Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

58605651 .. 58616731

Gene Structure 11081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGATGTACCCTGATCCTCAACAACAGCAGCAGCAACACCAACAGCAGCAGCAACACCAACAACAACAGCAGCAGCAACAACAACAACACTATCACCAGCAGCAGCAGCAACACCACCAACACCAGCAGCAACACCATCAGCATCAGCAGCAGCAGCAGCAAGGTGGAGACTTTCACAGGGGCCCACCGCCGCAGCAGCCGCCGCCGATGATGCGTCAGCCGTCTGCTTCTTCTACTAACATGGCTCCGGATTATCACCACCCCTCGGCCCCCGGTCCTCCTGTTCCGCCTTATGATGTTCATGGTGATGGTTTTGGTGCAAAGAGGAACAGAAAGCAGACTCAGAGAAGGGCAGTTGATTACACTAGCACTGTCGTGCGGTATACACAGACTCGAATGTGGCAGCGGGATGCGAGGGATAGGACAGTGTTGCAACCTACACCAGCAGCTGCAATTGACATGTTGCCGACAGTTGCCTATTCAGATAACCCATCTACGGGCTTTGCTGCAAAGTTTGTGCATACTTCCACAAACAAAGTCCGTACTTCAATTAATCGGGTTCTGTGGACTCCTCCTGGGAGGCGTCTTATTACAGGCTCTCAAAATGGGGAATTCACTCTTTGGAATGGCCAATCATTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGATCTATGGTCTGGAGTCATAATGAAAATTGGATGGTCTCTGGCGATGATGGAGGATCAATAAAGTATTGGCAGACCAACATGAATAATGTGAAGGCCAATAAATCTGCTCACAAAGAATCTGTTCAGGACTTAAGCTTCTGTAAGACTGACTTGAAGTTCTGTTCCTGTTCGAATGATACTTCTGTTAAAATATGGGATTTTGCACGGTGCCAAGAAGAGCGCACATTGACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCTCTACTAGCTTCAGGTGGGAAAGACCAGCTTGTCAAACTTTGGGATGCTAAGTCAGGGCGAGAACTATGTTCATTTCATGGTCACAAAAATTTGGTGCAATCTGTTAAATGGAACCAAAATGGCAACTGGCTGCTAACTGCTTCTAAGGATCAAGTCATAAAGCTTTACGACATAAGGGCTATGAAGGAGCTTGAATCTTTCCGTGGGCATCGGAAGGAAGTGACTGCTCTGGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTTCTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAATTGCTAATGCACACGATAACAGTGTGTGGGATCTCCAATGGCACCCTATTGGCTATATTCTTTGCAGTGGTAGCAATGATCACACAACAAAGTTTTGGTGCAGAAACAGGCCAGGAGACACTGGTCGCGATAAATTTAACATCAATCAGATTCAAGGTTATGGTGATCAAAACTCTGCTTTTGCTGGTCGCATGACGGGTAATTTTCCATTACACGATGGACCACCAACTCCAGGACCATTTACTCCCGGGGGAACTCGAAATGAAGGAACCATTCCAGGGGTTGGAGTAGCTATGCCGCTAGCCATACCATCCCTTGACACATCTATTCAGGGAGAACAACAGCAACCTCATGCACATTCAATGCCTTTAGGAGCTCCTCCTCTCCCACCTGGTCCACATCCTTCTCTTCTTGCTGCAAATCAGCAGCAACCATATCATCAAAATGCGCAACAGCAACATCAGCAACACCAAGGTCACCCACAACAAATGCCCCCTTTGCCTATGCCACCTCCAAATATGCCACAGCTACAGCCTCCATCCCATTTACCCTTGCTGCCGCATCCTCATTTACGTCCACCACCCCAAATGCCCCCACTCGGTATGCCATCTTCAGTGTCCGGATCTTTGCCTATGCCTTCATCAGTTCCAACATCACTTTCAATGCCAATGGGCATGCAAGGTACAATGAATCAGATGGTTCATCAATTGCCGCAAGGTCATTATATGGGCATGAACCCACCTCCACCTGCTGGAGGTTTCCCAAATGGTATGCCGAACATGCAGGGCCCATCTAATGCAAGTGGGGGGCAAATGTATTCTCATGCTGGCACCTTCAATCGTGCACAATCTGGACAAATGCCAATGCTACCGGGGTATAATCCCTACCAGCCCAGGGGTCAAACCGGTATGCCTCAGCCTCCACCAGGGCCACCACCACATGGGCAAACACCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

749

Amino Acids

83.6

Weight (kDa)

8.79

