Rmu_sc0006571.1_g000003

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006571.1
OG0000356
Physical Location & Seq
Reverse (-)
9437 .. 9953
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006571.1_g000003.1.cds

Sequence Viewer

Length: 462 bp
atgagatcgatttccaccgctcgacccgaggacctcagctcctttttacagaaccaccagccgccgttgtttcagcctagggctccagcgacctgcctcgtctccaattggatctctggtgatgatggaggctcaatcaagtactggaagagtaacatgaataatgtgctagtcaatgaatctgcataccaggaatcagttctggacttaagcttctattggagtaatttgaagttttgttcatgttcggatgatactactgttaaaattggggattttgaacagtgccaacaagagcaggcattgactggccatggttggaatgtgaagagtgttgactggctcttatttcctctgctcatcttctacttgctattcaatctctcctgtgcagctgaagctgaagatgaaaaaaatgtcaccaacattggagcaatcattgatgttactattggtacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005847 GO:0005849 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006974 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0018130 GO:0019438 GO:0019953 GO:0022414 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032774 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044703 GO:0045184 GO:0046483 GO:0046907 GO:0048232 GO:0048609 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0097659 GO:1901360 GO:1901362 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
Collagen WD40

Protein Analysis

153

Amino Acids

17.14

Weight (kDa)

4.44

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 2 cut(s) 18, 62
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 310
AcuI CTGAAG 2 cut(s) 417, 423
AfaI GTAC 2 cut(s) 143, 457
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 3 cut(s) 232, 281, 379
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 4 cut(s) 39, 213, 395, 401
AluI AGCT 4 cut(s) 39, 213, 395, 401
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 198
AspA2I CCTAGG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 131, 412
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 31
AvrII CCTAGG 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BalI TGGCCA 1 cut(s) 312
BanII GRGCYC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 404
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 78, 170
BfrI CTTAAG 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 62, 393
BlnI CCTAGG 1 cut(s) 77
BlsI GCNGC 2 cut(s) 63, 394
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 27, 77, 313
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 3 cut(s) 149, 313, 344
BseBI CCWGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 27, 77, 313
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 3 cut(s) 149, 313, 344
BseXI GCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 5, 111
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 2 cut(s) 18, 62
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 119
BspTI CTTAAG 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 3 cut(s) 149, 313, 344
BssECI CCNNGG 3 cut(s) 27, 77, 313
BssMI GATC 2 cut(s) 5, 111
BssT1I CCWWGG 2 cut(s) 77, 313
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 262, 285
Bst6I CTCTTC 2 cut(s) 143, 323
BstAFI CTTAAG 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 8, 114
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 5, 111
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 8
BsuRI GGCC 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 8
Csp6I GTAC 2 cut(s) 142, 456
CviAII CATG 3 cut(s) 157, 243, 314
CviQI GTAC 2 cut(s) 142, 456
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 7, 113
DpnII GATC 2 cut(s) 5, 111
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 143, 323
EarI CTCTTC 2 cut(s) 143, 323
Eco130I CCWWGG 2 cut(s) 77, 313
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 417, 423
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 77, 313
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 77, 313
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 160, 246, 317
FaiI YATR 4 cut(s) 158, 187, 244, 315
FatI CATG 3 cut(s) 156, 242, 313
Fnu4HI GCNGC 2 cut(s) 62, 393
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 62, 393
FspBI CTAG 2 cut(s) 78, 170
GluI GCNGC 2 cut(s) 62, 393
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 312
Hin1II CATG 3 cut(s) 160, 246, 317
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 2 cut(s) 179, 194
HphI GGTGA 2 cut(s) 131, 412
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 262, 285
HpyCH4V TGCA 2 cut(s) 185, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 3 cut(s) 160, 246, 317
Kzo9I GATC 2 cut(s) 5, 111
LmnI GCTCC 3 cut(s) 44, 88, 431
Lsp1109I GCAGC 1 cut(s) 404
MaeI CTAG 2 cut(s) 78, 170
MaeIII GTNAC 3 cut(s) 152, 418, 445
MalI GATC 2 cut(s) 7, 113
MbiI CCGCTC 1 cut(s) 20
MboI GATC 2 cut(s) 5, 111
MboII GAAGA 4 cut(s) 160, 340, 355, 416
MfeI CAATTG 1 cut(s) 106
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 106, 226, 267
MluNI TGGCCA 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 5 cut(s) 22, 44, 107, 122, 363
Mox20I TGGCCA 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 312
MseI TTAA 2 cut(s) 209, 264
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 398
NcoI CCATGG 1 cut(s) 313
NdeII GATC 2 cut(s) 5, 111
NlaIII CATG 3 cut(s) 160, 246, 317
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 179, 194
PkrI GCNGC 2 cut(s) 63, 394
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
PsuI RGATCY 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 143, 457
RsaNI GTAC 2 cut(s) 142, 456
SaqAI TTAA 2 cut(s) 209, 264
SatI GCNGC 2 cut(s) 62, 393
Sau3AI GATC 2 cut(s) 5, 111
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 85
SetI ASST 6 cut(s) 36, 41, 95, 215, 397, 403
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 106, 226, 267
SsiI CCGC 2 cut(s) 18, 62
SspMI CTAG 2 cut(s) 78, 170
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 77, 313
TaaI ACNGT 2 cut(s) 262, 285
TaqI TCGA 2 cut(s) 8, 22
TasI AATT 3 cut(s) 106, 226, 267
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 179, 194
Tru1I TTAA 2 cut(s) 209, 264
Tru9I TTAA 2 cut(s) 209, 264
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 4 cut(s) 173, 192, 231, 423
TspRI CASTG 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 31
XmaJI CCTAGG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 2 cut(s) 78, 170
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.