Rh2DG328100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000356
Physical Location & Seq
Reverse (-)
41506228 .. 41506602
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG328100.1

Sequence Viewer

Length: 375 bp
ATGGAGAGCTATTCTTCCCGGACGGCGACTTATTCAACTGCGGCGGTGACGCAGAAGACCCGTGGCTCTACACTGTTCGACGCCGTCCGATTTAGACCGGACGATTTGCAGAACGGCGGCAGGTATTTGTCGACGTTGCTCCCGACCTCATCGATGACGCTAAATCGTCCTTGTTGCTCCCAAGAGGTCACTTCAGTCCGACGTGCGACGTCGTCGAGGAGGTCATCATCGGCTTCGATGATATCAATCTCCACCGCTCGACCCGAGGACCCGATCCGGCGAGGGCCTCAGCTCCTTTTGCAGATTCACCAGCCGCCATCATTTCAGCCTCAGCTCTATTTTGCATATCCACCAGCCGCCATCATTTCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.66

Weight (kDa)

10.26

Isoelectric Point (pI)

67.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 131
AciI CCGC 6 cut(s) 41, 44, 117, 255, 314, 357
AclWI GGATC 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 2 cut(s) 81, 209
AgsI TTSAA 1 cut(s) 36
AjiI CACGTC 1 cut(s) 203
AluBI AGCT 3 cut(s) 9, 292, 334
AluI AGCT 3 cut(s) 9, 292, 334
AlwI GGATC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 268, 284
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 58, 299
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 62
BbvCI CCTCAGC 2 cut(s) 288, 330
BccI CCATC 2 cut(s) 325, 368
BceAI ACGGC 3 cut(s) 39, 68, 130
BcnI CCSGG 1 cut(s) 19
BfaI CTAG 1 cut(s) 373
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 4 cut(s) 42, 118, 314, 357
BlsI GCNGC 4 cut(s) 43, 119, 315, 358
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 268, 284
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 2 cut(s) 288, 330
BpuMI CCSGG 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 245
BsaHI GRCGYC 2 cut(s) 81, 209
BsaJI CCNNGG 2 cut(s) 61, 264
BsaWI WCCGGW 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 61, 264
BseJI GATNNNNATC 1 cut(s) 245
BseMII CTCAG 2 cut(s) 302, 344
BseRI GAGGAG 1 cut(s) 232
BshFI GGCC 1 cut(s) 286
BshVI ATCGAT 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 19, 98, 277
BsnI GGCC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 6 cut(s) 41, 44, 117, 255, 314, 357
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 301, 343
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 61, 264
BssMI GATC 1 cut(s) 273
BssNI GRCGYC 2 cut(s) 81, 209
Bst4CI ACNGT 1 cut(s) 75
BstACI GRCGYC 2 cut(s) 81, 209
BstDEI CTNAG 2 cut(s) 288, 330
BstDSI CCRYGG 1 cut(s) 61
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 268, 284
ClaI ATCGAT 1 cut(s) 152
CseI GACGC 3 cut(s) 58, 89, 166
DdeI CTNAG 2 cut(s) 288, 330
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 2 cut(s) 268, 284
EcoRV GATATC 1 cut(s) 243
FaiI YATR 1 cut(s) 346
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 4 cut(s) 42, 118, 314, 357
Fsp4HI GCNGC 4 cut(s) 42, 118, 314, 357
FspBI CTAG 1 cut(s) 373
GluI GCNGC 4 cut(s) 42, 118, 314, 357
HaeIII GGCC 1 cut(s) 286
HapII CCGG 3 cut(s) 19, 98, 277
HgaI GACGC 3 cut(s) 58, 89, 166
Hin1I GRCGYC 2 cut(s) 81, 209
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 1 cut(s) 304
HpaII CCGG 3 cut(s) 19, 98, 277
HphI GGTGA 2 cut(s) 58, 299
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 89, 200
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 6 cut(s) 83, 136, 204, 211, 214, 217
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 3 cut(s) 134, 202, 209
HpyCH4V TGCA 3 cut(s) 109, 301, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 288, 330
HpySE526I ACGT 3 cut(s) 134, 202, 209
Hsp92I GRCGYC 2 cut(s) 81, 209
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 3 cut(s) 144, 182, 297
LpnPI CCDG 6 cut(s) 32, 106, 111, 290, 323, 366
MaeI CTAG 1 cut(s) 373
MaeII ACGT 3 cut(s) 134, 202, 209
MaeIII GTNAC 2 cut(s) 46, 187
MalI GATC 1 cut(s) 275
MbiI CCGCTC 1 cut(s) 257
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 6, 67
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 8 cut(s) 157, 178, 210, 213, 259, 275, 297, 339
MspI CCGG 3 cut(s) 19, 98, 277
MspR9I CCNGG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 19
NdeII GATC 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 46, 187
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 1 cut(s) 304
PflFI GACNNNGTC 2 cut(s) 83, 211
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 4 cut(s) 43, 119, 315, 358
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 268, 284
PspPPI RGGWCCY 1 cut(s) 268
PsyI GACNNNGTC 2 cut(s) 83, 211
SalI GTCGAC 1 cut(s) 130
SatI GCNGC 4 cut(s) 42, 118, 314, 357
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 268, 284
ScrFI CCNGG 1 cut(s) 19
SinI GGWCC 1 cut(s) 268
SsiI CCGC 6 cut(s) 41, 44, 117, 255, 314, 357
SspMI CTAG 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 3 cut(s) 137, 205, 212
TaqI TCGA 6 cut(s) 78, 131, 152, 215, 236, 259
TauI GCSGC 4 cut(s) 44, 120, 316, 359
TfiI GAWTC 1 cut(s) 304
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 46, 187
Tsp45I GTSAC 2 cut(s) 46, 187
TspRI CASTG 1 cut(s) 78
Tth111I GACNNNGTC 2 cut(s) 83, 211
VpaK11BI GGWCC 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 131
XspI CTAG 1 cut(s) 373
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.