Rmu_sc0011602.1_g000010

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011602.1
Physical Location & Seq
Forward (+)
47979 .. 49246
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011602.1_g000010.1.cds

Sequence Viewer

Length: 1077 bp
atggccccagaccactcctacgcccagaccaccacagttgattacaccattaacaacccatttgctgcccagtttgtgcgctcttgcgcaaattacagagcccgtgcttcttcgatcaatcgagttttatggacaccttctgggaggcgtcttatcacaggctctcaaaacggggagttcactctctggaatggtgagtcattcaaacatgaattgaggattcaggctcatgatcacgcaatcaggtccatggcgtggagttttgatgatcaagattggatctctggtgatgatgggggcacaatcaggtattggaagagtaacatgattaatgtgctagtcaatgaatctgctcaccatgaatcggttcgggacctgagcttctgtcggactaatttgaagttttgttcatgttccgatgatactacggttaaaatctgggattttgaacggtgccaacaggagaagacattgaccggccatggttggaatgtgacgagtgttgactggcaccccacaaactctctgatagcttcgggtgggtgggacagtgttgtcaaactgtgggatgctaggtcagggagagaactctgttctttttacgagcacaaaaattgggtgcattctgtcaagtggaaccgaaatggtaactggctgctgactgcttccaaggatcaagtcattaagctttacgacttgagggctatgaaggaacttagatctttccgcggccatcagaacaaagtgactgctctagcttggcatcctcttaccgaagattattttgtcagtgggagtagtgatggatccattttccattggcttgttgggcatcatactccccagtggcatcctattggtcatatgatttgtagtggtagcaatgatcgcaccaccaagttttggtgcagaacagcagataaatctaaattcagtcagaatcaaccttgtcacatgaacagtaatgttccttttccagttcatggaccaccaactattgctactactcgagaccaaggaaccattggttcaggaggtgtaggaaccattatacctggtgttggaattgcggtttaa

Protein Analysis

358

Amino Acids

40.55

Weight (kDa)

