Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

6647711 .. 6649051

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTTCCAGAGTATCATCACCACCCCTACGACCCTGCTGGTCCTCATGCTCCTCCTCATGTCGATGGCTTTGGTGCAATAAGAAACAGAATGCAGACCCAGAAAACGACAGTTGATTACACTACCTCTGTCGTGCGATACACACAGACTCGAAAGCGGCAGCGTGATGCAAGGGATACAACAGTGTTGCAACCTACACCAGCAGCATCAATCAATTCGTTGCCGCCGGTTGCGTATTCAGATAACCCATCTAGGAGCTTTGCTGCAAAGTTTGTGCATGCTTGTACAAATTACAGAGCCCGTGCTTCTCCGATTAATCGGGTTTTGTGGACACCTTCCGGGAGGCGTCTCATTACAGGGTCGCAAAATGGGGAGTTCACTCTTTGGGATGGTCAGTCATTTAACTATGAATTGAGTTTTCTGGCTCATGATCAAGCAGTCAGGTCTATGGCGTGGAGTTATGATGGTGAGAATTGGATTTCTGGTGATGATGGGGGATCAATAAAGTATTGGACGAGTAACATGAACAATGTGCTAGTCAATGAATCTGCTCACCGAGAATCGGTTCGGGACTTGAGCTTTTGTAGGACTAATTTGAAGTTCTGTTCATGTTCGGATGATACTTATGTGAAAATCTGGGATTATGAACGGTGCCAAGAAGTGCACAGATTGACTGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCTCTAATAGCTTCAGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGACAGGGAGAGAGCTTTGTTCATTTCATGATCACAAAAATTGGGTGCATTCTGTTAAGTGGAACCGAAATGGTAACTGTCTGCTGACTGCTTCTAAGGACCAAGTCATTAAGCTTTACGACATGAGGGCTATGAAGGAGCTTGAATCATTCCGCGGGCATCGGAATGAAGTGACTGCTCTAGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAGTTCCTAATGCACACAGTAACAATCACAATAACAGTGTGTGGGATCTCCAATGGCATCCTATTGGTCATATGCTTTGCAGTGGTAGCAATGATCGCACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGATAAATGTAACATCAGTCAGAATCAAAGTATTGGTGTTCAAAGTTCTGCTTTTGCTGGTCACATGACTAGTAATTTTCCATTTCCATTACATGAAGGACAACCAACAATTGCTACTCGAAACCAAGGAACCATTATTCCAGGTGTTGGATTTGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

446

Amino Acids

50.61

Weight (kDa)