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	132 - 419	4e-14	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	166 - 344	3.5e-25	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	174 - 252	6.3e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	178 - 329	9.8e-23	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	180 - 355	3.5e-27	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	180 - 256	8e-08	WDR5 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	181 - 269	2.5e-09	IFT140 first beta-propeller
WD40_Gbeta	PF25391	184 - 387	4.5e-20	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	186 - 345	1.6e-15	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	192 - 258	2.1e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	193 - 386	2.6e-31	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	213 - 318	8.2e-07	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	217 - 250	1e-05	WD domain, G-beta repeat
EIF3I	PF24805	218 - 300	1.8e-08	EIF3I
Beta-prop_TEP1_2nd	PF25047	227 - 397	9.8e-15	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	246 - 361	2.2e-23	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	246 - 336	1.1e-09	WDR3 second beta-propeller domain
WDR55	PF24796	255 - 419	3e-16	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	259 - 420	1.8e-18	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	275 - 440	3.8e-20	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	279 - 367	5.7e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st	PF25173	298 - 419	2.4e-27	WDR3 first beta-propeller domain
Beta-prop_IFT140_1st	PF23383	298 - 373	5e-06	IFT140 first beta-propeller
WD40	PF00400	299 - 335	4.4e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	301 - 383	1.2e-11	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	302 - 461	8.7e-14	EIF3I
Beta-prop_WDR3_2nd	PF25172	303 - 422	8.3e-14	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	303 - 409	4e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin	PF25460	309 - 419	1.8e-06	Aladin seven-bladed propeller
Beta-prop_WDR19_1st	PF23389	313 - 459	9.4e-08	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	330 - 463	1.4e-10	WDR36/Utp21 first beta-propeller
WD40	PF00400	340 - 377	5.9e-08	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	341 - 464	4.9e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	346 - 463	1.5e-20	WDR5 beta-propeller domain
ANAPC4_WD40	PF12894	347 - 400	9.4e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_THOC3	PF25174	348 - 466	1.3e-22	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	348 - 416	2.2e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	352 - 429	2.2e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	377 - 462	2.2e-10	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	382 - 462	2.6e-10	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2044