8.35

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
Acc16I TGCGCA 1 cut(s) 88
AccB1I GGYRCC 2 cut(s) 453, 510
AccB7I CCANNNNNTGG 3 cut(s) 255, 903, 983
AccII CGCG 1 cut(s) 729
AciI CCGC 3 cut(s) 727, 729, 1070
AclWI GGATC 4 cut(s) 287, 681, 801, 814
AcoI YGGCCR 2 cut(s) 478, 730
AcsI RAATTY 1 cut(s) 929
AcyI GRCGYC 1 cut(s) 148
AfiI CCNNNNNNNGG 5 cut(s) 255, 364, 903, 983, 1061
AgsI TTSAA 3 cut(s) 205, 400, 449
AjnI CCWGG 1 cut(s) 1054
AluBI AGCT 4 cut(s) 381, 533, 688, 758
AluI AGCT 4 cut(s) 381, 533, 688, 758
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 1005
AlwI GGATC 4 cut(s) 287, 681, 801, 814
Ama87I CYCGRG 1 cut(s) 1008
AoxI GGCC 3 cut(s) 3, 478, 730
ApeKI GCWGC 2 cut(s) 65, 655
ApoI RAATTY 1 cut(s) 929
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 2 cut(s) 81, 89
AspS9I GGNCC 4 cut(s) 4, 246, 373, 986
AsuHPI GGTGA 3 cut(s) 206, 299, 347
AvaI CYCGRG 1 cut(s) 1008
AvaII GGWCC 3 cut(s) 246, 373, 986
BaeGI GKGCMC 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BamHI GGATCC 1 cut(s) 806
BanI GGYRCC 2 cut(s) 453, 510
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 2 cut(s) 52, 642
BccI CCATC 3 cut(s) 287, 741, 797
BciT130I CCWGG 1 cut(s) 1056
BclI TGATCA 2 cut(s) 232, 268
BcoDI GTCTC 1 cut(s) 1005
BfaI CTAG 3 cut(s) 338, 573, 755
BglII AGATCT 1 cut(s) 719
BisI GCNGC 3 cut(s) 66, 656, 730
BlsI GCNGC 3 cut(s) 67, 657, 731
Bme1390I CCNGG 1 cut(s) 1056
Bme18I GGWCC 3 cut(s) 246, 373, 986
BmeT110I CYCGRG 1 cut(s) 1008
BmgT120I GGNCC 4 cut(s) 4, 246, 373, 986
BmiI GGNNCC 8 cut(s) 6, 374, 455, 512, 638, 808, 1021, 1045
BmrFI CCNGG 1 cut(s) 1056
BmrI ACTGGG 2 cut(s) 64, 838
BmsI GCATC 4 cut(s) 559, 772, 841, 859
BmuI ACTGGG 2 cut(s) 64, 838
BpiI GAAGAC 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 718
BsaHI GRCGYC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 1005
BsaJI CCNNGG 5 cut(s) 249, 481, 669, 727, 1015
Bsc4I CCNNNNNNNGG 5 cut(s) 255, 364, 903, 983, 1061
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 5 cut(s) 70, 512, 656, 844, 977
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 1 cut(s) 1056
BseDI CCNNGG 5 cut(s) 249, 481, 669, 727, 1015
BseGI GGATG 3 cut(s) 574, 763, 850
BseLI CCNNNNNNNGG 5 cut(s) 255, 364, 903, 983, 1061
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 5 cut(s) 70, 512, 656, 844, 977
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 52, 642
BsgI GTGCAG 1 cut(s) 928
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 3 cut(s) 5, 480, 732
BshNI GGYRCC 2 cut(s) 453, 510
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 1008
BsiSI CCGG 1 cut(s) 477
BslFI GGGAC 2 cut(s) 386, 560
BslI CCNNNNNNNGG 5 cut(s) 255, 364, 903, 983, 1061
BsmAI GTCTC 1 cut(s) 1005
BsmFI GGGAC 2 cut(s) 386, 560
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 3 cut(s) 5, 480, 732
Bso31I GGTCTC 1 cut(s) 1005
BsoBI CYCGRG 1 cut(s) 1008
Bsp1286I GDGCHC 3 cut(s) 103, 302, 609
Bsp143I GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
Bsp19I CCATGG 2 cut(s) 249, 481
BspACI CCGC 3 cut(s) 727, 729, 1070
BspANI GGCC 3 cut(s) 5, 480, 732
BspCNI CTCAG 1 cut(s) 369
BspFNI CGCG 1 cut(s) 729
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 8 cut(s) 6, 374, 455, 512, 638, 808, 1021, 1045
BspPI GGATC 4 cut(s) 287, 681, 801, 814
BspT107I GGYRCC 2 cut(s) 453, 510
BspTNI GGTCTC 1 cut(s) 1005
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 5 cut(s) 70, 512, 656, 844, 977