8.46

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	89 - 216	4.7e-07	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	96 - 273	1.7e-29	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	96 - 265	4.3e-24	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	99 - 250	4.9e-24	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	99 - 308	1.6e-19	G protein beta WD-40 repeat protein
Beta-prop_IFT140_1st	PF23383	101 - 189	5.4e-08	IFT140 first beta-propeller
Beta-prop_WDR5	PF25175	103 - 192	4.2e-08	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	106 - 264	1.2e-15	WDHD1 first WD40 domain
Beta-prop_EIPR1	PF23609	106 - 255	2.6e-07	EIPR1 beta-propeller
WD40_Prp19	PF24814	112 - 307	6.5e-31	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	133 - 256	3.1e-15	WDR3 second beta-propeller domain
EIF3I	PF24805	140 - 222	1.5e-07	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	142 - 253	2.9e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	143 - 266	2.6e-07	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	167 - 300	2.4e-29	WDR5 beta-propeller domain
WDR55	PF24796	175 - 340	4.1e-18	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	180 - 340	4.8e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	197 - 340	1.1e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	201 - 289	1.7e-07	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	203 - 300	2e-06	SCAP Beta-propeller
WD40	PF00400	219 - 256	5e-09	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	219 - 387	2.2e-28	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	220 - 318	9.6e-12	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	223 - 342	1.3e-13	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	224 - 303	3.7e-10	CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	224 - 296	1.2e-06	IFT140 first beta-propeller
EIF3I	PF24805	225 - 386	3e-13	EIF3I
Beta-prop_EML	PF23409	225 - 330	2.7e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	231 - 387	2.9e-08	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	234 - 384	2.4e-07	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	246 - 388	2.5e-09	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	251 - 392	6.7e-23	CDC20/Fizzy WD40 domain
Beta-prop_EIPR1	PF23609	258 - 387	3.8e-07	EIPR1 beta-propeller
WD40	PF00400	261 - 298	8.1e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	267 - 388	3.6e-18	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	269 - 404	4.3e-23	THOC3 beta-propeller domain
Beta-prop_DCAF4	PF23761	269 - 329	2.3e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_Aladin	PF25460	271 - 383	6.4e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	273 - 399	8.2e-13	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	284 - 380	2.5e-06	WDR90/POC16, second beta-propeller
WD40	PF00400	303 - 340	5.9e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	307 - 387	2.3e-09	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	310 - 389	5.5e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
AccB1I	GGYRCC	2 cut(s)	651, 708
AccB7I	CCANNNNNTGG	1 cut(s)	1325
AccII	CGCG	1 cut(s)	927
AciI	CCGC	4 cut(s)	157, 224, 925, 927
AclWI	GGATC	4 cut(s)	505, 999, 1012, 1101
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	562, 1325
AgsI	TTSAA	4 cut(s)	598, 917, 1049, 1220
AhlI	ACTAGT	1 cut(s)	1247
AjnI	CCWGG	3 cut(s)	1041, 1174, 1318
AloI	GAACNNNNNNTCC	2 cut(s)	1300, 1332
AluBI	AGCT	7 cut(s)	258, 579, 731, 787, 886, 913, 956
AluI	AGCT	7 cut(s)	258, 579, 731, 787, 886, 913, 956
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	353, 726
Alw44I	GTGCAC	1 cut(s)	662
AlwI	GGATC	4 cut(s)	505, 999, 1012, 1101
AoxI	GGCC	2 cut(s)	676, 1172
ApaLI	GTGCAC	1 cut(s)	662
ApeKI	GCWGC	3 cut(s)	160, 203, 263
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	41, 871
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	11, 479, 497, 545
AvaII	GGWCC	2 cut(s)	41, 871
BaeGI	GKGCMC	1 cut(s)	666
BaeI	ACNNNNGTAYC	4 cut(s)	168, 201, 612, 645
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	1004
BanI	GGYRCC	2 cut(s)	651, 708
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	172, 215, 250
BccI	CCATC	6 cut(s)	59, 256, 383, 458, 485, 995
BciT130I	CCWGG	3 cut(s)	1043, 1176, 1320
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	2 cut(s)	430, 802
