Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

32143538 .. 32144761

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCCCATCACCACCACCCCTACGCCCAGACTACAGTTGATTACACCGGCTCTGTCGTCCGATACACACAGAATCGAAAGTGGTCCTCCTCAGATCCGTTGCCAGCGGCTGCCTGTTCTTCGACTAACAACAACCCATTTGCCGCCCAGTTTGTGCGCTCTTGTACAAATTACAGAGCCCGTGCTTCTTCGATCAATCGAGTTTTATGGACACCTTCTGGGAGGCGTCTTATTACAGGCTCTCAAAATGGGGAGTTCACTCTTTGGAATGGCCACTCATTCAACCATGAATTGAGGATTCAGGGTCATGATCACGCAATCAGGTCCATGGCGTGGAGTTTTAATGATGAAGATTGGATCTCTGGTGATGATGGAGGCACAATCAGGTATTGGAACAGTAACATGAGTAATGTGCTAGTCAATGAATCTGCTCACCATGAATCGGTTCGGGACTTGAGCTTCTGTCGGAGTAATTTGAAGTTTTGTTCATGTTCCGATGATACCACTGTTAAAATCTGGGATTTTGAACGGTGCCAACAAGAGCAGACATTGACCGGCCACGGTTGGAATGTCAAGAGTGTTGACTGGCACCCCACAAACTCTCTGATAGCTTCGGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGTCACGCAGAGAACTTTGTTCGTTTTATGACCACAAAAATTGGGTGCATTCTGTCAAGTGGAACCGAAATGGTAACTGGCTGCTAACTGCTTCCAAGGATCATGTCATTAAGCTTTACGACTTGAGGGCTATGAAGGAGCTTAAATCTTTCCGCGGCCATCAGAACCAAGTGACTGCTCTAGCTTGGCATCCCCTTACTGAAGACTATTTCGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGTAACTCCCCAGGTTGAAATTCCTAATGCACACAGTAACAGTTACAATAATAGTGTGTGGGATCTCCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGTAGCAATGATCGCACCACCAAGTTTTGGTGCAGGACAGGAGATAAATCTAAAATCAGTCAGAATCAAAGTAATTCTGATTTTGCTCGTCACATGAACAGTAATTCTCCTTTTCCATATCATGGACCACCAACTATTGCTACTCGAGACCAAGGAACCATTGGTTCAGGAGGTGTTGGAACCATTATACCAGGTGTTGGAATTGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

407

Amino Acids

46.02

Weight (kDa)