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 5 cut(s) 249, 481, 669, 727, 1015
BssMI GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
BssNI GRCGYC 1 cut(s) 148
BssT1I CCWWGG 4 cut(s) 249, 481, 669, 1015
Bst2UI CCWGG 1 cut(s) 1056
Bst4CI ACNGT 6 cut(s) 37, 430, 453, 551, 564, 962
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 377, 716
BstDSI CCRYGG 3 cut(s) 249, 481, 727
BstF5I GGATG 3 cut(s) 574, 763, 850
BstFNI CGCG 1 cut(s) 729
BstHHI GCGC 2 cut(s) 81, 89
BstKTI GATC 8 cut(s) 117, 235, 271, 282, 676, 722, 809, 889
BstMAI GTCTC 1 cut(s) 1005
BstMBI GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
BstMWI GCNNNNNNNGC 2 cut(s) 829, 888
BstNI CCWGG 1 cut(s) 1056
BstSCI CCNGG 1 cut(s) 1054
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 52, 642
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 3 cut(s) 279, 719, 806
BstYI RGATCY 3 cut(s) 279, 719, 806
BsuRI GGCC 3 cut(s) 5, 480, 732
BtgI CCRYGG 3 cut(s) 249, 481, 727
BtsCI GGATG 3 cut(s) 574, 763, 850
BtsIMutI CAGTG 3 cut(s) 556, 796, 851
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 81, 89
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 4 cut(s) 4, 246, 373, 986
Cfr42I CCGCGG 1 cut(s) 730
CseI GACGC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 1054
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 9 cut(s) 209, 230, 250, 325, 359, 411, 482, 955, 983
DdeI CTNAG 2 cut(s) 377, 716
DpnI GATC 8 cut(s) 116, 234, 270, 281, 675, 721, 808, 888
DpnII GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
EaeI YGGCCR 2 cut(s) 478, 730
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 4 cut(s) 249, 481, 669, 1015
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 1005
Eco47I GGWCC 3 cut(s) 246, 373, 986
Eco88I CYCGRG 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 1054
EcoT14I CCWWGG 4 cut(s) 249, 481, 669, 1015
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 4 cut(s) 249, 481, 669, 1015
FaeI CATG 9 cut(s) 212, 233, 253, 328, 362, 414, 485, 958, 986
FaqI GGGAC 2 cut(s) 386, 560
FatI CATG 9 cut(s) 208, 229, 249, 324, 358, 410, 481, 954, 982
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 2 cut(s) 232, 268
Fnu4HI GCNGC 3 cut(s) 66, 656, 730
FokI GGATG 3 cut(s) 581, 750, 837
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 66, 656, 730
FspBI CTAG 3 cut(s) 338, 573, 755
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 2 cut(s) 80, 88
GluI GCNGC 3 cut(s) 66, 656, 730
HaeIII GGCC 3 cut(s) 5, 480, 732
HapII CCGG 1 cut(s) 477
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 81, 89
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 9 cut(s) 212, 233, 253, 328, 362, 414, 485, 958, 986
Hin6I GCGC 2 cut(s) 79, 87
HinP1I GCGC 2 cut(s) 79, 87
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 5 cut(s) 197, 220, 347, 362, 940
HpaII CCGG 1 cut(s) 477
HphI GGTGA 3 cut(s) 206, 299, 347
Hpy166II GTNNAC 2 cut(s) 180, 505
Hpy188I TCNGA 5 cut(s) 390, 418, 528, 738, 939
Hpy188III TCNNGA 6 cut(s) 187, 230, 272, 371, 1010, 1032
Hpy8I GTNNAC 2 cut(s) 180, 505
HpyAV CCTTC 2 cut(s) 147, 703
HpyCH4III ACNGT 6 cut(s) 37, 430, 453, 551, 564, 962
HpyCH4V TGCA 2 cut(s) 622, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 829, 888
HpyF3I CTNAG 2 cut(s) 377, 716
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 9 cut(s) 212, 233, 253, 328, 362, 414, 485, 958, 986
HspAI GCGC 2 cut(s) 79, 87
Ksp22I TGATCA 2 cut(s) 232, 268
