAAACAGGCCTGCAGATAATCCCCGAGATGTTCTTATGCAGAACCAAGGCTATAATGAACAAGGTTTTGGTCGCCAACCTGATAATTTCCAACCATCTGAGGCATCGCCAATCCCTGGAGCATTTGTGCCTGGGTTGACACGGAACGAGGGGACTATCCCAGGAATAGGAATAGCAATGCCATTTGATGCATCCTCTCAAGGGGATCATAAACAGCCTCTTCCAGGTTCCATGGCACTGGGGGCTCCTCCTTTGCCACCTGGTCCCCACCCATCGCTTCTTGGAAGTGGCCAGCAGCAAGGGTATCAGCAACAACAACAACACCAAGGTCATCCCCAGCAAATGCTTCCAATGCCCAATATGCCTCACCATCAGCTACCACCATCATCTCATATGCCATTGCACCCTCATCATCTTCCCCGGCCTATGCAAATGCCTCCTCACGGTCACATGCCACCTCCCTCAATGCCTATGTCTCATCAGATGCCTGGATCAATGGGAATGCAAGGTGGCATGAATCCTCAGATGTCGCAAAGTCATTTTATGGGTGCTCCTTCAGGAGTATTTCAAGGACAACCAAACAGTGGCGGACCCCAAATGTATCCCCAAGGACGTGGTGGTTTCAACCGTCCACAGATGATTCCAGGCTACAACAACCCTTTCCAACAGCAGCAGCAGCCACCTTTACCTCCTGGCCCTCCACCAAACAACAATCAGCAACATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

647

Amino Acids

72.24

Weight (kDa)

8.57

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	85 - 372	5.7e-13	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	126 - 202	2.1e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	128 - 248	5.1e-16	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	128 - 301	1.8e-23	CDC20/Fizzy WD40 domain
Beta-prop_EIPR1	PF23609	129 - 287	1.4e-06	EIPR1 beta-propeller
Beta-prop_EML_2	PF23414	129 - 215	5.8e-06	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	129 - 204	1.9e-06	WDR55
Beta-prop_WDR5	PF25175	130 - 208	4.4e-08	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	130 - 227	2.6e-08	THOC3 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	131 - 218	1.6e-10	IFT140 first beta-propeller
WD40_Gbeta	PF25391	135 - 339	7.6e-18	G protein beta WD-40 repeat protein
Beta-prop_EML	PF23409	142 - 212	8.7e-07	Echinoderm microtubule-associated protein first beta-propeller
EIF3I	PF24805	172 - 249	4.6e-08	EIF3I
Beta-prop_TEP1_2nd	PF25047	180 - 350	3e-13	TEP-1 second beta-propeller
WD40_Prp19	PF24814	187 - 340	6.2e-23	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	194 - 298	1.3e-09	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	199 - 314	6.3e-23	WDR5 beta-propeller domain
WDR55	PF24796	208 - 372	1.2e-16	WDR55
Beta-prop_WDR36-Utp21_1st	PF25171	208 - 416	5.5e-12	WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	212 - 357	6.9e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	217 - 303	1.1e-16	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	228 - 393	8.4e-19	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	254 - 372	1.7e-26	WDR3 first beta-propeller domain
WD40	PF00400	254 - 288	5.3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	255 - 376	2e-15	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	255 - 337	2.5e-10	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	256 - 414	2.7e-12	EIF3I
Beta-prop_EML	PF23409	257 - 362	1.2e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin	PF25460	262 - 366	2.8e-06	Aladin seven-bladed propeller