8.53

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	22 - 223	2e-24	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	52 - 268	1.1e-20	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	53 - 184	1e-17	WDR5 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	58 - 149	1.1e-09	IFT140 first beta-propeller
Beta-prop_WDR3_1st	PF25173	59 - 210	4.5e-23	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	63 - 137	3.6e-08	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	64 - 215	1.3e-07	EIPR1 beta-propeller
WD40_Prp19	PF24814	65 - 268	2.3e-31	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	65 - 223	2.7e-16	WDHD1 first WD40 domain
WDR55	PF24796	70 - 176	9.9e-11	WDR55
Beta-prop_WDR36-Utp21_1st	PF25171	77 - 215	3e-06	WDR36/Utp21 first beta-propeller
EIF3I	PF24805	97 - 182	2.4e-08	EIF3I
Beta-prop_TEP1_2nd	PF25047	109 - 278	3.1e-16	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	121 - 309	5.5e-19	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	132 - 263	2.4e-16	WDR55
Beta-prop_Aladin	PF25460	135 - 264	2.4e-06	Aladin seven-bladed propeller
Beta-prop_EIPR1	PF23609	136 - 257	1e-07	EIPR1 beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	143 - 221	3e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	144 - 258	2.8e-26	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	144 - 217	2.1e-10	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	145 - 223	2.9e-17	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	157 - 302	1.1e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	161 - 249	2.2e-08	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st	PF25173	172 - 300	1e-26	WDR3 first beta-propeller domain
WD40	PF00400	179 - 216	5.9e-10	WD domain, G-beta repeat
Beta-prop_EML	PF23409	185 - 290	4.8e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	186 - 350	8.2e-26	WDR5 beta-propeller domain
EIF3I	PF24805	189 - 272	5.7e-10	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	191 - 358	1e-08	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	211 - 352	2.7e-20	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	212 - 348	4e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	223 - 351	5.8e-11	WDR3 second beta-propeller domain
WD40	PF00400	223 - 258	8.7e-08	WD domain, G-beta repeat
Beta-prop_DCAF4	PF23761	224 - 287	2.7e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	229 - 360	6.7e-24	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	233 - 339	1.7e-12	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	245 - 345	7.4e-06	WDR90/POC16, second beta-propeller
WD40	PF00400	263 - 300	9.3e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	265 - 361	2.9e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	266 - 347	5.2e-09	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	632, 863
AccB1I	GGYRCC	2 cut(s)	531, 588
AccB7I	CCANNNNNTGG	4 cut(s)	333, 1038, 1133, 1208
AccII	CGCG	1 cut(s)	807
AciI	CCGC	5 cut(s)	107, 144, 805, 807, 1217
AclWI	GGATC	6 cut(s)	89, 365, 759, 879, 892, 981
AcoI	YGGCCR	3 cut(s)	271, 556, 808
AcsI	RAATTY	1 cut(s)	930
AcuI	CTGAAG	1 cut(s)	873
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	5 cut(s)	333, 442, 1038, 1133, 1208
AgsI	TTSAA	4 cut(s)	283, 478, 527, 929
AjnI	CCWGG	2 cut(s)	921, 1201
AluBI	AGCT	5 cut(s)	459, 611, 766, 793, 836
AluI	AGCT	5 cut(s)	459, 611, 766, 793, 836
Alw26I	GTCTC	1 cut(s)	1152
AlwI	GGATC	6 cut(s)	89, 365, 759, 879, 892, 981
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	1155
AoxI	GGCC	4 cut(s)	3, 271, 556, 808
ApeKI	GCWGC	2 cut(s)	110, 733
ApoI	RAATTY	1 cut(s)	930
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	4 cut(s)	4, 84, 324, 1136
AsuHPI	GGTGA	2 cut(s)	377, 425
AvaI	CYCGRG	1 cut(s)	1155
AvaII	GGWCC	3 cut(s)	84, 324, 1136
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BalI	TGGCCA	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	884
BanI	GGYRCC	2 cut(s)	531, 588
BanII	GRGCYC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	97, 720
BccI	CCATC	4 cut(s)	15, 365, 819, 875
BciT130I	CCWGG	2 cut(s)	923, 1203
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	1152
BfaI	CTAG	3 cut(s)	416, 651, 833
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	5 cut(s)	108, 111, 144, 734, 808
BlsI	GCNGC	5 cut(s)	109, 112, 145, 735, 809
