Rmu_sc0004540.1_g000008

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004540.1
OG0000356
Physical Location & Seq
Reverse (-)
38988 .. 39827
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004540.1_g000008.1.cds

Sequence Viewer

Length: 621 bp
atgattctctctcaatccatatctggtaagatcatcggccaccttcgccggagaaagtttcacggcgacatggaaaactattcttctcggacgacgacttattcaaccttggaggcgaagcagaagacccatggctctacactgttcgacatcgtccgatttggacaggacgatttgcggaacggcgatagggatgtatcgacgtcgctcccagcctcgtcgtcgaagctaagcctcgtctccaattggatctctggtgatgatggaggctcaatcaagtactggaagagtaacatgaataatgtgctagtcaatgaatctgctcaccaggaatcagttcgggacttaagcttctattggagtaatttgaagttttgttcatgtttagatgatactactgttaaaattggggattttgaacagtgccaacaagagcagacattgactggccatggttggaatgtgaagagtgttgattggctcttatttcctctgctcatcttctacttgctattcaatctctcctgtgcagctgaagctgaagatgaaaaaaatgtcaccaacattggagctgtacatacctccaataatatggagtatttactacatcaccaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
WD40

Protein Analysis

206

Amino Acids

23.31

Weight (kDa)

5.87

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 206
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 37, 448
AcuI CTGAAG 2 cut(s) 555, 561
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 2 cut(s) 281, 576
AflII CTTAAG 1 cut(s) 346
AgsI TTSAA 4 cut(s) 105, 370, 419, 517
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 5 cut(s) 229, 351, 533, 539, 572
AluI AGCT 5 cut(s) 229, 351, 533, 539, 572
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 37, 448
ApeKI GCWGC 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 336
AsuHPI GGTGA 4 cut(s) 269, 317, 550, 602
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 542
BccI CCATC 1 cut(s) 257
BceAI ACGGC 2 cut(s) 79, 199
BciT130I CCWGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 346
BisI GCNGC 1 cut(s) 531
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 532
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 108, 130, 451
Bse1I ACTGG 2 cut(s) 287, 451
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 108, 130, 451
BseGI GGATG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 287, 451
BseXI GCAGC 1 cut(s) 542
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 2 cut(s) 39, 450
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 39, 450
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 2 cut(s) 30, 249
Bsp1720I GCTNAGC 1 cut(s) 230
Bsp19I CCATGG 2 cut(s) 130, 451
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 39, 450
BspPI GGATC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 346
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 2 cut(s) 287, 451
BssECI CCNNGG 3 cut(s) 108, 130, 451
BssMI GATC 2 cut(s) 30, 249
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 3 cut(s) 108, 130, 451
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 3 cut(s) 144, 400, 423
Bst6I CTCTTC 2 cut(s) 281, 461
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 346
BstAUI TGTACA 1 cut(s) 574
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 2 cut(s) 130, 451
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 33, 252
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 30, 249
BstMWI GCNNNNNNNGC 2 cut(s) 45, 536
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 542
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 249
BsuRI GGCC 2 cut(s) 39, 450
BtgI CCRYGG 2 cut(s) 130, 451
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 140, 428
Csp6I GTAC 2 cut(s) 280, 575
CviAII CATG 5 cut(s) 70, 131, 295, 381, 452
CviQI GTAC 2 cut(s) 280, 575
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 32, 251
DpnII GATC 2 cut(s) 30, 249
EaeI YGGCCR 2 cut(s) 37, 448
Eam1104I CTCTTC 2 cut(s) 281, 461
EarI CTCTTC 2 cut(s) 281, 461
Eco130I CCWWGG 3 cut(s) 108, 130, 451
Eco57I CTGAAG 2 cut(s) 555, 561
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 3 cut(s) 108, 130, 451
ErhI CCWWGG 3 cut(s) 108, 130, 451
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 5 cut(s) 73, 134, 298, 384, 455
FaiI YATR 9 cut(s) 20, 71, 132, 296, 382, 453, 579, 593, 619
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 69, 130, 294, 380, 451
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 531
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 39, 450
HapII CCGG 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 5 cut(s) 73, 134, 298, 384, 455
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 3 cut(s) 4, 317, 332
HpaII CCGG 1 cut(s) 49
HphI GGTGA 4 cut(s) 269, 317, 550, 602
Hpy188I TCNGA 2 cut(s) 90, 158
Hpy188III TCNNGA 1 cut(s) 341
Hpy99I CGWCG 5 cut(s) 97, 205, 208, 223, 226
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 3 cut(s) 144, 400, 423
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 536
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 5 cut(s) 73, 134, 298, 384, 455
Kzo9I GATC 2 cut(s) 30, 249
LmnI GCTCC 2 cut(s) 213, 569
Lsp1109I GCAGC 1 cut(s) 542
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 290, 556
MalI GATC 2 cut(s) 32, 251
MboI GATC 2 cut(s) 30, 249
MboII GAAGA 6 cut(s) 75, 136, 298, 478, 493, 554
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 3 cut(s) 244, 364, 405
MluNI TGGCCA 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 6 cut(s) 106, 226, 245, 260, 501, 592
Mox20I TGGCCA 1 cut(s) 450
MroXI GAANNNNTTC 1 cut(s) 336
MscI TGGCCA 1 cut(s) 450
MseI TTAA 2 cut(s) 347, 402
Msp20I TGGCCA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 346
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 45, 536
NcoI CCATGG 2 cut(s) 130, 451
NdeII GATC 2 cut(s) 30, 249
NlaIII CATG 5 cut(s) 73, 134, 298, 384, 455
NmuCI GTSAC 1 cut(s) 556
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 3 cut(s) 4, 317, 332
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 327
PsuI RGATCY 1 cut(s) 249
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 2 cut(s) 281, 576
RsaNI GTAC 2 cut(s) 280, 575
SaqAI TTAA 2 cut(s) 347, 402
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 2 cut(s) 30, 249
ScaI AGTACT 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 329
SetI ASST 9 cut(s) 45, 110, 206, 231, 353, 535, 541, 574, 584
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 3 cut(s) 244, 364, 405
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 3 cut(s) 108, 130, 451
TaaI ACNGT 3 cut(s) 144, 400, 423
TaiI ACGT 1 cut(s) 206
TaqI TCGA 3 cut(s) 147, 200, 224
TasI AATT 3 cut(s) 244, 364, 405
TatI WGTACW 2 cut(s) 279, 574
TfiI GAWTC 3 cut(s) 4, 317, 332
Tru1I TTAA 2 cut(s) 347, 402
Tru9I TTAA 2 cut(s) 347, 402
TscAI CASTG 2 cut(s) 147, 428
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 4 cut(s) 311, 330, 369, 561
TspRI CASTG 2 cut(s) 147, 428
Tth111I GACNNNGTC 1 cut(s) 152
Vha464I CTTAAG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.