Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

35894552 .. 35895697

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCCCATCACCACCACCCCTACGCCCAGAATCGAACCTGTTCTTCGATTAACAACAACCCATTTGCTGCCCAGTTTGTGCGCTGTCGTATAAATTACAGAGCCCCTTCTTCGATCAATCGAGTTTTATGGACACCTTCTGGGAGGCGTCTTATTACAGGCTCTCAAAACGGGGAGTTCACTCTTTGGGACGGTGAGTCATTTAAGCATGAATTGAGGATTCAGGGTCATGATCACGCAATCAGGTCCATGGCGTGGAGTTTTGGTGATCAAGATTGGATCTCTGGTGATGATGGAGGCACGATCAGGTATTGGAAGAGTAACATGATTAATGTGCTAGTCAATGAATCTGCTCACCAAGAATCGGTTCGGGACTTGAGCTTCTGTCGGAGTAATTTGAAGTTTTGTTCATGTTCCGATGATACTAGTGTTAAAATCTGGGATTTTGAACGGTGCCAACAGGAGCAGACACTGACCGGCCATGGTTGGAATGTCAAGAGTGTTGACTGGCACCCCGCAAACTCTCTAATAGCTTCGGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGTCACGCAGAGAACTCTGTTCGTTTTATGATCACAAAAATTGGGTGCATTCTGTCAAGTGGAACCGAAATGGTAACTGGCTGCTAACTGCTTCCAAGGATCATGTCATTAAGCTTTACGACTTGAGGGCTATGAAGGAACTCAAATCTTTCCGCGGCCATCAGAACCAAGTGACTGCTCTAGCTTGGCATCCTCTTACTGAAGACTATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGTCACTCCCCAGGTTGAAATTCCTAATGCACACACCAACAGTTACAATAATAGTGTGTGGGATCTCCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGTAGCAATGATCGCACCACCAAGTTTTGGTGCAGAACAGGACATAAATCTCAAATCACTCAGAATCAAAGTAATTCTGCTTTTGCTTGTCACATGAACACTAATTTTCCTTTTCCATATCATGGACCACCAACTATTGCTACTCGAGACCAAGGAACCCTTGGTTCAGGAGGTGTTGGAACCATTATACCTGGTGTTGGAATTGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

381

Amino Acids

43.26

Weight (kDa)

