RLG00000017697

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
20150826 .. 20151604
779 bp
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UTR
Exon/CDS
Intron
RLM00000017697

Sequence Viewer

Length: 645 bp
ATGGCTCTACACTATTCGACGCCGTCCGATTTGGACCAGACGATTTGGGGAACGAAGGCAGGGATCTGTAGACGTCGCTCCCGGCCTCATCGTCGTTGCTGCTGCCGAGAGGTCGCTTCAGTCCGACTCGCAACTTCGTCAAGGAGGTCATCACCTGCTTCAATGAGATCGATTTCCACCGCTCGACCCGAGGACCCGATCCGGCGAGGACCTCAGCTCCGTTTTGCAGAACCACCAGCCGCCGTCGTTTCAGCCTCTGGCTCCGGCGACTTCTCACGGCAAGTTTGGATTTGTTTCGGTGACCGGCCGGAGTCGATTTCGATTCAGGCCTCGTCTCCAATTGGATCTCTAGTGATGATGGAGGCTCAATCAAGTACTGGAAGATGCCAACAAGAGCAGACATTGACCGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCTCTTGTTTCCTCTGCTCATCTTCTACTTGCTATTCAATCTCTCCTGTGTAGCTAAAGCTGAAGATGAAAAAAATGTCACCAACATTGGAGCAATCATTGATGTTAATTCCCATATCGGCAAAGAGCAGAAAGCTGTTATGGAAATTGCAGCAGAAAACTTCAACAAACAGTCAGACACTCATGAGCTAATCCTTCATTTTTGA

Protein Analysis

215

Amino Acids

23.73

Weight (kDa)

8.75

Isoelectric Point (pI)