AasI	GACNNNNNNGTC	1 cut(s)	989
Acc16I	TGCGCA	1 cut(s)	1737
Acc36I	ACCTGC	1 cut(s)	2044
AccB1I	GGYRCC	4 cut(s)	888, 945, 1329, 2117
AccB7I	CCANNNNNTGG	3 cut(s)	1571, 2039, 2228
AccI	GTMKAC	1 cut(s)	383
AccII	CGCG	1 cut(s)	1416
AccIII	TCCGGA	2 cut(s)	247, 1907
AclWI	GGATC	7 cut(s)	8, 742, 1116, 1236, 1249, 1326, 1918
AcoI	YGGCCR	2 cut(s)	628, 913
AcsI	RAATTY	3 cut(s)	611, 1048, 1421
AcuI	CTGAAG	3 cut(s)	641, 954, 1884
AcyI	GRCGYC	1 cut(s)	583
AfaI	GTAC	3 cut(s)	8, 544, 1972
AflII	CTTAAG	1 cut(s)	811
AflIII	ACRYGT	1 cut(s)	459
AgeI	ACCGGT	1 cut(s)	2192
AgsI	TTSAA	9 cut(s)	549, 647, 835, 1154, 1286, 1442, 1650, 1950, 2125
AjnI	CCWGG	8 cut(s)	574, 1278, 1399, 1519, 1564, 1678, 2180, 2212
AjuI	GAANNNNNNNTTGG	2 cut(s)	1930, 1962
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	9 cut(s)	449, 816, 968, 988, 1123, 1150, 1580, 1664, 1816
AluI	AGCT	9 cut(s)	449, 816, 968, 988, 1123, 1150, 1580, 1664, 1816
Alw21I	GWGCWC	2 cut(s)	1666, 2134
Alw26I	GTCTC	4 cut(s)	162, 721, 963, 1398
Alw44I	GTGCAC	1 cut(s)	2130
AlwI	GGATC	7 cut(s)	8, 742, 1116, 1236, 1249, 1326, 1918
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	1535
Aor13HI	TCCGGA	2 cut(s)	247, 1907
AoxI	GGCC	8 cut(s)	181, 267, 628, 774, 913, 1397, 2074, 2216
ApaI	GGGCCC	2 cut(s)	185, 2078
ApaLI	GTGCAC	1 cut(s)	2130
ApoI	RAATTY	3 cut(s)	611, 1048, 1421
AseI	ATTAAT	1 cut(s)	552
AsiGI	ACCGGT	1 cut(s)	2192
Asp700I	GAANNNNTTC	2 cut(s)	651, 801
AspLEI	GCGC	2 cut(s)	903, 1738
AsuC2I	CCSGG	4 cut(s)	273, 1536, 1537, 2160
AsuHPI	GGTGA	5 cut(s)	86, 248, 317, 1463, 1757
AsuII	TTCGAA	1 cut(s)	851
AsuNHI	GCTAGC	1 cut(s)	1588
AvaI	CYCGRG	1 cut(s)	1535
AvaII	GGWCC	4 cut(s)	275, 1508, 1523, 1682
BaeGI	GKGCMC	3 cut(s)	185, 2078, 2134
BaeI	ACNNNNGTAYC	2 cut(s)	849, 882
BalI	TGGCCA	2 cut(s)	630, 915
BamHI	GGATCC	1 cut(s)	1241
BanI	GGYRCC	4 cut(s)	888, 945, 1329, 2117
BanII	GRGCYC	3 cut(s)	185, 1666, 2078
BarI	GAAGNNNNNNTAC	2 cut(s)	1882, 1914
Bbv12I	GWGCWC	2 cut(s)	1666, 2134
BbvCI	CCTCAGC	1 cut(s)	2202
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	8 cut(s)	576, 1280, 1401, 1521, 1566, 1680, 2182, 2214
BclI	TGATCA	3 cut(s)	667, 1366, 1453
BcnI	CCSGG	4 cut(s)	273, 1536, 1537, 2160
BcoDI	GTCTC	4 cut(s)	162, 721, 963, 1398
BfaI	CTAG	3 cut(s)	366, 965, 1589
BfmI	CTRYAG	1 cut(s)	1817
BfrI	CTTAAG	1 cut(s)	811
BfuAI	ACCTGC	1 cut(s)	2044
BglII	AGATCT	1 cut(s)	680
Bme18I	GGWCC	4 cut(s)	275, 1508, 1523, 1682
BmeT110I	CYCGRG	1 cut(s)	1535
