Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338957.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 351

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 163 bp

atgattcttcaggctcatgatcaagcaatcagatctatggtctggagtcataatgaaaattggatggtctctggtgatgatggaggatcaataaagtattggcagaccaacatgaataatgtgaaggccaataaatctgctcacaaagaatctgttcaggact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

54

Amino Acids

6.19

Weight (kDa)

6.24

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	86
BccI	CCATC	2 cut(s)	58, 74
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	73
BseGI	GGATG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	19, 32, 86
BspANI	GGCC	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	16
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	73
BssMI	GATC	3 cut(s)	19, 32, 86
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	3 cut(s)	22, 35, 89
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	19, 32, 86
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	16
CviAII	CATG	2 cut(s)	17, 112
CviJI	RGCY	2 cut(s)	14, 128
CviKI_1	RGCY	2 cut(s)	14, 128
DpnI	GATC	3 cut(s)	21, 34, 88
DpnII	GATC	3 cut(s)	19, 32, 86
Eco31I	GGTCTC	1 cut(s)	73
FaeI	CATG	2 cut(s)	20, 115
FaiI	YATR	4 cut(s)	18, 38, 51, 113
FatI	CATG	2 cut(s)	16, 111
FbaI	TGATCA	1 cut(s)	19
FokI	GGATG	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	20, 115
HinfI	GANTC	3 cut(s)	4, 46, 149
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	3 cut(s)	17, 43, 158
HpyAV	CCTTC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	20, 115
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 32, 86
LpnPI	CCDG	3 cut(s)	28, 57, 143
MalI	GATC	3 cut(s)	21, 34, 88
MboI	GATC	3 cut(s)	19, 32, 86
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	153
NdeII	GATC	3 cut(s)	19, 32, 86
NlaIII	CATG	2 cut(s)	20, 115
PagI	TCATGA	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	4, 149
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	32
Sau3AI	GATC	3 cut(s)	19, 32, 86
SchI	GAGTC	1 cut(s)	55
SgeI	CNNG	6 cut(s)	23, 29, 35, 55, 84, 124
Sse9I	AATT	1 cut(s)	58
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	4, 149
TspDTI	ATGAA	2 cut(s)	69, 128
XmnI	GAANNNNTTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.