68.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 163
AatII GACGTC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 70
AciI CCGC 2 cut(s) 180, 240
AclWI GGATC 3 cut(s) 71, 193, 352
AcoI YGGCCR 2 cut(s) 305, 409
AcuI CTGAAG 2 cut(s) 102, 522
AcyI GRCGYC 2 cut(s) 20, 73
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 3 cut(s) 162, 478, 604
AluBI AGCT 5 cut(s) 217, 494, 500, 575, 628
AluI AGCT 5 cut(s) 217, 494, 500, 575, 628
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 3 cut(s) 71, 193, 352
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 4 cut(s) 83, 305, 327, 409
ApeKI GCWGC 3 cut(s) 99, 102, 590
AspS9I GGNCC 3 cut(s) 34, 193, 209
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 3 cut(s) 144, 311, 511
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 34, 193, 209
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 86, 89, 602
BccI CCATC 1 cut(s) 352
BceAI ACGGC 3 cut(s) 7, 227, 293
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 4 cut(s) 100, 103, 240, 591
BlsI GCNGC 4 cut(s) 101, 104, 241, 592
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 3 cut(s) 34, 193, 209
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 34, 193, 209
BmiI GGNNCC 2 cut(s) 195, 262
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 170
BsaHI GRCGYC 2 cut(s) 20, 73
BsaJI CCNNGG 2 cut(s) 189, 412
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bse118I RCCGGY 2 cut(s) 303, 407
Bse1I ACTGG 2 cut(s) 382, 443
BseCI ATCGAT 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 189, 412
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 382, 443
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 3 cut(s) 86, 89, 602
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 4 cut(s) 85, 307, 329, 411
BshVI ATCGAT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 6 cut(s) 82, 202, 264, 304, 308, 408
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 4 cut(s) 85, 307, 329, 411
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 4 cut(s) 63, 167, 198, 344
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 2 cut(s) 180, 240
BspANI GGCC 4 cut(s) 85, 307, 329, 411
BspCNI CTCAG 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 170
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 195, 262
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 3 cut(s) 71, 193, 352
BsrBI CCGCTC 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 303, 407
BsrI ACTGG 2 cut(s) 382, 443
BssAI RCCGGY 2 cut(s) 303, 407
BssECI CCNNGG 2 cut(s) 189, 412
BssMI GATC 4 cut(s) 63, 167, 198, 344
BssNI GRCGYC 2 cut(s) 20, 73
BssT1I CCWWGG 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 612
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 2 cut(s) 20, 73
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 412
BstEII GGTNACC 1 cut(s) 299
BstKTI GATC 4 cut(s) 66, 170, 201, 347
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 63, 167, 198, 344
BstMCI CGRYCG 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 86, 89, 602
BstX2I RGATCY 2 cut(s) 63, 344
BstYI RGATCY 2 cut(s) 63, 344
BstZI CGGCCG 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 170
BsuRI GGCC 4 cut(s) 85, 307, 329, 411
BsuTUI ATCGAT 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 163
CaiI CAGNNNCTG 1 cut(s) 257
CciI TCATGA 1 cut(s) 622
Cfr10I RCCGGY 2 cut(s) 303, 407
Cfr13I GGNCC 3 cut(s) 34, 193, 209
ClaI ATCGAT 1 cut(s) 170
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 413, 623
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 213
DpnI GATC 4 cut(s) 65, 169, 200, 346
DpnII GATC 4 cut(s) 63, 167, 198, 344
EaeI YGGCCR 2 cut(s) 305, 409
EagI CGGCCG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 412
Eco147I AGGCCT 1 cut(s) 329
Eco47I GGWCC 3 cut(s) 34, 193, 209
Eco52I CGGCCG 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 102, 522
Eco88I CYCGRG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 193, 209
EcoO65I GGTNACC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 416, 626
FaiI YATR 4 cut(s) 414, 555, 581, 624
FatI CATG 2 cut(s) 412, 622
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 100, 103, 240, 591
Fsp4HI GCNGC 4 cut(s) 100, 103, 240, 591
FspBI CTAG 1 cut(s) 350
GluI GCNGC 4 cut(s) 100, 103, 240, 591
HaeIII GGCC 4 cut(s) 85, 307, 329, 411
HapII CCGG 6 cut(s) 82, 202, 264, 304, 308, 408
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 2 cut(s) 20, 73
Hin1II CATG 2 cut(s) 416, 626
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 3 cut(s) 126, 311, 322
HpaII CCGG 6 cut(s) 82, 202, 264, 304, 308, 408
HphI GGTGA 3 cut(s) 144, 311, 511
Hpy166II GTNNAC 2 cut(s) 71, 436
Hpy188I TCNGA 3 cut(s) 28, 125, 616
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 2 cut(s) 71, 436
Hpy99I CGWCG 4 cut(s) 22, 78, 96, 248
HpyAV CCTTC 2 cut(s) 49, 644
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 227, 590
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 2 cut(s) 20, 73
Hsp92II CATG 2 cut(s) 416, 626
Kzo9I GATC 4 cut(s) 63, 167, 198, 344
LmnI GCTCC 4 cut(s) 83, 222, 266, 530
Lsp1109I GCAGC 3 cut(s) 86, 89, 602
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 299, 517
MalI GATC 4 cut(s) 65, 169, 200, 346
MbiI CCGCTC 1 cut(s) 182
MboI GATC 4 cut(s) 63, 167, 198, 344
MboII GAAGA 4 cut(s) 393, 439, 454, 515
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 63, 344
MluCI AATT 3 cut(s) 339, 547, 585
MlyI GAGTC 2 cut(s) 120, 320
MmeI TCCRAC 2 cut(s) 148, 398
MseI TTAA 1 cut(s) 546
MspI CCGG 6 cut(s) 82, 202, 264, 304, 308, 408
MspR9I CCNGG 1 cut(s) 82
MunI CAATTG 1 cut(s) 339
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 412
NdeII GATC 4 cut(s) 63, 167, 198, 344
NlaIII CATG 2 cut(s) 416, 626
NlaIV GGNNCC 2 cut(s) 195, 262
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 299, 517
PagI TCATGA 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 163
PceI AGGCCT 1 cut(s) 329
PfeI GAWTC 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 101, 104, 241, 592
PleI GAGTC 2 cut(s) 120, 319
PpsI GAGTC 2 cut(s) 120, 319
PpuMI RGGWCCY 2 cut(s) 193, 209
Psp5II RGGWCCY 2 cut(s) 193, 209
PspEI GGTNACC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 195, 262
PspPI GGNCC 3 cut(s) 34, 193, 209
PspPPI RGGWCCY 2 cut(s) 193, 209
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 63, 344
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 4 cut(s) 100, 103, 240, 591
Sau3AI GATC 4 cut(s) 63, 167, 198, 344
Sau96I GGNCC 3 cut(s) 34, 193, 209
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 2 cut(s) 120, 320
ScrFI CCNGG 1 cut(s) 82
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 3 cut(s) 34, 193, 209
Sse9I AATT 3 cut(s) 339, 547, 585
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 2 cut(s) 180, 240
SspMI CTAG 1 cut(s) 350
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 612
TaiI ACGT 1 cut(s) 76
TaqI TCGA 5 cut(s) 17, 170, 184, 314, 320
TasI AATT 3 cut(s) 339, 547, 585
TatI WGTACW 1 cut(s) 374
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseFI GTSAC 2 cut(s) 299, 517
TseI GCWGC 3 cut(s) 99, 102, 590
Tsp45I GTSAC 2 cut(s) 299, 517
TspDTI ATGAA 2 cut(s) 522, 626
TspGWI ACGGA 1 cut(s) 209
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 3 cut(s) 34, 193, 209
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 1 cut(s) 350
ZraI GACGTC 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.