BmsI	GCATC	7 cut(s)	151, 201, 400, 994, 1177, 1207, 1858
BmtI	GCTAGC	1 cut(s)	1592
BoxI	GACNNNNGTC	1 cut(s)	1410
BpmI	CTGGAG	3 cut(s)	712, 1503, 2061
Bpu10I	CCTNAGC	1 cut(s)	2202
Bpu14I	TTCGAA	1 cut(s)	851
BpuMI	CCSGG	4 cut(s)	273, 1536, 1537, 2160
BsaHI	GRCGYC	1 cut(s)	583
BsaI	GGTCTC	1 cut(s)	721
BsaWI	WCCGGW	3 cut(s)	247, 1907, 2192
Bse118I	RCCGGY	1 cut(s)	2192
Bse1I	ACTGG	4 cut(s)	916, 947, 1091, 1414
Bse3DI	GCAATG	1 cut(s)	1369
BseAI	TCCGGA	2 cut(s)	247, 1907
BseBI	CCWGG	8 cut(s)	576, 1280, 1401, 1521, 1566, 1680, 2182, 2214
BseGI	GGATG	9 cut(s)	415, 717, 931, 1009, 1198, 1598, 1687, 1826, 1849
BseMI	GCAATG	1 cut(s)	1369
BseMII	CTCAG	2 cut(s)	356, 2216
BseNI	ACTGG	4 cut(s)	916, 947, 1091, 1414
BseRI	GAGGAG	3 cut(s)	561, 1656, 1659
BseSI	GKGCMC	3 cut(s)	185, 2078, 2134
BsgI	GTGCAG	1 cut(s)	1408
Bsh1236I	CGCG	1 cut(s)	1416
BshFI	GGCC	8 cut(s)	183, 269, 630, 776, 915, 1399, 2076, 2218
BshNI	GGYRCC	4 cut(s)	888, 945, 1329, 2117
BshTI	ACCGGT	1 cut(s)	2192
BsiHKAI	GWGCWC	2 cut(s)	1666, 2134
BsiHKCI	CYCGRG	1 cut(s)	1535
BsiSI	CCGG	6 cut(s)	248, 273, 1536, 1908, 2159, 2193
BsmAI	GTCTC	4 cut(s)	162, 721, 963, 1398
BsnI	GGCC	8 cut(s)	183, 269, 630, 776, 915, 1399, 2076, 2218
Bso31I	GGTCTC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	1535
Bsp119I	TTCGAA	1 cut(s)	851
Bsp120I	GGGCCC	2 cut(s)	181, 2074
Bsp1286I	GDGCHC	4 cut(s)	185, 1666, 2078, 2134
Bsp13I	TCCGGA	2 cut(s)	247, 1907
Bsp19I	CCATGG	1 cut(s)	916
Bsp68I	TCGCGA	1 cut(s)	1416
BspANI	GGCC	8 cut(s)	183, 269, 630, 776, 915, 1399, 2076, 2218
BspCNI	CTCAG	2 cut(s)	355, 2215
BspEI	TCCGGA	2 cut(s)	247, 1907
BspFNI	CGCG	1 cut(s)	1416
BspHI	TCATGA	2 cut(s)	664, 1207
BspMI	ACCTGC	1 cut(s)	2044
BspOI	GCTAGC	1 cut(s)	1592
BspPI	GGATC	7 cut(s)	8, 742, 1116, 1236, 1249, 1326, 1918
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	851
BspT107I	GGYRCC	4 cut(s)	888, 945, 1329, 2117
BspTI	CTTAAG	1 cut(s)	811
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	1369
BsrFI	RCCGGY	1 cut(s)	2192
BsrI	ACTGG	4 cut(s)	916, 947, 1091, 1414
BssAI	RCCGGY	1 cut(s)	2192
BssNAI	GTATAC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	583
BssT1I	CCWWGG	2 cut(s)	916, 1759
Bst1107I	GTATAC	1 cut(s)	384
Bst2UI	CCWGG	8 cut(s)	576, 1280, 1401, 1521, 1566, 1680, 2182, 2214
Bst4CI	ACNGT	5 cut(s)	373, 427, 472, 888, 1310
Bst6I	CTCTTC	3 cut(s)	891, 926, 1701
BstACI	GRCGYC	1 cut(s)	583
BstAFI	CTTAAG	1 cut(s)	811
BstBI	TTCGAA	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	1590, 1964, 2116
BstDEI	CTNAG	4 cut(s)	342, 1008, 1104, 2202
BstDSI	CCRYGG	2 cut(s)	916, 1162
BstEII	GGTNACC	1 cut(s)	1763