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	353, 726
BcuI	ACTAGT	1 cut(s)	1247
BfaI	CTAG	5 cut(s)	252, 536, 771, 953, 1248
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
BlsI	GCNGC	5 cut(s)	159, 162, 205, 225, 265
Bme1390I	CCNGG	4 cut(s)	340, 1043, 1176, 1320
Bme18I	GGWCC	2 cut(s)	41, 871
BmgT120I	GGNCC	2 cut(s)	41, 871
BmiI	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
BmrFI	CCNGG	4 cut(s)	340, 1043, 1176, 1320
BmsI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
BpuEI	CTTGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	4 cut(s)	679, 925, 1041, 1303
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 1325
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	679, 710
Bse3DI	GCAATG	1 cut(s)	1144
BseBI	CCWGG	3 cut(s)	1043, 1176, 1320
BseDI	CCNNGG	4 cut(s)	679, 925, 1041, 1303
BseGI	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	562, 1325
BseMI	GCAATG	1 cut(s)	1144
BseNI	ACTGG	2 cut(s)	679, 710
BseRI	GAGGAG	2 cut(s)	42, 45
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	3 cut(s)	172, 215, 250
BsgI	GTGCAG	1 cut(s)	1183
Bsh1236I	CGCG	1 cut(s)	927
BshFI	GGCC	2 cut(s)	678, 1174
BshNI	GGYRCC	2 cut(s)	651, 708
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	227, 339
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	2 cut(s)	562, 1325
BsmAI	GTCTC	2 cut(s)	353, 726
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	2 cut(s)	96, 820
BsnI	GGCC	2 cut(s)	678, 1174
Bsp1286I	GDGCHC	2 cut(s)	301, 666
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	4 cut(s)	157, 224, 925, 927
BspANI	GGCC	2 cut(s)	678, 1174
BspFNI	CGCG	1 cut(s)	927
BspHI	TCATGA	3 cut(s)	427, 799, 970
BspLI	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
BspPI	GGATC	4 cut(s)	505, 999, 1012, 1101
BspT107I	GGYRCC	2 cut(s)	651, 708
BsrDI	GCAATG	1 cut(s)	1144
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	679, 710
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	679, 925, 1041, 1303
BssMI	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	2 cut(s)	679, 1303
Bst2UI	CCWGG	3 cut(s)	1043, 1176, 1320
Bst4CI	ACNGT	8 cut(s)	112, 184, 651, 749, 762, 851, 1067, 1085
Bst6I	CTCTTC	1 cut(s)	689
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	279, 929
BstDEI	CTNAG	1 cut(s)	867
BstDSI	CCRYGG	2 cut(s)	679, 925
BstF5I	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BstFNI	CGCG	1 cut(s)	927
BstKTI	GATC	6 cut(s)	433, 500, 805, 1007, 1096, 1144
BstMAI	GTCTC	2 cut(s)	353, 726
BstMBI	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
BstNI	CCWGG	3 cut(s)	1043, 1176, 1320
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	4 cut(s)	338, 1041, 1174, 1318
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	1 cut(s)	927
BstV1I	GCAGC	3 cut(s)	172, 215, 250
BstX2I	RGATCY	2 cut(s)	1004, 1093
BstYI	RGATCY	2 cut(s)	1004, 1093
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	678, 1174
BtgI	CCRYGG	2 cut(s)	679, 925
BtsCI	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BtsI	GCAGTG	1 cut(s)	1135
BtsIMutI	CAGTG	5 cut(s)	189, 754, 994, 1090, 1135
Cac8I	GCNNGC	2 cut(s)	279, 929
CciI	TCATGA	3 cut(s)	427, 799, 970
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	41, 871
Cfr42I	CCGCGG	1 cut(s)	928
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	285
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	867
DpnI	GATC	6 cut(s)	432, 499, 804, 1006, 1095, 1143
DpnII	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	2 cut(s)	679, 1303
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	41, 871
Eco57I	CTGAAG	1 cut(s)	717
EcoRII	CCWGG	3 cut(s)	1041, 1174, 1318
EcoT14I	CCWWGG	2 cut(s)	679, 1303
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	2 cut(s)	679, 1303
Esp3I	CGTCTC	1 cut(s)	353
FalI	AAGNNNNNCTT	2 cut(s)	1213, 1245
FaqI	GGGAC	1 cut(s)	584
FauI	CCCGC	1 cut(s)	920
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	2 cut(s)	430, 802
Fnu4HI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
FokI	GGATG	5 cut(s)	401, 629, 779, 948, 1092
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
FspBI	CTAG	5 cut(s)	252, 536, 771, 953, 1248
GluI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
HaeIII	GGCC	2 cut(s)	678, 1174
HapII	CCGG	2 cut(s)	227, 339
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	5 cut(s)	148, 545, 560, 917, 1201
