Rorug01G0039900

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
6528715 .. 6528995
281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0039900.1

Sequence Viewer

Length: 192 bp
ATGAAGTCCTCCCACAATTTCATATCTCGGATCTTGCAAAGTCTGGAGGAGGATGGGCTAGAATTACTGAATGCTTCTTCCTTTGAGTCCTCTGGAGGGAGAATCTTCTATAATTTACATCTCCAGGTAGATATGTTCTGTAGGTTGGAATGCGAGAATTTAAGCGAGAAACTCATGTCCTTCTGTGCATGA

Protein Analysis

63

Amino Acids

7.22

Weight (kDa)

4.89

Isoelectric Point (pI)

74.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 96
AjnI CCWGG 1 cut(s) 123
AlwI GGATC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 157
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 125
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BpmI CTGGAG 3 cut(s) 65, 107, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 96
BsmI GAATGC 2 cut(s) 76, 155
Bsp143I GATC 1 cut(s) 30
BspPI GGATC 1 cut(s) 38
BssMI GATC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BtsCI GGATG 1 cut(s) 58
CviAII CATG 2 cut(s) 175, 189
CviJI RGCY 1 cut(s) 58
CviKI_1 RGCY 1 cut(s) 58
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 178, 192
FaiI YATR 5 cut(s) 23, 111, 134, 176, 190
FatI CATG 2 cut(s) 174, 188
FokI GGATG 1 cut(s) 65
FspBI CTAG 1 cut(s) 59
GsuI CTGGAG 3 cut(s) 65, 107, 114
Hin1II CATG 2 cut(s) 178, 192
HinfI GANTC 2 cut(s) 86, 102
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 44, 93
HpyAV CCTTC 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 37, 188
Hsp92II CATG 2 cut(s) 178, 192
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 29, 78, 110, 137
MaeI CTAG 1 cut(s) 59
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 69, 97
MflI RGATCY 1 cut(s) 30
MluCI AATT 4 cut(s) 16, 62, 112, 157
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 19, 40, 43, 89, 100
MseI TTAA 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 2 cut(s) 76, 155
MvaI CCWGG 1 cut(s) 125
NdeII GATC 1 cut(s) 30
NlaIII CATG 2 cut(s) 178, 192
PctI GAATGC 2 cut(s) 76, 155
PfeI GAWTC 1 cut(s) 102
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 30
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 1 cut(s) 30
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 125
SetI ASST 2 cut(s) 129, 146
SfcI CTRYAG 1 cut(s) 139
Sse9I AATT 4 cut(s) 16, 62, 112, 157
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 123
TasI AATT 4 cut(s) 16, 62, 112, 157
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 10, 17
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.