Beta-prop_WDR19_1st	PF23389	266 - 411	1.9e-07	WDR19 first beta-propeller
Beta-prop_EML	PF23409	286 - 418	1e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	293 - 330	1.7e-08	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	294 - 418	1.3e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	298 - 416	8.2e-22	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	301 - 417	2.5e-23	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	303 - 369	8.3e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	305 - 382	4.2e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	305 - 415	2e-17	Prp19 WD40 domain
WD40_Gbeta	PF25391	316 - 414	2e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd	PF23393	317 - 408	2.8e-06	WDR90/POC16, second beta-propeller
WD40	PF00400	335 - 372	1.1e-07	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	338 - 414	1.4e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	338 - 415	3.5e-09	WDR3 first beta-propeller domain
WD40	PF00400	385 - 415	3.7e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	815
AatII	GACGTC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	771
AccB7I	CCANNNNNTGG	3 cut(s)	1209, 1331, 1799
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	12, 58, 1103, 1803
AclWI	GGATC	3 cut(s)	1152, 1428, 1714
AcoI	YGGCCR	2 cut(s)	739, 1504
AcuI	CTGAAG	3 cut(s)	384, 467, 1755
AcyI	GRCGYC	1 cut(s)	409
AfaI	GTAC	2 cut(s)	5, 882
AgsI	TTSAA	8 cut(s)	321, 375, 473, 661, 980, 1112, 1784, 1840
AhlI	ACTAGT	1 cut(s)	790
AjiI	CACGTC	1 cut(s)	1829
AjnI	CCWGG	8 cut(s)	1330, 1345, 1375, 1438, 1474, 1702, 1858, 1906
AjuI	GAANNNNNNNTTGG	2 cut(s)	1266, 1298
Alw21I	GWGCWC	2 cut(s)	1061, 1768
Alw26I	GTCTC	2 cut(s)	228, 1695
AlwI	GGATC	3 cut(s)	1152, 1428, 1714
Ama87I	CYCGRG	1 cut(s)	1239
AoxI	GGCC	7 cut(s)	112, 739, 924, 1223, 1504, 1637, 1909
ApeKI	GCWGC	8 cut(s)	229, 272, 275, 332, 1510, 1885, 1888, 1891
Asp700I	GAANNNNTTC	2 cut(s)	477, 627
AspS9I	GGNCC	5 cut(s)	113, 249, 1478, 1805, 1910
AsuC2I	CCSGG	1 cut(s)	1636
AsuHPI	GGTGA	2 cut(s)	560, 1574
AvaI	CYCGRG	1 cut(s)	1239
AvaII	GGWCC	3 cut(s)	249, 1478, 1805
BaeGI	GKGCMC	1 cut(s)	996
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BalI	TGGCCA	1 cut(s)	1506
BanI	GGYRCC	1 cut(s)	771
BanII	GRGCYC	3 cut(s)	425, 1061, 1462
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	1061, 1768
BbvI	GCAGC	8 cut(s)	241, 259, 287, 319, 1522, 1897, 1900, 1903
BccI	CCATC	7 cut(s)	115, 505, 548, 1318, 1495, 1593, 1606
BceAI	ACGGC	2 cut(s)	939, 1081
BciT130I	CCWGG	8 cut(s)	1332, 1347, 1377, 1440, 1476, 1704, 1860, 1908
BciVI	GTATCC	2 cut(s)	823, 1827
BclI	TGATCA	2 cut(s)	493, 1192
BcnI	CCSGG	1 cut(s)	1636
BcoDI	GTCTC	2 cut(s)	228, 1695
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	2 cut(s)	791, 834
BfmI	CTRYAG	2 cut(s)	273, 1227