8.65

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	35 - 193	7.8e-23	CDC20/Fizzy WD40 domain
Beta-prop_IFT140_1st	PF23383	36 - 123	8e-08	IFT140 first beta-propeller
Beta-prop_WDR3_1st	PF25173	36 - 168	3.6e-18	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	36 - 107	8.6e-06	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	37 - 107	1.2e-07	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	38 - 108	1.1e-06	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	38 - 242	1.6e-19	G protein beta WD-40 repeat protein
Beta-prop_EIPR1	PF23609	40 - 189	9.9e-07	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	42 - 197	3.2e-15	WDHD1 first WD40 domain
WD40_Prp19	PF24814	45 - 242	3.1e-31	Prp19 WD40 domain
EIF3I	PF24805	70 - 156	2.1e-07	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	81 - 247	7.5e-11	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	89 - 253	1.9e-15	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	101 - 233	4.8e-28	WDR5 beta-propeller domain
WDR55	PF24796	109 - 237	1e-16	WDR55
Beta-prop_EIPR1	PF23609	113 - 231	2.8e-08	EIPR1 beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	114 - 275	2.6e-19	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	117 - 194	2.3e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	118 - 191	1.6e-10	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	119 - 197	1.4e-16	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	131 - 278	1.7e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	134 - 222	1.8e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st	PF25173	143 - 274	4.2e-28	WDR3 first beta-propeller domain
WD40	PF00400	153 - 190	1.3e-09	WD domain, G-beta repeat
Beta-prop_EML	PF23409	159 - 264	5.5e-09	Echinoderm microtubule-associated protein first beta-propeller
EIF3I	PF24805	163 - 244	9.1e-10	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	165 - 328	1.5e-08	MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	176 - 238	7.4e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	180 - 322	7.9e-08	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	194 - 336	6.3e-20	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	197 - 325	7.3e-11	WDR3 second beta-propeller domain
WD40	PF00400	197 - 232	7.9e-08	WD domain, G-beta repeat
Beta-prop_DCAF4	PF23761	198 - 260	2.8e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_WDR5	PF25175	200 - 280	1.7e-14	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	203 - 336	1.7e-24	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	206 - 317	7.9e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	207 - 324	1.6e-12	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	219 - 329	4.9e-06	WDR90/POC16, second beta-propeller
WD40	PF00400	237 - 274	8.5e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	239 - 334	2.3e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	239 - 324	2.6e-09	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	242 - 338	4.3e-07	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	554, 785
AccB1I	GGYRCC	2 cut(s)	453, 510
AccB7I	CCANNNNNTGG	3 cut(s)	255, 960, 1055
AccII	CGCG	1 cut(s)	729
AciI	CCGC	4 cut(s)	516, 727, 729, 1139
AclWI	GGATC	5 cut(s)	287, 681, 801, 814, 903
AcoI	YGGCCR	2 cut(s)	478, 730
AcsI	RAATTY	1 cut(s)	852
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	148
AfiI	CCNNNNNNNGG	5 cut(s)	255, 364, 960, 1055, 1130
AgsI	TTSAA	3 cut(s)	400, 449, 851
AhdI	GACNNNNNGTC	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	843, 1123
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	4 cut(s)	381, 533, 688, 758
AluI	AGCT	4 cut(s)	381, 533, 688, 758
Alw26I	GTCTC	1 cut(s)	1074
AlwI	GGATC	5 cut(s)	287, 681, 801, 814, 903
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	1077
AoxI	GGCC	3 cut(s)	3, 478, 730
ApeKI	GCWGC	2 cut(s)	68, 655
ApoI	RAATTY	1 cut(s)	852
AseI	ATTAAT	1 cut(s)	330
Asp700I	GAANNNNTTC	2 cut(s)	40, 366
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	4, 246, 1058
AsuHPI	GGTGA	4 cut(s)	206, 278, 299, 347
AvaI	CYCGRG	1 cut(s)	1077
AvaII	GGWCC	2 cut(s)	246, 1058
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	1 cut(s)	806
BanI	GGYRCC	2 cut(s)	453, 510
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	55, 642
BccI	CCATC	4 cut(s)	15, 287, 741, 797
BciT130I	CCWGG	2 cut(s)	845, 1125
BclI	TGATCA	3 cut(s)	232, 268, 604
BcoDI	GTCTC	1 cut(s)	1074
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	4 cut(s)	338, 426, 573, 755
BisI	GCNGC	3 cut(s)	69, 656, 730
BlsI	GCNGC	3 cut(s)	70, 657, 731
Bme1390I	CCNGG	2 cut(s)	845, 1125
Bme18I	GGWCC	2 cut(s)	246, 1058
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	1077
BmgT120I	GGNCC	3 cut(s)	4, 246, 1058
BmiI	GGNNCC	6 cut(s)	455, 512, 638, 808, 1090, 1114
BmrFI	CCNGG	2 cut(s)	845, 1125
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	559, 772, 916
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	884
BpuEI	CTTGAG	2 cut(s)	397, 718
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	1074
BsaJI	CCNNGG	7 cut(s)	249, 481, 669, 727, 843, 1084, 1093
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 364, 960, 1055, 1130
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	4 cut(s)	73, 512, 656, 901
Bse3DI	GCAATG	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	845, 1125
BseDI	CCNNGG	7 cut(s)	249, 481, 669, 727, 843, 1084, 1093
BseGI	GGATG	3 cut(s)	574, 763, 907
BseLI	CCNNNNNNNGG	5 cut(s)	255, 364, 960, 1055, 1130
