Rmu_sc0012513.1_g000008

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012513.1
OG0000356
Physical Location & Seq
Reverse (-)
55897 .. 57332
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012513.1_g000008.1.cds

Sequence Viewer

Length: 681 bp
atgattctttctcaatccatatctggtacagatcatcggccaccttcgccggagaaagtttcacggcgacatggaaagctattcttctcggacgacgacttattcaaccttggaggcgaagcagaagacccatggctttacactgttcgacatcgcctcgtctccaattggatctctggtgatgatggaggcttaatcaagtactggaagagtaacatgaataatgtgctagtcaatgaatctgctcaccaggaatcagttcgggacttaagcttctattggagtaatttgaagttttgttcatgttcagatgatactactgttaaaattggggattttgaacagtgccaacaagagcagacattgactggccatggttggaatgtgaagagagttgattggctcttatttcctctgctcatcatctacttgctattcaatctctcctgtgcagctgaagctgaagatgaaaaaaatgtcaccaacattggagcaatcattgatgttactattgccgatgaccggaatccggcgaaagttggccggattccggcgaccggtgaccggattccggagaaagttggcctgattccggtgaccggattccggcggccggtgacgggctccggcaaagtctcctatggtttctctctcttccattttctctatctctctctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005847 GO:0005849 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006974 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0018130 GO:0019438 GO:0019953 GO:0022414 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032774 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044703 GO:0045184 GO:0046483 GO:0046907 GO:0048232 GO:0048609 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0097659 GO:1901360 GO:1901362 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
Collagen WD40

Protein Analysis

226

Amino Acids

25.44

Weight (kDa)