BfuI	GTATCC	2 cut(s)	823, 1827
BglII	AGATCT	1 cut(s)	836
BmcAI	AGTACT	1 cut(s)	882
Bme1390I	CCNGG	9 cut(s)	1332, 1347, 1377, 1440, 1476, 1636, 1704, 1860, 1908
Bme18I	GGWCC	3 cut(s)	249, 1478, 1805
BmeT110I	CYCGRG	1 cut(s)	1239
BmgBI	CACGTC	1 cut(s)	1829
BmgT120I	GGNCC	5 cut(s)	113, 249, 1478, 1805, 1910
BmrFI	CCNGG	9 cut(s)	1332, 1347, 1377, 1440, 1476, 1636, 1704, 1860, 1908
BmrI	ACTGGG	1 cut(s)	1463
BmsI	GCATC	9 cut(s)	27, 45, 359, 1033, 1165, 1328, 1393, 1415, 1689
BmuI	ACTGGG	1 cut(s)	1463
BpiI	GAAGAC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	839, 871
BpmI	CTGGAG	1 cut(s)	1353
BpuEI	CTTGAG	2 cut(s)	223, 1398
BpuMI	CCSGG	1 cut(s)	1636
BsaBI	GATNNNNATC	1 cut(s)	1112
BsaHI	GRCGYC	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	1326, 1356
Bse118I	RCCGGY	2 cut(s)	8, 737
Bse1I	ACTGG	2 cut(s)	773, 1458
Bse3DI	GCAATG	3 cut(s)	1195, 1398, 1613
Bse8I	GATNNNNATC	1 cut(s)	1112
BseBI	CCWGG	8 cut(s)	1332, 1347, 1377, 1440, 1476, 1704, 1860, 1908
BseGI	GGATG	5 cut(s)	757, 1024, 1156, 1406, 1546
BseJI	GATNNNNATC	1 cut(s)	1112
BseMI	GCAATG	3 cut(s)	1195, 1398, 1613
BseMII	CTCAG	2 cut(s)	1305, 1751
BseNI	ACTGG	2 cut(s)	773, 1458
BseRI	GAGGAG	2 cut(s)	1452, 1644
BseSI	GKGCMC	1 cut(s)	996
BseXI	GCAGC	8 cut(s)	241, 259, 287, 319, 1522, 1897, 1900, 1903
BseYI	CCCAGC	2 cut(s)	268, 1551
BsgI	GTGCAG	1 cut(s)	1234
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	7 cut(s)	114, 741, 926, 1225, 1506, 1639, 1911
BshNI	GGYRCC	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	1061, 1768
BsiHKCI	CYCGRG	1 cut(s)	1239
BsiSI	CCGG	3 cut(s)	9, 738, 1636
BslFI	GGGAC	3 cut(s)	769, 1381, 1464
BsmAI	GTCTC	2 cut(s)	228, 1695
BsmFI	GGGAC	3 cut(s)	769, 1381, 1464
BsmI	GAATGC	1 cut(s)	1722
BsnI	GGCC	7 cut(s)	114, 741, 926, 1225, 1506, 1639, 1911
BsoBI	CYCGRG	1 cut(s)	1239
Bsp1286I	GDGCHC	5 cut(s)	425, 996, 1061, 1462, 1768
Bsp143I	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
Bsp19I	CCATGG	3 cut(s)	742, 862, 1446
Bsp68I	TCGCGA	1 cut(s)	633
BspACI	CCGC	4 cut(s)	12, 58, 1103, 1803
BspANI	GGCC	7 cut(s)	114, 741, 926, 1225, 1506, 1639, 1911
BspCNI	CTCAG	2 cut(s)	1306, 1750
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	1126
BspMAI	CTGCAG	2 cut(s)	277, 1231
BspPI	GGATC	3 cut(s)	1152, 1428, 1714
BspQI	GCTCTTC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	771
BsrDI	GCAATG	3 cut(s)	1195, 1398, 1613
BsrFI	RCCGGY	2 cut(s)	8, 737
BsrI	ACTGG	2 cut(s)	773, 1458
BssAI	RCCGGY	2 cut(s)	8, 737
BssMI	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
BssNI	GRCGYC	1 cut(s)	409
BssT1I	CCWWGG	6 cut(s)	742, 862, 1261, 1446, 1540, 1822
Bst2UI	CCWGG	8 cut(s)	1332, 1347, 1377, 1440, 1476, 1704, 1860, 1908
Bst6I	CTCTTC	2 cut(s)	169, 1440
BstACI	GRCGYC	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	10, 1227, 1508
BstDEI	CTNAG	3 cut(s)	884, 1314, 1737