BstENI	CCTNNNNNAGG	2 cut(s)	2040, 2211
BstF5I	GGATG	9 cut(s)	415, 717, 931, 1009, 1198, 1598, 1687, 1826, 1849
BstFNI	CGCG	1 cut(s)	1416
BstHHI	GCGC	2 cut(s)	903, 1738
BstMAI	GTCTC	4 cut(s)	162, 721, 963, 1398
BstNI	CCWGG	8 cut(s)	576, 1280, 1401, 1521, 1566, 1680, 2182, 2214
BstNSI	RCATGY	3 cut(s)	463, 1966, 2071
BstPAI	GACNNNNGTC	1 cut(s)	1410
BstPI	GGTNACC	1 cut(s)	1763
BstSFI	CTRYAG	1 cut(s)	1817
BstSLI	GKGCMC	3 cut(s)	185, 2078, 2134
BstUI	CGCG	1 cut(s)	1416
BstX2I	RGATCY	4 cut(s)	680, 1241, 1318, 1910
BstYI	RGATCY	4 cut(s)	680, 1241, 1318, 1910
BstZ17I	GTATAC	1 cut(s)	384
BsuRI	GGCC	8 cut(s)	183, 269, 630, 776, 915, 1399, 2076, 2218
BtgI	CCRYGG	2 cut(s)	916, 1162
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	9 cut(s)	415, 717, 931, 1009, 1198, 1598, 1687, 1826, 1849
BtsI	GCAGTG	1 cut(s)	1360
BtsIMutI	CAGTG	7 cut(s)	369, 432, 1231, 1315, 1360, 1407, 1908
BtuMI	TCGCGA	1 cut(s)	1416
BveI	ACCTGC	1 cut(s)	2044
Cac8I	GCNNGC	3 cut(s)	1590, 1964, 2116
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	2 cut(s)	664, 1207
CfoI	GCGC	2 cut(s)	903, 1738
Cfr10I	RCCGGY	1 cut(s)	2192
Cfr9I	CCCGGG	1 cut(s)	1535
CseI	GACGC	2 cut(s)	203, 572
CsiI	ACCWGGT	1 cut(s)	1678
Csp6I	GTAC	3 cut(s)	7, 543, 1971
CspAI	ACCGGT	1 cut(s)	2192
CviQI	GTAC	3 cut(s)	7, 543, 1971
DdeI	CTNAG	4 cut(s)	342, 1008, 1104, 2202
DrdI	GACNNNNNNGTC	1 cut(s)	989
DseDI	GACNNNNNNGTC	1 cut(s)	989
EaeI	YGGCCR	2 cut(s)	628, 913
Eam1104I	CTCTTC	3 cut(s)	891, 926, 1701
EarI	CTCTTC	3 cut(s)	891, 926, 1701
EciI	GGCGGA	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	1664
Eco130I	CCWWGG	2 cut(s)	916, 1759
Eco24I	GRGCYC	3 cut(s)	185, 1666, 2078
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	4 cut(s)	275, 1508, 1523, 1682
Eco53kI	GAGCTC	1 cut(s)	1664
Eco57I	CTGAAG	3 cut(s)	641, 954, 1884
Eco88I	CYCGRG	1 cut(s)	1535
Eco91I	GGTNACC	1 cut(s)	1763
EcoICRI	GAGCTC	1 cut(s)	1664
EcoNI	CCTNNNNNAGG	2 cut(s)	2040, 2211
EcoO109I	RGGNCCY	2 cut(s)	181, 2074
EcoO65I	GGTNACC	1 cut(s)	1763
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	8 cut(s)	574, 1278, 1399, 1519, 1564, 1678, 2180, 2212
EcoT14I	CCWWGG	2 cut(s)	916, 1759
EcoT38I	GRGCYC	3 cut(s)	185, 1666, 2078
ErhI	CCWWGG	2 cut(s)	916, 1759
FalI	AAGNNNNNCTT	4 cut(s)	815, 847, 972, 1004
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	3 cut(s)	667, 1366, 1453
FblI	GTMKAC	1 cut(s)	383
FokI	GGATG	9 cut(s)	422, 724, 938, 1016, 1185, 1585, 1674, 1813, 1836
FriOI	GRGCYC	3 cut(s)	185, 1666, 2078
FspBI	CTAG	3 cut(s)	366, 965, 1589
FspI	TGCGCA	1 cut(s)	1737
GlaI	GCGC	2 cut(s)	902, 1737
GsuI	CTGGAG	3 cut(s)	712, 1503, 2061
