RLG00000020158

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000356
Physical Location & Seq
Forward (+)
61854124 .. 61855505
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020158

Sequence Viewer

Length: 441 bp
ATGGAGAGCTATTCTTCCAGGACAGCGACTTATTCAACCGCGGAGGCGACGCAGAAGACCCATGGCTCTACACTGTTCGACGCCGTTCGATTTAGACTGGACGATTTGCAGAACGGCGGCAGGGATCTGTCCGACTCGCGACTTCGTCGAGGAGAACCACCAGCCGCCGGCATTTCAGCCTTAAGCTCCTGCGAGTTTGGATTTGTTTCAGTGACCGGCCAGAGTCGAATTCGATTCAGGCCTAGTCTCCAATTCGATCCTTTCAGCACCAGAGGAGGAGTCATGGATGAAACGACGCCATCCGGTGCTTTAGAAGGTGAGGCTGAAACAAAGAGTATGGTTTTCGATAGGCTGGGGGATTTGGTGCAGCAAGAAGAGAGGGTTTCGGTCATAGGCCAAGGTCATGGGGAAAACAGCATCCTTGTCACCAAAAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.89

Weight (kDa)

5.2

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 41, 139
AciI CCGC 4 cut(s) 39, 41, 117, 165
AclWI GGATC 2 cut(s) 132, 251
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 228
AcyI GRCGYC 2 cut(s) 81, 296
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 2 cut(s) 9, 186
AluI AGCT 2 cut(s) 9, 186
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 132, 251
AoxI GGCC 3 cut(s) 217, 239, 394
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 329, 418
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 307
BceAI ACGGC 2 cut(s) 68, 130
BciT130I CCWGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 181
BisI GCNGC 3 cut(s) 118, 165, 368
BlsI GCNGC 3 cut(s) 119, 166, 369
Bme1390I CCNGG 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 62
BsaHI GRCGYC 2 cut(s) 81, 296
BsaJI CCNNGG 3 cut(s) 39, 61, 397
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 2 cut(s) 167, 215
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 3 cut(s) 39, 61, 397
BseGI GGATG 3 cut(s) 292, 299, 417
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 3 cut(s) 165, 288, 291
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 41, 139
BshFI GGCC 3 cut(s) 219, 241, 396
BsiSI CCGG 3 cut(s) 168, 216, 303
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 3 cut(s) 219, 241, 396
Bsp143I GATC 2 cut(s) 124, 256
Bsp19I CCATGG 1 cut(s) 61
Bsp68I TCGCGA 1 cut(s) 139
BspACI CCGC 4 cut(s) 39, 41, 117, 165
BspANI GGCC 3 cut(s) 219, 241, 396
BspFNI CGCG 2 cut(s) 41, 139
BspPI GGATC 2 cut(s) 132, 251
BspTI CTTAAG 1 cut(s) 181
BsrFI RCCGGY 2 cut(s) 167, 215
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 2 cut(s) 167, 215
BssECI CCNNGG 3 cut(s) 39, 61, 397
BssMI GATC 2 cut(s) 124, 256
BssNI GRCGYC 2 cut(s) 81, 296
BssT1I CCWWGG 2 cut(s) 61, 397
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 2 cut(s) 81, 296
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 169
BstDSI CCRYGG 2 cut(s) 39, 61
BstF5I GGATG 3 cut(s) 292, 299, 417
BstFNI CGCG 2 cut(s) 41, 139
BstKTI GATC 2 cut(s) 127, 259
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 124, 256
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstUI CGCG 2 cut(s) 41, 139
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 3 cut(s) 219, 241, 396
BtgI CCRYGG 2 cut(s) 39, 61
BtsCI GGATG 3 cut(s) 292, 299, 417
BtsIMutI CAGTG 2 cut(s) 71, 216
BtuMI TCGCGA 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 169
Cfr10I RCCGGY 2 cut(s) 167, 215
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 3 cut(s) 58, 89, 304
CviAII CATG 3 cut(s) 62, 283, 404
DpnI GATC 2 cut(s) 126, 258
DpnII GATC 2 cut(s) 124, 256
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 61, 397
Eco147I AGGCCT 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 17
EcoT14I CCWWGG 2 cut(s) 61, 397
ErhI CCWWGG 2 cut(s) 61, 397
FaeI CATG 3 cut(s) 65, 286, 407
FaiI YATR 5 cut(s) 63, 284, 338, 392, 405
FatI CATG 3 cut(s) 61, 282, 403
Fnu4HI GCNGC 3 cut(s) 118, 165, 368
FokI GGATG 3 cut(s) 286, 299, 404
Fsp4HI GCNGC 3 cut(s) 118, 165, 368
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 118, 165, 368
GsaI CCCAGC 1 cut(s) 356
HaeIII GGCC 3 cut(s) 219, 241, 396
HapII CCGG 3 cut(s) 168, 216, 303
HgaI GACGC 3 cut(s) 58, 89, 304
Hin1I GRCGYC 2 cut(s) 81, 296
Hin1II CATG 3 cut(s) 65, 286, 407
HinfI GANTC 4 cut(s) 134, 223, 234, 279
HpaII CCGG 3 cut(s) 168, 216, 303
HphI GGTGA 2 cut(s) 329, 418
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 138
Hpy99I CGWCG 4 cut(s) 52, 83, 150, 298
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 109, 367
Hsp92I GRCGYC 2 cut(s) 81, 296
Hsp92II CATG 3 cut(s) 65, 286, 407
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 2 cut(s) 124, 256
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 211, 424
MalI GATC 2 cut(s) 126, 258
MboI GATC 2 cut(s) 124, 256
MboII GAAGA 3 cut(s) 6, 67, 386
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 228, 251
MlyI GAGTC 3 cut(s) 128, 232, 288
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 6 cut(s) 37, 143, 266, 269, 313, 372
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 3 cut(s) 168, 216, 303
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 2 cut(s) 41, 139
NaeI GCCGGC 1 cut(s) 169
NcoI CCATGG 1 cut(s) 61
NdeII GATC 2 cut(s) 124, 256
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 3 cut(s) 65, 286, 407
NmuCI GTSAC 2 cut(s) 211, 424
NruI TCGCGA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 3 cut(s) 119, 166, 369
PleI GAGTC 3 cut(s) 128, 231, 287
PpsI GAGTC 3 cut(s) 128, 231, 287
Psp6I CCWGG 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 144
RruI TCGCGA 1 cut(s) 139
SacII CCGCGG 1 cut(s) 42
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 3 cut(s) 118, 165, 368
Sau3AI GATC 2 cut(s) 124, 256
SchI GAGTC 3 cut(s) 128, 232, 288
ScrFI CCNGG 1 cut(s) 19
SetI ASST 4 cut(s) 11, 188, 319, 403
SfaNI GCATC 1 cut(s) 426
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 228, 251
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 4 cut(s) 39, 41, 117, 165
SspMI CTAG 1 cut(s) 243
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 2 cut(s) 61, 397
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 7 cut(s) 78, 88, 148, 226, 232, 255, 345
TaqII GACCGA 1 cut(s) 376
TasI AATT 2 cut(s) 228, 251
TauI GCSGC 2 cut(s) 120, 167
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 2 cut(s) 78, 216
TseFI GTSAC 2 cut(s) 211, 424
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 211, 424
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 2 cut(s) 78, 216
Tth111I GACNNNGTC 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 181
XapI RAATTY 1 cut(s) 228
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.