Bme1390I	CCNGG	2 cut(s)	923, 1203
Bme18I	GGWCC	3 cut(s)	84, 324, 1136
BmeT110I	CYCGRG	1 cut(s)	1155
BmgT120I	GGNCC	4 cut(s)	4, 84, 324, 1136
BmiI	GGNNCC	6 cut(s)	533, 590, 716, 886, 1168, 1192
BmrFI	CCNGG	2 cut(s)	923, 1203
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	637, 850, 994
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	861
BpmI	CTGGAG	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	475, 796
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	1152
BsaJI	CCNNGG	6 cut(s)	327, 559, 747, 805, 921, 1162
Bsc4I	CCNNNNNNNGG	5 cut(s)	333, 442, 1038, 1133, 1208
Bse118I	RCCGGY	2 cut(s)	47, 554
Bse1I	ACTGG	4 cut(s)	148, 590, 734, 979
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	2 cut(s)	923, 1203
BseDI	CCNNGG	6 cut(s)	327, 559, 747, 805, 921, 1162
BseGI	GGATG	3 cut(s)	652, 841, 985
BseLI	CCNNNNNNNGG	5 cut(s)	333, 442, 1038, 1133, 1208
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	4 cut(s)	148, 590, 734, 979
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	97, 720
BsgI	GTGCAG	1 cut(s)	1063
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	4 cut(s)	5, 273, 558, 810
BshNI	GGYRCC	2 cut(s)	531, 588
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	2 cut(s)	48, 555
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	5 cut(s)	333, 442, 1038, 1133, 1208
BsmAI	GTCTC	1 cut(s)	1152
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	4 cut(s)	5, 273, 558, 810
Bso31I	GGTCTC	1 cut(s)	1152
BsoBI	CYCGRG	1 cut(s)	1155
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	5 cut(s)	107, 144, 805, 807, 1217
BspANI	GGCC	4 cut(s)	5, 273, 558, 810
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	807
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	6 cut(s)	533, 590, 716, 886, 1168, 1192
BspPI	GGATC	6 cut(s)	89, 365, 759, 879, 892, 981
BspT107I	GGYRCC	2 cut(s)	531, 588
BspTNI	GGTCTC	1 cut(s)	1152
BsrDI	GCAATG	1 cut(s)	1024
BsrFI	RCCGGY	2 cut(s)	47, 554
BsrGI	TGTACA	1 cut(s)	164
BsrI	ACTGG	4 cut(s)	148, 590, 734, 979
BssAI	RCCGGY	2 cut(s)	47, 554
BssECI	CCNNGG	6 cut(s)	327, 559, 747, 805, 921, 1162
BssMI	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	3 cut(s)	327, 747, 1162
Bst2UI	CCWGG	2 cut(s)	923, 1203
BstACI	GRCGYC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	3 cut(s)	327, 559, 805
BstF5I	GGATG	3 cut(s)	652, 841, 985
BstFNI	CGCG	1 cut(s)	807
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	8 cut(s)	97, 195, 313, 360, 754, 887, 976, 1024
BstMAI	GTCTC	1 cut(s)	1152
BstMBI	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	907, 1023
BstNI	CCWGG	2 cut(s)	923, 1203
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	921, 1201
BstSFI	CTRYAG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	2 cut(s)	97, 720
BstV2I	GAAGAC	1 cut(s)	861
BstX2I	RGATCY	4 cut(s)	94, 357, 884, 973
BstYI	RGATCY	4 cut(s)	94, 357, 884, 973
BsuRI	GGCC	4 cut(s)	5, 273, 558, 810
BtgI	CCRYGG	3 cut(s)	327, 559, 805
BtsCI	GGATG	3 cut(s)	652, 841, 985
BtsIMutI	CAGTG	4 cut(s)	504, 634, 874, 986
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	2 cut(s)	47, 554
Cfr13I	GGNCC	4 cut(s)	4, 84, 324, 1136
Cfr42I	CCGCGG	1 cut(s)	808
CseI	GACGC	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	1201
Csp6I	GTAC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	674, 709
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	8 cut(s)	96, 194, 312, 359, 753, 886, 975, 1023
DpnII	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
DrdI	GACNNNNNNGTC	2 cut(s)	632, 863
DseDI	GACNNNNNNGTC	2 cut(s)	632, 863
EaeI	YGGCCR	3 cut(s)	271, 556, 808
Eco130I	CCWWGG	3 cut(s)	327, 747, 1162
Eco24I	GRGCYC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	1152
Eco47I	GGWCC	3 cut(s)	84, 324, 1136
Eco57I	CTGAAG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	1155
EcoRII	CCWGG	2 cut(s)	921, 1201
EcoT14I	CCWWGG	3 cut(s)	327, 747, 1162
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	3 cut(s)	327, 747, 1162
FaqI	GGGAC	1 cut(s)	464
FauNDI	CATATG	1 cut(s)	999
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	108, 111, 144, 734, 808
FokI	GGATG	3 cut(s)	659, 828, 972
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	5 cut(s)	108, 111, 144, 734, 808
FspBI	CTAG	3 cut(s)	416, 651, 833