HaeIII	GGCC	8 cut(s)	183, 269, 630, 776, 915, 1399, 2076, 2218
HapII	CCGG	6 cut(s)	248, 273, 1536, 1908, 2159, 2193
HgaI	GACGC	2 cut(s)	203, 572
HhaI	GCGC	2 cut(s)	903, 1738
Hin1I	GRCGYC	1 cut(s)	583
Hin6I	GCGC	2 cut(s)	901, 1736
HinP1I	GCGC	2 cut(s)	901, 1736
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	2 cut(s)	814, 1121
HinfI	GANTC	9 cut(s)	340, 391, 568, 652, 694, 797, 1154, 1438, 1978
HpaII	CCGG	6 cut(s)	248, 273, 1536, 1908, 2159, 2193
HphI	GGTGA	5 cut(s)	86, 248, 317, 1463, 1757
Hpy166II	GTNNAC	6 cut(s)	384, 567, 940, 1685, 1865, 2132
Hpy188I	TCNGA	7 cut(s)	345, 484, 680, 1173, 1237, 1437, 1983
Hpy188III	TCNNGA	8 cut(s)	248, 665, 691, 806, 1208, 1415, 1908, 2139
Hpy8I	GTNNAC	6 cut(s)	384, 567, 940, 1685, 1865, 2132
HpyAV	CCTTC	8 cut(s)	342, 766, 1138, 1168, 1547, 1701, 1935, 2131
HpyCH4III	ACNGT	5 cut(s)	373, 427, 472, 888, 1310
HpyCH4IV	ACGT	1 cut(s)	1861
HpyF3I	CTNAG	4 cut(s)	342, 1008, 1104, 2202
HpySE526I	ACGT	1 cut(s)	1861
Hsp92I	GRCGYC	1 cut(s)	583
HspAI	GCGC	2 cut(s)	901, 1736
Kpn2I	TCCGGA	2 cut(s)	247, 1907
Ksp22I	TGATCA	3 cut(s)	667, 1366, 1453
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	4 cut(s)	250, 1147, 1661, 1669
LweI	GCATC	7 cut(s)	151, 201, 400, 994, 1177, 1207, 1858
MabI	ACCWGGT	1 cut(s)	1678
MaeI	CTAG	3 cut(s)	366, 965, 1589
MaeII	ACGT	1 cut(s)	1861
MaeIII	GTNAC	3 cut(s)	1040, 1180, 1763
MboII	GAAGA	7 cut(s)	222, 647, 908, 943, 1223, 1688, 1890
MfeI	CAATTG	2 cut(s)	453, 1994
MflI	RGATCY	4 cut(s)	680, 1241, 1318, 1910
MhlI	GDGCHC	4 cut(s)	185, 1666, 2078, 2134
MlsI	TGGCCA	2 cut(s)	630, 915
MluNI	TGGCCA	2 cut(s)	630, 915
MlyI	GAGTC	4 cut(s)	334, 385, 562, 703
MmeI	TCCRAC	2 cut(s)	1552, 1961
Mox20I	TGGCCA	2 cut(s)	630, 915
MroI	TCCGGA	2 cut(s)	247, 1907
MroXI	GAANNNNTTC	2 cut(s)	651, 801
MscI	TGGCCA	2 cut(s)	630, 915
MseI	TTAA	6 cut(s)	552, 639, 812, 867, 1065, 1425
MslI	CAYNNNNRTG	3 cut(s)	306, 374, 1731
Msp20I	TGGCCA	2 cut(s)	630, 915
MspA1I	CMGCKG	2 cut(s)	406, 449
MspCI	CTTAAG	1 cut(s)	811
MspI	CCGG	6 cut(s)	248, 273, 1536, 1908, 2159, 2193
MunI	CAATTG	2 cut(s)	453, 1994
MvaI	CCWGG	8 cut(s)	576, 1280, 1401, 1521, 1566, 1680, 2182, 2214
MvnI	CGCG	1 cut(s)	1416
NciI	CCSGG	4 cut(s)	273, 1536, 1537, 2160
NcoI	CCATGG	1 cut(s)	916
NheI	GCTAGC	1 cut(s)	1588
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	3 cut(s)	1040, 1180, 1763
NruI	TCGCGA	1 cut(s)	1416
NsbI	TGCGCA	1 cut(s)	1737
NspI	RCATGY	3 cut(s)	463, 1966, 2071
NspV	TTCGAA	1 cut(s)	851
OliI	CACNNNNGTG	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	1966
PagI	TCATGA	2 cut(s)	664, 1207
PaqCI	CACCTGC	1 cut(s)	2044
PasI	CCCWGGG	1 cut(s)	2181
