Rmu_sc0006103.1_g000005

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006103.1
Physical Location & Seq
Forward (+)
18353 .. 19564
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006103.1_g000005.1.cds

Sequence Viewer

Length: 1212 bp
ctgtcgtgcaatacacagactcgaaagcggcagcgtgatgcaagggatacaacagtgttgcaacctacaccagcagcatcaatcaattcgttgccgccggttgcgtattcggataacccatctaggagctttgctgcaaagtttgtgcatgcttgtacaaattacagagcccgtacttgtccgattaatcgggttttgtggacaccttccgggaggcgtctcattacagggtcccaaaatggggagttcactctttgggatggtcagtcatttaactatgaattgagttttctggctcatgatcaagcagtcaggtctatggcgtggagttatgatggtgagaattggatttctggtgatgatgggggatcaataaagtattggacgagtaacatgaacaatgtgctagtcaatgaatctgctcaccgagaatcggttcgggacttgagcttttgtaggactaatttgaagttctgttcatgttcggatgatacttatgtgaaaatctgggattatgaaaggtgccaagaagagttcagattgactggccatggttggaatgtgaagagtgttgactggcaccctacaaagtccttactagcttcaggtgggaaagacagtgttgtcaaactgtgggatgctaggacagggagagagctttgttcatttcatgatcacaaaaattgggtgcaatctgttaagtggagccgaaatggtaactggctgctaactgcttccaaggatcaagtcattaagctttacgacatgagggctatgaaggaacttgaatcattccacgggcatcggaatgaagtgactgctatagcttggcatccttttcatgaagaatattttgtcagtgggagtagtgatggatccattttccattggcttgttgggcatgaaactccccaggttgaagttcctaatgcacacagtaacaatcataataacagtgtgtgggatctccaatggcatcctattggtcatatgctttgcagtggtagcaatgatcgcacaacaaagttttggtgcagaaataggccaggagataaatgtaacatcagtcagaatcaaagtattggtgatcgaagttctgcttttgctggtcacatgactggtaactttccatttccattacatgaaggacaaccaaaaattgctactcgaaaccaaggagccattattccaggtgttggatttgcaatttaa

Protein Analysis

403

Amino Acids

45.8

Weight (kDa)

