Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

20036542 .. 20037806

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCGCCAGAGTCCCATTGCTACTACCCTTATGCCCCCTCTAGTCGCCCTCTTGTTCCTCCTCAACTGTCATCCAAGGCATCTTGTTCGATTCGCCACCAAACCCAAGTCGCCTACGTCGTCCGATATGCCCAAAACCGAATGTCGTCGGCGGTTATTTGCTCTCCCTCGGCCTCCTTTTCACCGCTTCCTTCTTCATGTGACTCTGATCCGCCATTCACAGAACTAGATCTTATTTCTCAAATTTCGGAGCTACTTGATTTGGAGAAGGCGACGTTTAAGATCAGTGATGAGTATGAGGTGAGTTTCAGAAAGATCAGTGCCCTTAGTGGAATTTTTGTGTGCTTGAGGGAGGGAGGCCTTGAGGTATTCTTGAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

5.27

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	152, 185, 212
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	243, 333
AcyI	GRCGYC	1 cut(s)	5
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	171, 358
ApoI	RAATTY	2 cut(s)	243, 333
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	174, 313
BaeGI	GKGCMC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BfaI	CTAG	2 cut(s)	42, 227
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	367, 383
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	75, 168
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	75, 168
BseGI	GGATG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	173, 360
BshNI	GGYRCC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	173, 360
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	4 cut(s)	208, 229, 282, 315
BspACI	CCGC	3 cut(s)	152, 185, 212
BspANI	GGCC	2 cut(s)	173, 360
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	75, 168
BssMI	GATC	4 cut(s)	208, 229, 282, 315
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	211, 232, 285, 318
BstMBI	GATC	4 cut(s)	208, 229, 282, 315
BstSLI	GKGCMC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	173, 360
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	292, 325
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	3 cut(s)	173, 253, 360
CviKI_1	RGCY	3 cut(s)	173, 253, 360
DdeI	CTNAG	1 cut(s)	326
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	210, 231, 284, 317
DpnII	GATC	4 cut(s)	208, 229, 282, 315
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	75
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	201
FaiI	YATR	4 cut(s)	33, 129, 199, 297
FatI	CATG	1 cut(s)	197
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	2 cut(s)	42, 227
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	173, 360
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	11, 91, 203
HphI	GGTGA	2 cut(s)	174, 313
Hpy188I	TCNGA	4 cut(s)	125, 208, 250, 311
Hpy188III	TCNNGA	1 cut(s)	373
Hpy99I	CGWCG	3 cut(s)	122, 151, 277
HpyAV	CCTTC	2 cut(s)	201, 262
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	2 cut(s)	117, 275
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	2 cut(s)	117, 275
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	208, 229, 282, 315
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	1 cut(s)	21
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	2 cut(s)	42, 227
MaeII	ACGT	2 cut(s)	117, 275
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	4 cut(s)	210, 231, 284, 317
MboI	GATC	4 cut(s)	208, 229, 282, 315
MboII	GAAGA	1 cut(s)	186
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	243, 333, 379
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	20, 197
MseI	TTAA	1 cut(s)	279
MunI	CAATTG	1 cut(s)	379
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	4 cut(s)	208, 229, 282, 315
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	19, 197
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	19, 197
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	208, 229, 282, 315
SchI	GAGTC	2 cut(s)	20, 197
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	120, 255, 278, 303, 369
SfaNI	GCATC	1 cut(s)	89
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	3 cut(s)	346, 362, 373
SmoI	CTYRAG	3 cut(s)	346, 362, 373
Sse9I	AATT	3 cut(s)	243, 333, 379
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	152, 185, 212
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	42, 227
StuI	AGGCCT	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	2 cut(s)	120, 278
TaqI	TCGA	1 cut(s)	89
TasI	AATT	3 cut(s)	243, 333, 379
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	292, 325
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	292, 325
XapI	RAATTY	2 cut(s)	243, 333
XspI	CTAG	2 cut(s)	42, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.