PciI	ACATGT	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	891
PdmI	GAANNNNTTC	2 cut(s)	651, 801
PfeI	GAWTC	5 cut(s)	652, 797, 1154, 1438, 1978
PflMI	CCANNNNNTGG	3 cut(s)	1571, 2039, 2228
PfoI	TCCNGGA	1 cut(s)	1519
PinAI	ACCGGT	1 cut(s)	2192
PleI	GAGTC	4 cut(s)	334, 385, 562, 702
PpsI	GAGTC	4 cut(s)	334, 385, 562, 702
PscI	ACATGT	1 cut(s)	459
PshAI	GACNNNNGTC	1 cut(s)	1410
PshBI	ATTAAT	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	1666
Psp6I	CCWGG	8 cut(s)	574, 1278, 1399, 1519, 1564, 1678, 2180, 2212
PspEI	GGTNACC	1 cut(s)	1763
PspGI	CCWGG	8 cut(s)	574, 1278, 1399, 1519, 1564, 1678, 2180, 2212
PspOMI	GGGCCC	2 cut(s)	181, 2074
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	4 cut(s)	680, 1241, 1318, 1910
PvuII	CAGCTG	1 cut(s)	449
RruI	TCGCGA	1 cut(s)	1416
RsaI	GTAC	3 cut(s)	8, 544, 1972
RsaNI	GTAC	3 cut(s)	7, 543, 1971
RseI	CAYNNNNRTG	3 cut(s)	306, 374, 1731
SacI	GAGCTC	1 cut(s)	1666
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	6 cut(s)	552, 639, 812, 867, 1065, 1425
SchI	GAGTC	4 cut(s)	334, 385, 562, 703
SduI	GDGCHC	4 cut(s)	185, 1666, 2078, 2134
SexAI	ACCWGGT	1 cut(s)	1678
SfaNI	GCATC	7 cut(s)	151, 201, 400, 994, 1177, 1207, 1858
SfcI	CTRYAG	1 cut(s)	1817
SfuI	TTCGAA	1 cut(s)	851
SinI	GGWCC	4 cut(s)	275, 1508, 1523, 1682
SmaI	CCCGGG	1 cut(s)	1537
SmiMI	CAYNNNNRTG	3 cut(s)	306, 374, 1731
SmlI	CTYRAG	1 cut(s)	811
SmoI	CTYRAG	1 cut(s)	811
SphI	GCATGC	1 cut(s)	1966
SspI	AATATT	1 cut(s)	1217
SspMI	CTAG	3 cut(s)	366, 965, 1589
SstI	GAGCTC	1 cut(s)	1666
StyI	CCWWGG	2 cut(s)	916, 1759
TaaI	ACNGT	5 cut(s)	373, 427, 472, 888, 1310
TaiI	ACGT	1 cut(s)	1864
TaqI	TCGA	3 cut(s)	394, 851, 1546
TauI	GCSGC	6 cut(s)	193, 202, 205, 1588, 1849, 2002
TfiI	GAWTC	5 cut(s)	652, 797, 1154, 1438, 1978
Tru1I	TTAA	6 cut(s)	552, 639, 812, 867, 1065, 1425
Tru9I	TTAA	6 cut(s)	552, 639, 812, 867, 1065, 1425
TscAI	CASTG	7 cut(s)	376, 432, 1231, 1315, 1360, 1414, 1908
TseFI	GTSAC	3 cut(s)	1040, 1180, 1763
Tsp45I	GTSAC	3 cut(s)	1040, 1180, 1763
TspGWI	ACGGA	2 cut(s)	530, 1151
TspMI	CCCGGG	1 cut(s)	1535
TspRI	CASTG	7 cut(s)	376, 432, 1231, 1315, 1360, 1414, 1908
Van91I	CCANNNNNTGG	3 cut(s)	1571, 2039, 2228
Vha464I	CTTAAG	1 cut(s)	811
VneI	GTGCAC	1 cut(s)	2130
VpaK11BI	GGWCC	4 cut(s)	275, 1508, 1523, 1682
VspI	ATTAAT	1 cut(s)	552
XagI	CCTNNNNNAGG	2 cut(s)	2040, 2211
XapI	RAATTY	3 cut(s)	611, 1048, 1421
XceI	RCATGY	3 cut(s)	463, 1966, 2071
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1259
XmaI	CCCGGG	1 cut(s)	1535
XmiI	GTMKAC	1 cut(s)	383
XmnI	GAANNNNTTC	2 cut(s)	651, 801
XspI	CTAG	3 cut(s)	366, 965, 1589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.