Rh5BG447700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000356
Physical Location & Seq
Forward (+)
71773204 .. 71774561
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG447700.1

Sequence Viewer

Length: 471 bp
ATGCTGGAAATTACGCAAGGCCTTTCCATTGTTCATGAACGCTCTCGAGTACTTCAACATGTACGCACGTCAATTACAGGAACCCTAAGATCAAGAAGGCTATTACCCAGAAATTTACCGAGTACTTGCGTCGCGCTGTGGAGATTCGCGCCGTTTTGGATGATGGCAGGGCCGGACCGGCCTCCAACGGTGATGAAACGGTGGCTAGCAGGCCGAAAACCAAGCCCAAGGACGGCGAAGGCTATGATGGGGAGGATCCGGAGCAGGCCAAGCTCCGGGACGGGCTTAATTCGGCGATTATTAGGGGACAACCCAATTTCAAGTGGAATGATGTGGCGGGTCTCTAGAGCGGTAACCAAGCCTTGCAAGTGGCACTTGTATTGTCGGTCAAGTTCCTTACTGCGCAAATGTTTGCATTATAGCGGTCACTATTTTCTCAGACAAGTCGATGACAATCAACTTAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.97

Weight (kDa)

11.69

Isoelectric Point (pI)

72.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 350
AccII CGCG 2 cut(s) 134, 149
AccIII TCCGGA 1 cut(s) 258
AciI CCGC 3 cut(s) 337, 350, 423
AclWI GGATC 2 cut(s) 250, 263
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 3 cut(s) 51, 63, 124
AfiI CCNNNNNNNGG 2 cut(s) 232, 275
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 2 cut(s) 56, 321
AjiI CACGTC 1 cut(s) 69
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 2 cut(s) 250, 263
Ama87I CYCGRG 1 cut(s) 45
Aor13HI TCCGGA 1 cut(s) 258
AoxI GGCC 5 cut(s) 19, 170, 179, 211, 266
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 3 cut(s) 136, 151, 405
AspS9I GGNCC 2 cut(s) 170, 175
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 255
BccI CCATC 2 cut(s) 157, 241
BceAI ACGGC 2 cut(s) 136, 249
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 2 cut(s) 206, 345
BglI GCCNNNNNGGC 1 cut(s) 178
BmcAI AGTACT 2 cut(s) 51, 124
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 170, 175
BmiI GGNNCC 2 cut(s) 82, 257
BmrFI CCNGG 1 cut(s) 277
BmtI GCTAGC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 275
Bse118I RCCGGY 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 453
BseAI TCCGGA 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 232, 275
BseMII CTCAG 1 cut(s) 451
Bsh1236I CGCG 2 cut(s) 134, 149
BshFI GGCC 5 cut(s) 21, 172, 181, 213, 268
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 4 cut(s) 173, 178, 259, 276
BslFI GGGAC 2 cut(s) 292, 320
BslI CCNNNNNNNGG 2 cut(s) 232, 275
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 2 cut(s) 292, 320
BsnI GGCC 5 cut(s) 21, 172, 181, 213, 268
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 45
Bsp13I TCCGGA 1 cut(s) 258
Bsp143I GATC 2 cut(s) 89, 255
BspACI CCGC 3 cut(s) 337, 350, 423
BspANI GGCC 5 cut(s) 21, 172, 181, 213, 268
BspCNI CTCAG 1 cut(s) 450
BspEI TCCGGA 1 cut(s) 258
BspFNI CGCG 2 cut(s) 134, 149
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 82, 257
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 2 cut(s) 250, 263
BspTNI GGTCTC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 2 cut(s) 89, 255
BssT1I CCWWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 190, 201
BstC8I GCNNGC 3 cut(s) 207, 211, 266
BstDEI CTNAG 3 cut(s) 86, 437, 461
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 2 cut(s) 134, 149
BstHHI GCGC 3 cut(s) 136, 151, 405
BstKTI GATC 2 cut(s) 92, 258
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 2 cut(s) 89, 255
BstMWI GCNNNNNNNGC 2 cut(s) 178, 270
BstNSI RCATGY 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 2 cut(s) 134, 149
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 5 cut(s) 21, 172, 181, 213, 268
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 207, 211, 266
CciI TCATGA 1 cut(s) 34
CfoI GCGC 3 cut(s) 136, 151, 405
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 170, 175