KspI CCGCGG 1 cut(s) 730
Kzo9I GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
Lsp1109I GCAGC 2 cut(s) 52, 642
LweI GCATC 4 cut(s) 559, 772, 841, 859
MabI ACCWGGT 1 cut(s) 1054
MaeI CTAG 3 cut(s) 338, 573, 755
MaeIII GTNAC 5 cut(s) 320, 493, 647, 745, 950
MalI GATC 8 cut(s) 116, 234, 270, 281, 675, 721, 808, 888
MboI GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
MboII GAAGA 4 cut(s) 102, 328, 478, 788
MflI RGATCY 3 cut(s) 279, 719, 806
MhlI GDGCHC 3 cut(s) 103, 302, 609
MluCI AATT 6 cut(s) 91, 212, 394, 613, 929, 1065
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 3 cut(s) 368, 467, 1042
MnlI CCTC 5 cut(s) 138, 210, 693, 777, 1028
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 5 cut(s) 51, 330, 432, 684, 1075
MspA1I CMGCKG 1 cut(s) 729
MspI CCGG 1 cut(s) 477
MspR9I CCNGG 1 cut(s) 1056
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 1056
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 829, 888
NcoI CCATGG 2 cut(s) 249, 481
NdeI CATATG 1 cut(s) 864
NdeII GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
NlaIII CATG 9 cut(s) 212, 233, 253, 328, 362, 414, 485, 958, 986
NlaIV GGNNCC 8 cut(s) 6, 374, 455, 512, 638, 808, 1021, 1045
NmuCI GTSAC 3 cut(s) 493, 745, 950
NsbI TGCGCA 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 1008
PagI TCATGA 1 cut(s) 229
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 4 cut(s) 220, 347, 362, 940
PflMI CCANNNNNTGG 3 cut(s) 255, 903, 983
PkrI GCNGC 3 cut(s) 67, 657, 731
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 373
PshBI ATTAAT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 1054
PspGI CCWGG 1 cut(s) 1054
PspN4I GGNNCC 8 cut(s) 6, 374, 455, 512, 638, 808, 1021, 1045
PspPI GGNCC 4 cut(s) 4, 246, 373, 986
PspPPI RGGWCCY 1 cut(s) 373
PsuI RGATCY 3 cut(s) 279, 719, 806
SacII CCGCGG 1 cut(s) 730
SaqAI TTAA 5 cut(s) 51, 330, 432, 684, 1075
SatI GCNGC 3 cut(s) 66, 656, 730
Sau3AI GATC 8 cut(s) 114, 232, 268, 279, 673, 719, 806, 886
Sau96I GGNCC 4 cut(s) 4, 246, 373, 986
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 1056
SduI GDGCHC 3 cut(s) 103, 302, 609
SexAI ACCWGGT 1 cut(s) 1054
SfaNI GCATC 4 cut(s) 559, 772, 841, 859
Sfr274I CTCGAG 1 cut(s) 1008
Sfr303I CCGCGG 1 cut(s) 730
SgrBI CCGCGG 1 cut(s) 730
SinI GGWCC 3 cut(s) 246, 373, 986
SlaI CTCGAG 1 cut(s) 1008
SmlI CTYRAG 2 cut(s) 697, 1008
SmoI CTYRAG 2 cut(s) 697, 1008
Sse9I AATT 6 cut(s) 91, 212, 394, 613, 929, 1065
SsiI CCGC 3 cut(s) 727, 729, 1070
SspMI CTAG 3 cut(s) 338, 573, 755
StyD4I CCNGG 1 cut(s) 1054
StyI CCWWGG 4 cut(s) 249, 481, 669, 1015
TaaI ACNGT 6 cut(s) 37, 430, 453, 551, 564, 962
TaqI TCGA 3 cut(s) 113, 121, 1009
TasI AATT 6 cut(s) 91, 212, 394, 613, 929, 1065
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 4 cut(s) 220, 347, 362, 940
Tru1I TTAA 5 cut(s) 51, 330, 432, 684, 1075
Tru9I TTAA 5 cut(s) 51, 330, 432, 684, 1075
TscAI CASTG 3 cut(s) 556, 796, 851
TseFI GTSAC 3 cut(s) 493, 745, 950
TseI GCWGC 2 cut(s) 65, 655
Tsp45I GTSAC 3 cut(s) 493, 745, 950
TspDTI ATGAA 7 cut(s) 225, 360, 375, 399, 722, 971, 971
TspRI CASTG 3 cut(s) 556, 796, 851
Van91I CCANNNNNTGG 3 cut(s) 255, 903, 983
VpaK11BI GGWCC 3 cut(s) 246, 373, 986
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 2 cut(s) 824, 1022
XhoI CTCGAG 1 cut(s) 1008
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 3 cut(s) 338, 573, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.