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	5 cut(s)	108, 111, 144, 734, 808
GsuI	CTGGAG	1 cut(s)	962
HaeIII	GGCC	4 cut(s)	5, 273, 558, 810
HapII	CCGG	2 cut(s)	48, 555
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	5 cut(s)	73, 298, 425, 440, 1075
HpaII	CCGG	2 cut(s)	48, 555
HphI	GGTGA	2 cut(s)	377, 425
Hpy166II	GTNNAC	2 cut(s)	258, 583
Hpy188I	TCNGA	8 cut(s)	62, 94, 468, 496, 606, 816, 1074, 1090
Hpy188III	TCNNGA	5 cut(s)	308, 449, 574, 1157, 1179
Hpy8I	GTNNAC	2 cut(s)	258, 583
HpyAV	CCTTC	2 cut(s)	225, 781
HpyCH4V	TGCA	3 cut(s)	700, 941, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	907, 1023
HpyF3I	CTNAG	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	226
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	808
Kzo9I	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	2 cut(s)	97, 720
LweI	GCATC	3 cut(s)	637, 850, 994
MabI	ACCWGGT	1 cut(s)	1201
MaeI	CTAG	3 cut(s)	416, 651, 833
MaeIII	GTNAC	8 cut(s)	398, 654, 725, 823, 913, 947, 953, 1100
MalI	GATC	8 cut(s)	96, 194, 312, 359, 753, 886, 975, 1023
MboI	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
MboII	GAAGA	4 cut(s)	111, 180, 362, 866
MflI	RGATCY	4 cut(s)	94, 357, 884, 973
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	8 cut(s)	169, 290, 472, 691, 930, 1084, 1114, 1212
MluNI	TGGCCA	1 cut(s)	273
MmeI	TCCRAC	4 cut(s)	446, 545, 1168, 1189
MnlI	CCTC	7 cut(s)	97, 100, 216, 288, 368, 771, 1175
Mox20I	TGGCCA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	5 cut(s)	342, 510, 762, 795, 1222
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	107, 807
MspI	CCGG	2 cut(s)	48, 555
MspR9I	CCNGG	2 cut(s)	923, 1203
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	2 cut(s)	923, 1203
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	2 cut(s)	907, 1023
NcoI	CCATGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	999
NdeII	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
NlaIV	GGNNCC	6 cut(s)	533, 590, 716, 886, 1168, 1192
NmuCI	GTSAC	3 cut(s)	654, 823, 1100
NspI	RCATGY	1 cut(s)	914
PaeR7I	CTCGAG	1 cut(s)	1155
PagI	TCATGA	1 cut(s)	307
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	5 cut(s)	73, 298, 425, 440, 1075
PflMI	CCANNNNNTGG	4 cut(s)	333, 1038, 1133, 1208
PkrI	GCNGC	5 cut(s)	109, 112, 145, 735, 809
Psp6I	CCWGG	2 cut(s)	921, 1201
PspGI	CCWGG	2 cut(s)	921, 1201
PspN4I	GGNNCC	6 cut(s)	533, 590, 716, 886, 1168, 1192
PspPI	GGNCC	4 cut(s)	4, 84, 324, 1136
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	4 cut(s)	94, 357, 884, 973
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	808
SaqAI	TTAA	5 cut(s)	342, 510, 762, 795, 1222
SatI	GCNGC	5 cut(s)	108, 111, 144, 734, 808
Sau3AI	GATC	8 cut(s)	94, 192, 310, 357, 751, 884, 973, 1021
Sau96I	GGNCC	4 cut(s)	4, 84, 324, 1136
ScrFI	CCNGG	2 cut(s)	923, 1203
SduI	GDGCHC	1 cut(s)	181
SexAI	ACCWGGT	1 cut(s)	1201
SfaNI	GCATC	3 cut(s)	637, 850, 994
SfcI	CTRYAG	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	1155
Sfr303I	CCGCGG	1 cut(s)	808
SgrBI	CCGCGG	1 cut(s)	808
SinI	GGWCC	3 cut(s)	84, 324, 1136
SlaI	CTCGAG	1 cut(s)	1155
SmlI	CTYRAG	3 cut(s)	454, 775, 1155
SmoI	CTYRAG	3 cut(s)	454, 775, 1155
Sse9I	AATT	8 cut(s)	169, 290, 472, 691, 930, 1084, 1114, 1212
SsiI	CCGC	5 cut(s)	107, 144, 805, 807, 1217
SspMI	CTAG	3 cut(s)	416, 651, 833
StyD4I	CCNGG	2 cut(s)	921, 1201
StyI	CCWWGG	3 cut(s)	327, 747, 1162
TaqI	TCGA	5 cut(s)	76, 122, 191, 199, 1156
TasI	AATT	8 cut(s)	169, 290, 472, 691, 930, 1084, 1114, 1212
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	3 cut(s)	110, 146, 810
TfiI	GAWTC	5 cut(s)	73, 298, 425, 440, 1075
Tru1I	TTAA	5 cut(s)	342, 510, 762, 795, 1222
Tru9I	TTAA	5 cut(s)	342, 510, 762, 795, 1222
TscAI	CASTG	4 cut(s)	511, 634, 874, 986
TseFI	GTSAC	3 cut(s)	654, 823, 1100
TseI	GCWGC	2 cut(s)	110, 733
Tsp45I	GTSAC	3 cut(s)	654, 823, 1100
TspDTI	ATGAA	7 cut(s)	303, 363, 438, 453, 477, 800, 1121
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	4 cut(s)	511, 634, 874, 986
Van91I	CCANNNNNTGG	4 cut(s)	333, 1038, 1133, 1208
VpaK11BI	GGWCC	3 cut(s)	84, 324, 1136
XapI	RAATTY	1 cut(s)	930
XceI	RCATGY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	2 cut(s)	902, 1169
XhoI	CTCGAG	1 cut(s)	1155
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	3 cut(s)	416, 651, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.