CpoI CGGWCCG 1 cut(s) 175
CseI GACGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 50, 62, 123
CspI CGGWCCG 1 cut(s) 175
CviAII CATG 2 cut(s) 35, 59
CviQI GTAC 3 cut(s) 50, 62, 123
DdeI CTNAG 3 cut(s) 86, 437, 461
DpnI GATC 2 cut(s) 91, 257
DpnII GATC 2 cut(s) 89, 255
Eco130I CCWWGG 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 45
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 38, 62
FaiI YATR 4 cut(s) 36, 60, 245, 420
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 2 cut(s) 292, 320
FatI CATG 2 cut(s) 34, 58
FauI CCCGC 1 cut(s) 330
FokI GGATG 1 cut(s) 172
FspBI CTAG 2 cut(s) 206, 345
FspI TGCGCA 1 cut(s) 404
GlaI GCGC 3 cut(s) 135, 150, 404
HaeIII GGCC 5 cut(s) 21, 172, 181, 213, 268
HapII CCGG 4 cut(s) 173, 178, 259, 276
HgaI GACGC 1 cut(s) 118
HhaI GCGC 3 cut(s) 136, 151, 405
Hin1II CATG 2 cut(s) 38, 62
Hin6I GCGC 3 cut(s) 134, 149, 403
HinP1I GCGC 3 cut(s) 134, 149, 403
HinfI GANTC 1 cut(s) 144
HpaII CCGG 4 cut(s) 173, 178, 259, 276
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 440
Hpy188III TCNNGA 5 cut(s) 35, 45, 93, 259, 345
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 90, 232
HpyCH4III ACNGT 2 cut(s) 190, 201
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 366, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 270
HpyF3I CTNAG 3 cut(s) 86, 437, 461
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 38, 62
HspAI GCGC 3 cut(s) 134, 149, 403
Kpn2I TCCGGA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 89, 255
LmnI GCTCC 2 cut(s) 261, 278
LpnPI CCDG 9 cut(s) 63, 121, 153, 186, 191, 195, 250, 272, 289
MaeI CTAG 2 cut(s) 206, 345
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 352, 425
MalI GATC 2 cut(s) 91, 257
MbiI CCGCTC 1 cut(s) 350
MboI GATC 2 cut(s) 89, 255
MflI RGATCY 1 cut(s) 255
MluCI AATT 5 cut(s) 9, 72, 112, 288, 315
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 192, 246
MroI TCCGGA 1 cut(s) 258
MseI TTAA 1 cut(s) 287
MspI CCGG 4 cut(s) 173, 178, 259, 276
MspR9I CCNGG 1 cut(s) 277
MvnI CGCG 2 cut(s) 134, 149
MwoI GCNNNNNNNGC 2 cut(s) 178, 270
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 89, 255
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 2 cut(s) 38, 62
NlaIV GGNNCC 2 cut(s) 82, 257
NmuCI GTSAC 1 cut(s) 425
NsbI TGCGCA 1 cut(s) 404
NspI RCATGY 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 45
PagI TCATGA 1 cut(s) 34
PceI AGGCCT 1 cut(s) 21
PciI ACATGT 1 cut(s) 58
PfeI GAWTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 275
PscI ACATGT 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 82, 257
PspPI GGNCC 2 cut(s) 170, 175
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 3 cut(s) 51, 63, 124
RsaNI GTAC 3 cut(s) 50, 62, 123
Rsr2I CGGWCCG 1 cut(s) 175
RsrII CGGWCCG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 287
Sau3AI GATC 2 cut(s) 89, 255
Sau96I GGNCC 2 cut(s) 170, 175
ScaI AGTACT 2 cut(s) 51, 124
ScrFI CCNGG 1 cut(s) 277
SetI ASST 2 cut(s) 71, 275
SfiI GGCCNNNNNGGCC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 5 cut(s) 9, 72, 112, 288, 315
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 3 cut(s) 337, 350, 423
SspMI CTAG 2 cut(s) 206, 345
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 190, 201
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 46, 447
TaqII GACCGA 1 cut(s) 375
TasI AATT 5 cut(s) 9, 72, 112, 288, 315
TatI WGTACW 2 cut(s) 49, 122
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseFI GTSAC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 23, 51, 209
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 45
XspI CTAG 2 cut(s) 206, 345
ZrmI AGTACT 2 cut(s) 51, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.