BstDSI	CCRYGG	3 cut(s)	742, 862, 1446
BstENI	CCTNNNNNAGG	1 cut(s)	1437
BstF5I	GGATG	5 cut(s)	757, 1024, 1156, 1406, 1546
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	7 cut(s)	496, 839, 937, 1147, 1195, 1423, 1709
BstMAI	GTCTC	2 cut(s)	228, 1695
BstMBI	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
BstMWI	GCNNNNNNNGC	6 cut(s)	1065, 1185, 1457, 1567, 1576, 1891
BstNI	CCWGG	8 cut(s)	1332, 1347, 1377, 1440, 1476, 1704, 1860, 1908
BstNSI	RCATGY	1 cut(s)	1669
BstSCI	CCNGG	9 cut(s)	1330, 1345, 1375, 1438, 1474, 1634, 1702, 1858, 1906
BstSFI	CTRYAG	2 cut(s)	273, 1227
BstSLI	GKGCMC	1 cut(s)	996
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	8 cut(s)	241, 259, 287, 319, 1522, 1897, 1900, 1903
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	836, 1144
BstXI	CCANNNNNNTGG	3 cut(s)	110, 1453, 1829
BstYI	RGATCY	2 cut(s)	836, 1144
BsuI	GTATCC	2 cut(s)	823, 1827
BsuRI	GGCC	7 cut(s)	114, 741, 926, 1225, 1506, 1639, 1911
BtgI	CCRYGG	3 cut(s)	742, 862, 1446
BtgZI	GCGATG	2 cut(s)	1305, 1473
BtrI	CACGTC	1 cut(s)	1829
BtsCI	GGATG	5 cut(s)	757, 1024, 1156, 1406, 1546
BtsI	GCAGTG	1 cut(s)	1186
BtsIMutI	CAGTG	5 cut(s)	1057, 1141, 1186, 1451, 1804
BtuMI	TCGCGA	1 cut(s)	633
Cac8I	GCNNGC	3 cut(s)	10, 1227, 1508
CciI	TCATGA	1 cut(s)	1126
Cfr10I	RCCGGY	2 cut(s)	8, 737
Cfr13I	GGNCC	5 cut(s)	113, 249, 1478, 1805, 1910
CsiI	ACCWGGT	1 cut(s)	1474
Csp6I	GTAC	2 cut(s)	4, 881
CviQI	GTAC	2 cut(s)	4, 881
DdeI	CTNAG	3 cut(s)	884, 1314, 1737
DpnI	GATC	7 cut(s)	495, 838, 936, 1146, 1194, 1422, 1708
DpnII	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
DrdI	GACNNNNNNGTC	1 cut(s)	815
DseDI	GACNNNNNNGTC	1 cut(s)	815
EaeI	YGGCCR	2 cut(s)	739, 1504
Eam1104I	CTCTTC	2 cut(s)	169, 1440
EarI	CTCTTC	2 cut(s)	169, 1440
EciI	GGCGGA	1 cut(s)	1818
Ecl136II	GAGCTC	1 cut(s)	1059
Eco130I	CCWWGG	6 cut(s)	742, 862, 1261, 1446, 1540, 1822
Eco147I	AGGCCT	1 cut(s)	1225
Eco24I	GRGCYC	3 cut(s)	425, 1061, 1462
Eco32I	GATATC	1 cut(s)	1169
Eco47I	GGWCC	3 cut(s)	249, 1478, 1805
Eco53kI	GAGCTC	1 cut(s)	1059
Eco57I	CTGAAG	3 cut(s)	384, 467, 1755
Eco88I	CYCGRG	1 cut(s)	1239
EcoICRI	GAGCTC	1 cut(s)	1059
EcoNI	CCTNNNNNAGG	1 cut(s)	1437
EcoRII	CCWGG	8 cut(s)	1330, 1345, 1375, 1438, 1474, 1702, 1858, 1906
EcoRV	GATATC	1 cut(s)	1169
EcoT14I	CCWWGG	6 cut(s)	742, 862, 1261, 1446, 1540, 1822
EcoT22I	ATGCAT	1 cut(s)	1408
EcoT38I	GRGCYC	3 cut(s)	425, 1061, 1462
ErhI	CCWWGG	6 cut(s)	742, 862, 1261, 1446, 1540, 1822
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	3 cut(s)	769, 1381, 1464
FauI	CCCGC	1 cut(s)	1110
FauNDI	CATATG	1 cut(s)	1608
FbaI	TGATCA	2 cut(s)	493, 1192
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	5 cut(s)	764, 1011, 1143, 1393, 1533
FriOI	GRGCYC	3 cut(s)	425, 1061, 1462
FspBI	CTAG	2 cut(s)	791, 834
GsaI	CCCAGC	2 cut(s)	272, 1555
GsuI	CTGGAG	1 cut(s)	1353
