Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8066382.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 572

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8066382.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 572 bp

acacagactcgaaagcggcagcgtgatgcaagggatacaacagtgttgcaacctacaccagcagcatcaatcaattcgttgccgccggttgcgtattcggataacccatctaggagctttgctgcaaagtttgtgcatgcttgtacaaattacagagcccgtacttgtccgattaatcgggttttgtggacaccttccgggaggcgtctcattacagggtcccaaaatggggagttcactctttgggatggtcagtcatttaactatgaattgagttttctggctcatgatcaagcagtcaggtctatggcgtggagttatgatggtgagaattggatttctggtgatgatgggggatcaataaagtattggacgagtaacatgaacaatgtgctagtcaatgaatctgctcaccgagaatcggttcgggacttgagcttttgtaggactaatttgaagttctgttcatgttcggatgatacttatgtgaaaatctgggattatgaaaggtgccaagaagagttcagattgactggccatggttggaatgtgaagagtgttgactggcaccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

191

Amino Acids

21.94

Weight (kDa)

7.59

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	510, 567
AciI	CCGC	2 cut(s)	16, 83
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	2 cut(s)	145, 163
AfiI	CCNNNNNNNGG	3 cut(s)	228, 229, 421
AgsI	TTSAA	1 cut(s)	457
AluBI	AGCT	2 cut(s)	117, 438
AluI	AGCT	2 cut(s)	117, 438
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	3 cut(s)	19, 62, 122
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	338, 356, 404
AvaII	GGWCC	1 cut(s)	219
BaeI	ACNNNNGTAYC	4 cut(s)	27, 60, 471, 504
BalI	TGGCCA	1 cut(s)	537
BanI	GGYRCC	2 cut(s)	510, 567
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	31, 74, 109
BccI	CCATC	4 cut(s)	115, 242, 317, 344
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	111, 395
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	5 cut(s)	17, 20, 63, 83, 123
BlsI	GCNGC	5 cut(s)	18, 21, 64, 84, 124
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	4 cut(s)	220, 221, 512, 569
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	16, 74
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 229, 421
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	2 cut(s)	538, 569
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	2 cut(s)	253, 481
BseLI	CCNNNNNNNGG	3 cut(s)	228, 229, 421
BseNI	ACTGG	2 cut(s)	538, 569
BseXI	GCAGC	3 cut(s)	31, 74, 109
BshFI	GGCC	1 cut(s)	537
BshNI	GGYRCC	2 cut(s)	510, 567
BsiSI	CCGG	2 cut(s)	86, 198
BslFI	GGGAC	2 cut(s)	205, 443
BslI	CCNNNNNNNGG	3 cut(s)	228, 229, 421
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	205, 443
BsnI	GGCC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	289, 356
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	2 cut(s)	16, 83
BspANI	GGCC	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	220, 221, 512, 569
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	2 cut(s)	510, 567
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	538, 569
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	289, 356
BssNI	GRCGYC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	538
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	513, 548
BstACI	GRCGYC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	253, 481
BstKTI	GATC	2 cut(s)	292, 359
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	289, 356
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	31, 74, 109
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	537
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	253, 481
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	219
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	144, 162
CviAII	CATG	5 cut(s)	137, 287, 382, 468, 539
CviJI	RGCY	5 cut(s)	117, 158, 284, 438, 537
CviKI_1	RGCY	5 cut(s)	117, 158, 284, 438, 537
CviQI	GTAC	2 cut(s)	144, 162
DpnI	GATC	2 cut(s)	291, 358
DpnII	GATC	2 cut(s)	289, 356
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	513, 548
EarI	CTCTTC	2 cut(s)	513, 548
Eco130I	CCWWGG	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	5 cut(s)	140, 290, 385, 471, 542
FaqI	GGGAC	2 cut(s)	205, 443
FatI	CATG	5 cut(s)	136, 286, 381, 467, 538
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	5 cut(s)	17, 20, 63, 83, 123
FokI	GGATG	2 cut(s)	260, 488
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	17, 20, 63, 83, 123
FspBI	CTAG	2 cut(s)	111, 395
GluI	GCNGC	5 cut(s)	17, 20, 63, 83, 123
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	2 cut(s)	86, 198
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	5 cut(s)	140, 290, 385, 471, 542
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	7, 404, 419
HpaII	CCGG	2 cut(s)	86, 198
HphI	GGTGA	3 cut(s)	338, 356, 404
Hpy166II	GTNNAC	3 cut(s)	189, 237, 562
Hpy188I	TCNGA	4 cut(s)	100, 171, 475, 527
Hpy188III	TCNNGA	2 cut(s)	287, 428
Hpy8I	GTNNAC	3 cut(s)	189, 237, 562
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	29, 49, 125, 136
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	140, 290, 385, 471, 542
KflI	GGGWCCC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	289, 356
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	3 cut(s)	31, 74, 109
LweI	GCATC	2 cut(s)	16, 74
MaeI	CTAG	2 cut(s)	111, 395
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	291, 358
MboI	GATC	2 cut(s)	289, 356
MboII	GAAGA	2 cut(s)	530, 565
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	5 cut(s)	73, 148, 269, 331, 451
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	174, 261
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	2 cut(s)	86, 198
MspR9I	CCNGG	1 cut(s)	199
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	289, 356
NlaIII	CATG	5 cut(s)	140, 290, 385, 471, 542
NlaIV	GGNNCC	4 cut(s)	220, 221, 512, 569
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	404, 419
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	18, 21, 64, 84, 124
PpuMI	RGGWCCY	1 cut(s)	219
PshBI	ATTAAT	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	219
PspN4I	GGNNCC	4 cut(s)	220, 221, 512, 569
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	145, 163
RsaNI	GTAC	2 cut(s)	144, 162
SaqAI	TTAA	2 cut(s)	174, 261
SatI	GCNGC	5 cut(s)	17, 20, 63, 83, 123
Sau3AI	GATC	2 cut(s)	289, 356
Sau96I	GGNCC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	55, 119, 196, 305, 440, 512
SfaNI	GCATC	2 cut(s)	16, 74
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	5 cut(s)	73, 148, 269, 331, 451
SsiI	CCGC	2 cut(s)	16, 83
SspMI	CTAG	2 cut(s)	111, 395
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	10
TasI	AATT	5 cut(s)	73, 148, 269, 331, 451
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	19, 85
TfiI	GAWTC	2 cut(s)	404, 419
Tru1I	TTAA	2 cut(s)	174, 261
Tru9I	TTAA	2 cut(s)	174, 261
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	3 cut(s)	19, 62, 122
TspDTI	ATGAA	5 cut(s)	282, 398, 417, 456, 519
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	111, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.