8.28

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 522, 579
AccB7I CCANNNNNTGG 1 cut(s) 1196
AciI CCGC 2 cut(s) 28, 95
AclWI GGATC 5 cut(s) 376, 750, 870, 883, 972
AcoI YGGCCR 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 2 cut(s) 157, 175
AfiI CCNNNNNNNGG 4 cut(s) 240, 241, 433, 1196
AgsI TTSAA 3 cut(s) 469, 788, 920
AjnI CCWGG 3 cut(s) 912, 1045, 1189
AluBI AGCT 6 cut(s) 129, 450, 602, 658, 757, 827
AluI AGCT 6 cut(s) 129, 450, 602, 658, 757, 827
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 5 cut(s) 376, 750, 870, 883, 972
AoxI GGCC 2 cut(s) 547, 1043
ApeKI GCWGC 4 cut(s) 31, 74, 134, 724
AseI ATTAAT 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 4 cut(s) 350, 368, 416, 1097
AvaII GGWCC 1 cut(s) 231
BaeI ACNNNNGTAYC 4 cut(s) 39, 72, 483, 516
BalI TGGCCA 1 cut(s) 549
BamHI GGATCC 1 cut(s) 875
BanI GGYRCC 2 cut(s) 522, 579
BanII GRGCYC 1 cut(s) 172
BbvI GCAGC 4 cut(s) 43, 86, 121, 711
BccI CCATC 5 cut(s) 127, 254, 329, 356, 866
BciT130I CCWGG 3 cut(s) 914, 1047, 1191
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 2 cut(s) 301, 673
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 4 cut(s) 123, 407, 599, 642
BfmI CTRYAG 1 cut(s) 822
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 6 cut(s) 29, 32, 75, 95, 135, 725
BlsI GCNGC 6 cut(s) 30, 33, 76, 96, 136, 726
Bme1390I CCNGG 4 cut(s) 211, 914, 1047, 1191
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 7 cut(s) 232, 233, 524, 581, 707, 877, 1180
BmrFI CCNGG 4 cut(s) 211, 914, 1047, 1191
BmsI GCATC 6 cut(s) 28, 86, 628, 811, 841, 985
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 5 cut(s) 550, 738, 796, 912, 1174
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 241, 433, 1196
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 4 cut(s) 550, 581, 725, 1123
Bse3DI GCAATG 1 cut(s) 1015
BseBI CCWGG 3 cut(s) 914, 1047, 1191
BseDI CCNNGG 5 cut(s) 550, 738, 796, 912, 1174
BseGI GGATG 5 cut(s) 265, 493, 643, 832, 976
BseLI CCNNNNNNNGG 4 cut(s) 240, 241, 433, 1196
BseMI GCAATG 1 cut(s) 1015
BseNI ACTGG 4 cut(s) 550, 581, 725, 1123
BseXI GCAGC 4 cut(s) 43, 86, 121, 711
BsgI GTGCAG 1 cut(s) 1054
BshFI GGCC 2 cut(s) 549, 1045
BshNI GGYRCC 2 cut(s) 522, 579
BsiSI CCGG 2 cut(s) 98, 210
BslFI GGGAC 2 cut(s) 217, 455
BslI CCNNNNNNNGG 4 cut(s) 240, 241, 433, 1196
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 217, 455
BsnI GGCC 2 cut(s) 549, 1045
Bsp1286I GDGCHC 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 2 cut(s) 28, 95
BspANI GGCC 2 cut(s) 549, 1045
BspHI TCATGA 3 cut(s) 298, 670, 841
BspLI GGNNCC 7 cut(s) 232, 233, 524, 581, 707, 877, 1180
BspPI GGATC 5 cut(s) 376, 750, 870, 883, 972
BspT107I GGYRCC 2 cut(s) 522, 579
BsrDI GCAATG 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 155
BsrI ACTGG 4 cut(s) 550, 581, 725, 1123
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 5 cut(s) 550, 738, 796, 912, 1174
BssMI GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 3 cut(s) 550, 738, 1174
Bst2UI CCWGG 3 cut(s) 914, 1047, 1191
Bst4CI ACNGT 5 cut(s) 55, 620, 633, 938, 956
Bst6I CTCTTC 2 cut(s) 525, 560
BstACI GRCGYC 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 150
BstDSI CCRYGG 2 cut(s) 550, 796
BstF5I GGATG 5 cut(s) 265, 493, 643, 832, 976
BstKTI GATC 8 cut(s) 304, 371, 676, 745, 878, 967, 1015, 1090
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 898, 1005, 1014
BstNI CCWGG 3 cut(s) 914, 1047, 1191
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 4 cut(s) 209, 912, 1045, 1189
BstSFI CTRYAG 1 cut(s) 822
BstV1I GCAGC 4 cut(s) 43, 86, 121, 711
BstX2I RGATCY 2 cut(s) 875, 964
BstYI RGATCY 2 cut(s) 875, 964
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 549, 1045
BtgI CCRYGG 2 cut(s) 550, 796
BtsCI GGATG 5 cut(s) 265, 493, 643, 832, 976
BtsI GCAGTG 1 cut(s) 1006
BtsIMutI CAGTG 5 cut(s) 60, 625, 865, 961, 1006
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 3 cut(s) 298, 670, 841
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 156, 174
CviQI GTAC 2 cut(s) 156, 174
DpnI GATC 8 cut(s) 303, 370, 675, 744, 877, 966, 1014, 1089
DpnII GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 525, 560
EarI CTCTTC 2 cut(s) 525, 560
Eco130I CCWWGG 3 cut(s) 550, 738, 1174
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 912, 1045, 1189
EcoT14I CCWWGG 3 cut(s) 550, 738, 1174