HaeIII	GGCC	7 cut(s)	114, 741, 926, 1225, 1506, 1639, 1911
HapII	CCGG	3 cut(s)	9, 738, 1636
Hin1I	GRCGYC	1 cut(s)	409
HincII	GTYRAC	2 cut(s)	766, 1353
HindII	GTYRAC	2 cut(s)	766, 1353
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	5 cut(s)	236, 478, 623, 1732, 1855
HpaII	CCGG	3 cut(s)	9, 738, 1636
HphI	GGTGA	2 cut(s)	560, 1574
Hpy166II	GTNNAC	8 cut(s)	32, 133, 346, 393, 441, 766, 1353, 1847
Hpy188I	TCNGA	7 cut(s)	310, 679, 939, 1063, 1315, 1698, 1740
Hpy188III	TCNNGA	6 cut(s)	92, 402, 632, 757, 1127, 1773
Hpy8I	GTNNAC	8 cut(s)	32, 133, 346, 393, 441, 766, 1353, 1847
HpyAV	CCTTC	5 cut(s)	127, 327, 408, 964, 1779
HpyCH4IV	ACGT	2 cut(s)	409, 1828
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1065, 1185, 1457, 1567, 1576, 1891
HpyF3I	CTNAG	3 cut(s)	884, 1314, 1737
HpySE526I	ACGT	2 cut(s)	409, 1828
Hsp92I	GRCGYC	1 cut(s)	409
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	493, 1192
Kzo9I	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	8 cut(s)	428, 519, 973, 1056, 1073, 1334, 1465, 1771
Lsp1109I	GCAGC	8 cut(s)	241, 259, 287, 319, 1522, 1897, 1900, 1903
LweI	GCATC	9 cut(s)	27, 45, 359, 1033, 1165, 1328, 1393, 1415, 1689
MabI	ACCWGGT	1 cut(s)	1474
MaeI	CTAG	2 cut(s)	791, 834
MaeII	ACGT	2 cut(s)	409, 1828
MaeIII	GTNAC	3 cut(s)	866, 1006, 1661
MalI	GATC	7 cut(s)	495, 838, 936, 1146, 1194, 1422, 1708
MboI	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
MboII	GAAGA	8 cut(s)	66, 186, 417, 473, 1049, 1163, 1427, 1622
MfeI	CAATTG	1 cut(s)	910
MflI	RGATCY	2 cut(s)	836, 1144
MhlI	GDGCHC	5 cut(s)	425, 996, 1061, 1462, 1768
MlsI	TGGCCA	1 cut(s)	1506
MluCI	AATT	6 cut(s)	466, 532, 627, 910, 942, 1300
MluNI	TGGCCA	1 cut(s)	1506
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	1330, 1903
Mox20I	TGGCCA	1 cut(s)	1506
Mph1103I	ATGCAT	1 cut(s)	1408
MreI	CGCCGGCG	1 cut(s)	8
MroNI	GCCGGC	1 cut(s)	8
MroXI	GAANNNNTTC	2 cut(s)	477, 627
MscI	TGGCCA	1 cut(s)	1506
MseI	TTAA	7 cut(s)	465, 566, 638, 693, 734, 920, 945
Msp20I	TGGCCA	1 cut(s)	1506
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	3 cut(s)	9, 738, 1636
MspR9I	CCNGG	9 cut(s)	1332, 1347, 1377, 1440, 1476, 1636, 1704, 1860, 1908
MunI	CAATTG	1 cut(s)	910
Mva1269I	GAATGC	1 cut(s)	1722
MvaI	CCWGG	8 cut(s)	1332, 1347, 1377, 1440, 1476, 1704, 1860, 1908
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	6 cut(s)	1065, 1185, 1457, 1567, 1576, 1891
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	1636
NcoI	CCATGG	3 cut(s)	742, 862, 1446
NdeI	CATATG	1 cut(s)	1608
NdeII	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
NgoMIV	GCCGGC	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	866, 1661
NruI	TCGCGA	1 cut(s)	633
NsiI	ATGCAT	1 cut(s)	1408
NspI	RCATGY	1 cut(s)	1669
PagI	TCATGA	1 cut(s)	1126
PceI	AGGCCT	1 cut(s)	1225
PciSI	GCTCTTC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	1722