HpaII	CCGG	2 cut(s)	227, 339
HphI	GGTGA	4 cut(s)	11, 479, 497, 545
Hpy166II	GTNNAC	4 cut(s)	330, 378, 664, 703
Hpy188I	TCNGA	5 cut(s)	241, 312, 616, 936, 1200
Hpy188III	TCNNGA	5 cut(s)	8, 428, 569, 800, 971
Hpy8I	GTNNAC	4 cut(s)	330, 378, 664, 703
HpyAV	CCTTC	3 cut(s)	345, 901, 1268
HpyCH4III	ACNGT	8 cut(s)	112, 184, 651, 749, 762, 851, 1067, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
HpyF3I	CTNAG	1 cut(s)	867
Hsp92I	GRCGYC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	430, 802
KspI	CCGCGG	1 cut(s)	928
Kzo9I	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
LmnI	GCTCC	3 cut(s)	55, 255, 910
Lsp1109I	GCAGC	3 cut(s)	172, 215, 250
LweI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
MaeI	CTAG	5 cut(s)	252, 536, 771, 953, 1248
MaeIII	GTNAC	6 cut(s)	518, 845, 943, 1067, 1187, 1238
MalI	GATC	6 cut(s)	432, 499, 804, 1006, 1095, 1143
MboI	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
MboII	GAAGA	2 cut(s)	706, 986
MfeI	CAATTG	1 cut(s)	1287
MflI	RGATCY	2 cut(s)	1004, 1093
MhlI	GDGCHC	2 cut(s)	301, 666
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	9 cut(s)	214, 289, 410, 472, 592, 811, 1252, 1287, 1335
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	665, 1306
MnlI	CCTC	6 cut(s)	54, 63, 66, 136, 336, 891
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	5 cut(s)	315, 402, 828, 882, 1339
MslI	CAYNNNNRTG	2 cut(s)	63, 936
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	927
MspI	CCGG	2 cut(s)	227, 339
MspR9I	CCNGG	4 cut(s)	340, 1043, 1176, 1320
MunI	CAATTG	1 cut(s)	1287
Mva1269I	GAATGC	2 cut(s)	96, 820
MvaI	CCWGG	3 cut(s)	1043, 1176, 1320
MvnI	CGCG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	679
NdeI	CATATG	1 cut(s)	1119
NdeII	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
NlaIV	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
NmuCI	GTSAC	2 cut(s)	943, 1238
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	3 cut(s)	427, 799, 970
PctI	GAATGC	2 cut(s)	96, 820
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	545, 560, 917, 1201
PflFI	GACNNNGTC	1 cut(s)	875
PflMI	CCANNNNNTGG	1 cut(s)	1325
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	159, 162, 205, 225, 265
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	1041, 1174, 1318
PspGI	CCWGG	3 cut(s)	1041, 1174, 1318
PspN4I	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
PspPI	GGNCC	2 cut(s)	41, 871
PsuI	RGATCY	2 cut(s)	1004, 1093
PsyI	GACNNNGTC	1 cut(s)	875
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	63, 936
SacII	CCGCGG	1 cut(s)	928
SaqAI	TTAA	5 cut(s)	315, 402, 828, 882, 1339
SatI	GCNGC	5 cut(s)	158, 161, 204, 224, 264
Sau3AI	GATC	6 cut(s)	430, 497, 802, 1004, 1093, 1141
Sau96I	GGNCC	2 cut(s)	41, 871
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	4 cut(s)	340, 1043, 1176, 1320
SduI	GDGCHC	2 cut(s)	301, 666
SfaNI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
Sfr303I	CCGCGG	1 cut(s)	928
SgrBI	CCGCGG	1 cut(s)	928
SinI	GGWCC	2 cut(s)	41, 871
SmiMI	CAYNNNNRTG	2 cut(s)	63, 936
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
SpeI	ACTAGT	1 cut(s)	1247
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	9 cut(s)	214, 289, 410, 472, 592, 811, 1252, 1287, 1335
SsiI	CCGC	4 cut(s)	157, 224, 925, 927
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	5 cut(s)	252, 536, 771, 953, 1248
StyD4I	CCNGG	4 cut(s)	338, 1041, 1174, 1318
StyI	CCWWGG	2 cut(s)	679, 1303
TaaI	ACNGT	8 cut(s)	112, 184, 651, 749, 762, 851, 1067, 1085
TaqI	TCGA	3 cut(s)	63, 151, 1297
TasI	AATT	9 cut(s)	214, 289, 410, 472, 592, 811, 1252, 1287, 1335
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	2 cut(s)	160, 226
TfiI	GAWTC	4 cut(s)	545, 560, 917, 1201
Tru1I	TTAA	5 cut(s)	315, 402, 828, 882, 1339
Tru9I	TTAA	5 cut(s)	315, 402, 828, 882, 1339
TscAI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
TseFI	GTSAC	2 cut(s)	943, 1238
TseI	GCWGC	3 cut(s)	160, 203, 263
Tsp45I	GTSAC	2 cut(s)	943, 1238
TspRI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
Tth111I	GACNNNGTC	1 cut(s)	875
Van91I	CCANNNNNTGG	1 cut(s)	1325
VneI	GTGCAC	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	41, 871
VspI	ATTAAT	1 cut(s)	315
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	5 cut(s)	252, 536, 771, 953, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.