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 3 cut(s) 550, 738, 1174
Esp3I CGTCTC 1 cut(s) 224
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FaqI GGGAC 2 cut(s) 217, 455
FauNDI CATATG 1 cut(s) 990
FbaI TGATCA 2 cut(s) 301, 673
Fnu4HI GCNGC 6 cut(s) 29, 32, 75, 95, 135, 725
FokI GGATG 5 cut(s) 272, 500, 650, 819, 963
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 6 cut(s) 29, 32, 75, 95, 135, 725
FspBI CTAG 4 cut(s) 123, 407, 599, 642
GluI GCNGC 6 cut(s) 29, 32, 75, 95, 135, 725
HaeIII GGCC 2 cut(s) 549, 1045
HapII CCGG 2 cut(s) 98, 210
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 5 cut(s) 19, 416, 431, 788, 1072
HpaII CCGG 2 cut(s) 98, 210
HphI GGTGA 4 cut(s) 350, 368, 416, 1097
Hpy166II GTNNAC 3 cut(s) 201, 249, 574
Hpy188I TCNGA 6 cut(s) 112, 183, 487, 539, 807, 1071
Hpy188III TCNNGA 4 cut(s) 299, 440, 671, 842
Hpy8I GTNNAC 3 cut(s) 201, 249, 574
HpyAV CCTTC 3 cut(s) 216, 772, 1139
HpyCH4III ACNGT 5 cut(s) 55, 620, 633, 938, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 898, 1005, 1014
Hsp92I GRCGYC 1 cut(s) 217
KflI GGGWCCC 1 cut(s) 231
Ksp22I TGATCA 2 cut(s) 301, 673
Kzo9I GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
LmnI GCTCC 3 cut(s) 126, 705, 1178
Lsp1109I GCAGC 4 cut(s) 43, 86, 121, 711
LweI GCATC 6 cut(s) 28, 86, 628, 811, 841, 985
MaeI CTAG 4 cut(s) 123, 407, 599, 642
MaeIII GTNAC 7 cut(s) 389, 716, 814, 938, 1058, 1109, 1121
MalI GATC 8 cut(s) 303, 370, 675, 744, 877, 966, 1014, 1089
MboI GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
MboII GAAGA 3 cut(s) 542, 577, 857
MflI RGATCY 2 cut(s) 875, 964
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 8 cut(s) 85, 160, 281, 343, 463, 682, 1158, 1206
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 536, 1177
MnlI CCTC 2 cut(s) 207, 762
Mox20I TGGCCA 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 549
MseI TTAA 5 cut(s) 186, 273, 699, 753, 1210
MslI CAYNNNNRTG 1 cut(s) 807
Msp20I TGGCCA 1 cut(s) 549
MspI CCGG 2 cut(s) 98, 210
MspR9I CCNGG 4 cut(s) 211, 914, 1047, 1191
MvaI CCWGG 3 cut(s) 914, 1047, 1191
MwoI GCNNNNNNNGC 3 cut(s) 898, 1005, 1014
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 550
NdeI CATATG 1 cut(s) 990
NdeII GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
NlaIV GGNNCC 7 cut(s) 232, 233, 524, 581, 707, 877, 1180
NmuCI GTSAC 2 cut(s) 814, 1109
NspI RCATGY 1 cut(s) 152
PaeI GCATGC 1 cut(s) 152
PagI TCATGA 3 cut(s) 298, 670, 841
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 4 cut(s) 416, 431, 788, 1072
PflMI CCANNNNNTGG 1 cut(s) 1196
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 6 cut(s) 30, 33, 76, 96, 136, 726
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 912, 1045, 1189
PspGI CCWGG 3 cut(s) 912, 1045, 1189
PspN4I GGNNCC 7 cut(s) 232, 233, 524, 581, 707, 877, 1180
PspPI GGNCC 1 cut(s) 231
PspPPI RGGWCCY 1 cut(s) 231
PsuI RGATCY 2 cut(s) 875, 964
RsaI GTAC 2 cut(s) 157, 175
RsaNI GTAC 2 cut(s) 156, 174
RseI CAYNNNNRTG 1 cut(s) 807
SaqAI TTAA 5 cut(s) 186, 273, 699, 753, 1210
SatI GCNGC 6 cut(s) 29, 32, 75, 95, 135, 725
Sau3AI GATC 8 cut(s) 301, 368, 673, 742, 875, 964, 1012, 1087
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 4 cut(s) 211, 914, 1047, 1191
SduI GDGCHC 1 cut(s) 172
SfaNI GCATC 6 cut(s) 28, 86, 628, 811, 841, 985
SfcI CTRYAG 1 cut(s) 822
SinI GGWCC 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SphI GCATGC 1 cut(s) 152
Sse9I AATT 8 cut(s) 85, 160, 281, 343, 463, 682, 1158, 1206
SsiI CCGC 2 cut(s) 28, 95
SspI AATATT 1 cut(s) 851
SspMI CTAG 4 cut(s) 123, 407, 599, 642
StyD4I CCNGG 4 cut(s) 209, 912, 1045, 1189
StyI CCWWGG 3 cut(s) 550, 738, 1174
TaaI ACNGT 5 cut(s) 55, 620, 633, 938, 956
TaqI TCGA 3 cut(s) 22, 1090, 1168
TasI AATT 8 cut(s) 85, 160, 281, 343, 463, 682, 1158, 1206
TatI WGTACW 1 cut(s) 155
TauI GCSGC 2 cut(s) 31, 97
TfiI GAWTC 4 cut(s) 416, 431, 788, 1072
Tru1I TTAA 5 cut(s) 186, 273, 699, 753, 1210
Tru9I TTAA 5 cut(s) 186, 273, 699, 753, 1210
TscAI CASTG 5 cut(s) 60, 625, 865, 961, 1006
TseFI GTSAC 2 cut(s) 814, 1109
TseI GCWGC 4 cut(s) 31, 74, 134, 724
Tsp45I GTSAC 2 cut(s) 814, 1109
TspRI CASTG 5 cut(s) 60, 625, 865, 961, 1006
Van91I CCANNNNNTGG 1 cut(s) 1196
VpaK11BI GGWCC 1 cut(s) 231
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 4 cut(s) 123, 407, 599, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.