5.67

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 571
AciI CCGC 1 cut(s) 610
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 4 cut(s) 38, 370, 541, 611
AcuI CTGAAG 2 cut(s) 477, 483
AfaI GTAC 2 cut(s) 28, 203
AflII CTTAAG 1 cut(s) 268
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 106, 292, 341, 439
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 79, 273, 455, 461
AluI AGCT 4 cut(s) 79, 273, 455, 461
Alw26I GTCTC 2 cut(s) 166, 640
AlwI GGATC 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 571
AoxI GGCC 5 cut(s) 38, 370, 541, 583, 611
ApeKI GCWGC 1 cut(s) 452
AsiGI ACCGGT 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 258
AsuHPI GGTGA 6 cut(s) 191, 239, 472, 572, 607, 628
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BalI TGGCCA 1 cut(s) 372
BanII GRGCYC 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 464
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 166, 640
BfaI CTAG 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 268
BisI GCNGC 2 cut(s) 453, 611
BlsI GCNGC 2 cut(s) 454, 612
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 109, 131, 373
BsaWI WCCGGW 6 cut(s) 522, 557, 564, 571, 592, 599
Bse118I RCCGGY 2 cut(s) 557, 613
Bse1I ACTGG 2 cut(s) 209, 373
BseAI TCCGGA 1 cut(s) 571
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 109, 131, 373
BseNI ACTGG 2 cut(s) 209, 373
BseX3I CGGCCG 1 cut(s) 611
BseXI GCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 471
Bsh1285I CGRYCG 2 cut(s) 558, 614
BshFI GGCC 5 cut(s) 40, 372, 543, 585, 613
BshTI ACCGGT 1 cut(s) 557
BsiEI CGRYCG 2 cut(s) 558, 614
BslFI GGGAC 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 166, 640
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 5 cut(s) 40, 372, 543, 585, 613
Bsp1286I GDGCHC 1 cut(s) 626
Bsp13I TCCGGA 1 cut(s) 571
Bsp143I GATC 2 cut(s) 31, 171
Bsp19I CCATGG 2 cut(s) 131, 373
BspACI CCGC 1 cut(s) 610
BspANI GGCC 5 cut(s) 40, 372, 543, 585, 613
BspEI TCCGGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 625
BspPI GGATC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 557, 613
BsrI ACTGG 2 cut(s) 209, 373
BssAI RCCGGY 2 cut(s) 557, 613
BssECI CCNNGG 3 cut(s) 109, 131, 373
BssMI GATC 2 cut(s) 31, 171
BssT1I CCWWGG 3 cut(s) 109, 131, 373
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 145, 322, 345
Bst6I CTCTTC 3 cut(s) 203, 383, 659
BstAFI CTTAAG 1 cut(s) 268
BstDSI CCRYGG 2 cut(s) 131, 373
BstEII GGTNACC 2 cut(s) 560, 595
BstKTI GATC 2 cut(s) 34, 174
BstMAI GTCTC 2 cut(s) 166, 640
BstMBI GATC 2 cut(s) 31, 171
BstMCI CGRYCG 2 cut(s) 558, 614
BstMWI GCNNNNNNNGC 2 cut(s) 46, 458
BstNI CCWGG 1 cut(s) 251
BstPI GGTNACC 2 cut(s) 560, 595
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BstZI CGGCCG 1 cut(s) 611
BsuRI GGCC 5 cut(s) 40, 372, 543, 585, 613
BtgI CCRYGG 2 cut(s) 131, 373
BtgZI GCGATG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 141, 350
Cfr10I RCCGGY 2 cut(s) 557, 613
Csp6I GTAC 2 cut(s) 27, 202
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 5 cut(s) 71, 132, 217, 303, 374
CviQI GTAC 2 cut(s) 27, 202
DpnI GATC 2 cut(s) 33, 173
DpnII GATC 2 cut(s) 31, 171
EaeI YGGCCR 4 cut(s) 38, 370, 541, 611
EagI CGGCCG 1 cut(s) 611
Eam1104I CTCTTC 3 cut(s) 203, 383, 659
EarI CTCTTC 3 cut(s) 203, 383, 659
EclXI CGGCCG 1 cut(s) 611
Eco130I CCWWGG 3 cut(s) 109, 131, 373
Eco24I GRGCYC 1 cut(s) 626
Eco52I CGGCCG 1 cut(s) 611
Eco57I CTGAAG 2 cut(s) 477, 483
Eco91I GGTNACC 2 cut(s) 560, 595
EcoO65I GGTNACC 2 cut(s) 560, 595
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 3 cut(s) 109, 131, 373
EcoT38I GRGCYC 1 cut(s) 626
ErhI CCWWGG 3 cut(s) 109, 131, 373
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 5 cut(s) 74, 135, 220, 306, 377
FaiI YATR 7 cut(s) 20, 72, 133, 218, 304, 375, 642
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 278
FatI CATG 5 cut(s) 70, 131, 216, 302, 373
Fnu4HI GCNGC 2 cut(s) 453, 611
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 2 cut(s) 453, 611
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 453, 611
HaeIII GGCC 5 cut(s) 40, 372, 543, 585, 613
Hin1II CATG 5 cut(s) 74, 135, 220, 306, 377
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 8 cut(s) 4, 239, 254, 526, 547, 568, 589, 603
HphI GGTGA 6 cut(s) 191, 239, 472, 572, 607, 628
Hpy188I TCNGA 2 cut(s) 91, 310
Hpy188III TCNNGA 2 cut(s) 263, 572
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 3 cut(s) 145, 322, 345
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 458
Hsp92II CATG 5 cut(s) 74, 135, 220, 306, 377
Kpn2I TCCGGA 1 cut(s) 571
Kzo9I GATC 2 cut(s) 31, 171
LmnI GCTCC 2 cut(s) 491, 629
Lsp1109I GCAGC 1 cut(s) 464
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 6 cut(s) 212, 478, 505, 560, 595, 616
MalI GATC 2 cut(s) 33, 173
MboI GATC 2 cut(s) 31, 171
MboII GAAGA 6 cut(s) 76, 137, 220, 400, 476, 646
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 626
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 3 cut(s) 166, 286, 327
MluNI TGGCCA 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 4 cut(s) 107, 167, 182, 423
Mox20I TGGCCA 1 cut(s) 372
MroI TCCGGA 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 372
MseI TTAA 3 cut(s) 194, 269, 324
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 455
MspCI CTTAAG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 46, 458
NcoI CCATGG 2 cut(s) 131, 373
NdeII GATC 2 cut(s) 31, 171
NlaIII CATG 5 cut(s) 74, 135, 220, 306, 377
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 4 cut(s) 478, 560, 595, 616
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 8 cut(s) 4, 239, 254, 526, 547, 568, 589, 603
PinAI ACCGGT 1 cut(s) 557
PkrI GCNGC 2 cut(s) 454, 612
Psp6I CCWGG 1 cut(s) 249
PspEI GGTNACC 2 cut(s) 560, 595
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 625
PsuI RGATCY 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 28, 203
RsaNI GTAC 2 cut(s) 27, 202
SaqAI TTAA 3 cut(s) 194, 269, 324
SatI GCNGC 2 cut(s) 453, 611
Sau3AI GATC 2 cut(s) 31, 171
ScaI AGTACT 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 626
SetI ASST 6 cut(s) 46, 81, 111, 275, 457, 463
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 3 cut(s) 166, 286, 327
SsiI CCGC 1 cut(s) 610
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 3 cut(s) 109, 131, 373
TaaI ACNGT 3 cut(s) 145, 322, 345
TaqI TCGA 1 cut(s) 148
TasI AATT 3 cut(s) 166, 286, 327
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 8 cut(s) 4, 239, 254, 526, 547, 568, 589, 603
Tru1I TTAA 3 cut(s) 194, 269, 324
Tru9I TTAA 3 cut(s) 194, 269, 324
TscAI CASTG 2 cut(s) 148, 350
TseFI GTSAC 4 cut(s) 478, 560, 595, 616
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 4 cut(s) 478, 560, 595, 616
TspDTI ATGAA 4 cut(s) 233, 252, 291, 483
TspRI CASTG 2 cut(s) 148, 350
Vha464I CTTAAG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.