PdiI	GCCGGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	477, 627
PfeI	GAWTC	4 cut(s)	478, 623, 1732, 1855
PflMI	CCANNNNNTGG	3 cut(s)	1209, 1331, 1799
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	1061
Psp6I	CCWGG	8 cut(s)	1330, 1345, 1375, 1438, 1474, 1702, 1858, 1906
PspFI	CCCAGC	2 cut(s)	268, 1551
PspGI	CCWGG	8 cut(s)	1330, 1345, 1375, 1438, 1474, 1702, 1858, 1906
PspPI	GGNCC	5 cut(s)	113, 249, 1478, 1805, 1910
PstI	CTGCAG	2 cut(s)	277, 1231
PsuI	RGATCY	2 cut(s)	836, 1144
PvuII	CAGCTG	1 cut(s)	272
RruI	TCGCGA	1 cut(s)	633
RsaI	GTAC	2 cut(s)	5, 882
RsaNI	GTAC	2 cut(s)	4, 881
SacI	GAGCTC	1 cut(s)	1061
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	7 cut(s)	465, 566, 638, 693, 734, 920, 945
Sau3AI	GATC	7 cut(s)	493, 836, 934, 1144, 1192, 1420, 1706
Sau96I	GGNCC	5 cut(s)	113, 249, 1478, 1805, 1910
ScaI	AGTACT	1 cut(s)	882
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	9 cut(s)	1332, 1347, 1377, 1440, 1476, 1636, 1704, 1860, 1908
SduI	GDGCHC	5 cut(s)	425, 996, 1061, 1462, 1768
SexAI	ACCWGGT	1 cut(s)	1474
SfaNI	GCATC	9 cut(s)	27, 45, 359, 1033, 1165, 1328, 1393, 1415, 1689
SfcI	CTRYAG	2 cut(s)	273, 1227
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	3 cut(s)	249, 1478, 1805
SmlI	CTYRAG	2 cut(s)	238, 1413
SmoI	CTYRAG	2 cut(s)	238, 1413
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	6 cut(s)	466, 532, 627, 910, 942, 1300
SseBI	AGGCCT	1 cut(s)	1225
SsiI	CCGC	4 cut(s)	12, 58, 1103, 1803
SspI	AATATT	1 cut(s)	1043
SspMI	CTAG	2 cut(s)	791, 834
SstI	GAGCTC	1 cut(s)	1061
StuI	AGGCCT	1 cut(s)	1225
StyD4I	CCNGG	9 cut(s)	1330, 1345, 1375, 1438, 1474, 1634, 1702, 1858, 1906
StyI	CCWWGG	6 cut(s)	742, 862, 1261, 1446, 1540, 1822
TaiI	ACGT	2 cut(s)	412, 1831
TaqI	TCGA	4 cut(s)	120, 220, 509, 929
TasI	AATT	6 cut(s)	466, 532, 627, 910, 942, 1300
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	2 cut(s)	15, 61
TfiI	GAWTC	4 cut(s)	478, 623, 1732, 1855
Tru1I	TTAA	7 cut(s)	465, 566, 638, 693, 734, 920, 945
Tru9I	TTAA	7 cut(s)	465, 566, 638, 693, 734, 920, 945
TscAI	CASTG	5 cut(s)	1057, 1141, 1186, 1458, 1804
TseFI	GTSAC	2 cut(s)	866, 1661
TseI	GCWGC	8 cut(s)	229, 272, 275, 332, 1510, 1885, 1888, 1891
Tsp45I	GTSAC	2 cut(s)	866, 1661
TspDTI	ATGAA	8 cut(s)	543, 602, 738, 983, 1050, 1110, 1287, 1745
TspGWI	ACGGA	1 cut(s)	1372
TspRI	CASTG	5 cut(s)	1057, 1141, 1186, 1458, 1804
Van91I	CCANNNNNTGG	3 cut(s)	1209, 1331, 1799
VpaK11BI	GGWCC	3 cut(s)	249, 1478, 1805
XagI	CCTNNNNNAGG	1 cut(s)	1437
XceI	RCATGY	1 cut(s)	1669
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 1829
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	2 cut(s)	477, 627
XspI	CTAG	2 cut(s)	791, 834
ZraI	GACGTC	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	882
Zsp2I	ATGCAT	1 cut(s)	1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.