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	1 cut(s)	1007
BseNI	ACTGG	4 cut(s)	73, 512, 656, 901
BseXI	GCAGC	2 cut(s)	55, 642
BsgI	GTGCAG	1 cut(s)	985
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	5, 480, 732
BshNI	GGYRCC	2 cut(s)	453, 510
BsiHKCI	CYCGRG	1 cut(s)	1077
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	203, 386
BslI	CCNNNNNNNGG	5 cut(s)	255, 364, 960, 1055, 1130
BsmAI	GTCTC	1 cut(s)	1074
BsmFI	GGGAC	2 cut(s)	203, 386
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	5, 480, 732
Bso31I	GGTCTC	1 cut(s)	1074
BsoBI	CYCGRG	1 cut(s)	1077
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp19I	CCATGG	2 cut(s)	249, 481
BspACI	CCGC	4 cut(s)	516, 727, 729, 1139
BspANI	GGCC	3 cut(s)	5, 480, 732
BspCNI	CTCAG	1 cut(s)	1006
BspFNI	CGCG	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	6 cut(s)	455, 512, 638, 808, 1090, 1114
BspPI	GGATC	5 cut(s)	287, 681, 801, 814, 903
BspT107I	GGYRCC	2 cut(s)	453, 510
BspTNI	GGTCTC	1 cut(s)	1074
BsrDI	GCAATG	1 cut(s)	946
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	4 cut(s)	73, 512, 656, 901
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	7 cut(s)	249, 481, 669, 727, 843, 1084, 1093
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	5 cut(s)	249, 481, 669, 1084, 1093
Bst2UI	CCWGG	2 cut(s)	845, 1125
Bst4CI	ACNGT	5 cut(s)	194, 453, 551, 564, 875
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	993
BstDSI	CCRYGG	3 cut(s)	249, 481, 727
BstF5I	GGATG	3 cut(s)	574, 763, 907
BstFNI	CGCG	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	1074
BstMWI	GCNNNNNNNGC	2 cut(s)	829, 945
BstNI	CCWGG	2 cut(s)	845, 1125
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	2 cut(s)	843, 1123
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	55, 642
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	3 cut(s)	279, 806, 895
BstYI	RGATCY	3 cut(s)	279, 806, 895
BsuRI	GGCC	3 cut(s)	5, 480, 732
BtgI	CCRYGG	3 cut(s)	249, 481, 727
BtsCI	GGATG	3 cut(s)	574, 763, 907
BtsIMutI	CAGTG	4 cut(s)	470, 556, 796, 908
CaiI	CAGNNNCTG	1 cut(s)	472
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	4, 246, 1058
Cfr42I	CCGCGG	1 cut(s)	730
CseI	GACGC	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	1123
DdeI	CTNAG	1 cut(s)	993
DrdI	GACNNNNNNGTC	2 cut(s)	554, 785
DriI	GACNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	2 cut(s)	554, 785
EaeI	YGGCCR	2 cut(s)	478, 730
Eam1104I	CTCTTC	1 cut(s)	311
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	5 cut(s)	249, 481, 669, 1084, 1093
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	1074
Eco47I	GGWCC	2 cut(s)	246, 1058
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	1077
EcoRII	CCWGG	2 cut(s)	843, 1123
EcoT14I	CCWWGG	5 cut(s)	249, 481, 669, 1084, 1093
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	5 cut(s)	249, 481, 669, 1084, 1093
FalI	AAGNNNNNCTT	2 cut(s)	1077, 1109
FaqI	GGGAC	2 cut(s)	203, 386
FauI	CCCGC	1 cut(s)	523
FauNDI	CATATG	1 cut(s)	921
FbaI	TGATCA	3 cut(s)	232, 268, 604
Fnu4HI	GCNGC	3 cut(s)	69, 656, 730
FokI	GGATG	3 cut(s)	581, 750, 894
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	69, 656, 730
FspBI	CTAG	4 cut(s)	338, 426, 573, 755
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	69, 656, 730
GsuI	CTGGAG	1 cut(s)	884
HaeIII	GGCC	3 cut(s)	5, 480, 732
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	6 cut(s)	31, 197, 220, 347, 362, 997
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	4 cut(s)	206, 278, 299, 347
Hpy166II	GTNNAC	2 cut(s)	180, 505
Hpy188I	TCNGA	4 cut(s)	390, 418, 738, 996
Hpy188III	TCNNGA	6 cut(s)	230, 272, 371, 496, 1079, 1101
Hpy8I	GTNNAC	2 cut(s)	180, 505
HpyAV	CCTTC	3 cut(s)	117, 147, 703
HpyCH4III	ACNGT	5 cut(s)	194, 453, 551, 564, 875
HpyCH4V	TGCA	3 cut(s)	622, 863, 966
HpyF10VI	GCNNNNNNNGC	2 cut(s)	829, 945
HpyF3I	CTNAG	1 cut(s)	993
Hsp92I	GRCGYC	1 cut(s)	148
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	3 cut(s)	232, 268, 604
KspI	CCGCGG	1 cut(s)	730
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	2 cut(s)	55, 642
LweI	GCATC	3 cut(s)	559, 772, 916
MabI	ACCWGGT	1 cut(s)	1123
MaeI	CTAG	4 cut(s)	338, 426, 573, 755
MaeIII	GTNAC	7 cut(s)	320, 576, 647, 745, 835, 875, 1022
MboII	GAAGA	4 cut(s)	36, 102, 328, 788
MflI	RGATCY	3 cut(s)	279, 806, 895
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	8 cut(s)	94, 212, 394, 613, 852, 1006, 1036, 1134
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	4 cut(s)	368, 467, 1090, 1111
MnlI	CCTC	6 cut(s)	138, 210, 290, 693, 777, 1097
MroXI	GAANNNNTTC	2 cut(s)	40, 366
MseI	TTAA	6 cut(s)	51, 204, 330, 432, 684, 1144
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	845, 1125
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	2 cut(s)	845, 1125
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	829, 945
NcoI	CCATGG	2 cut(s)	249, 481
NdeI	CATATG	1 cut(s)	921
NlaIV	GGNNCC	6 cut(s)	455, 512, 638, 808, 1090, 1114
NmuCI	GTSAC	4 cut(s)	576, 745, 835, 1022
NspI	RCATGY	1 cut(s)	836
PaeR7I	CTCGAG	1 cut(s)	1077
PagI	TCATGA	1 cut(s)	229
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	2 cut(s)	40, 366
PfeI	GAWTC	5 cut(s)	31, 220, 347, 362, 997
PflMI	CCANNNNNTGG	3 cut(s)	255, 960, 1055
PkrI	GCNGC	3 cut(s)	70, 657, 731
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PshBI	ATTAAT	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	843, 1123
PspGI	CCWGG	2 cut(s)	843, 1123
PspN4I	GGNNCC	6 cut(s)	455, 512, 638, 808, 1090, 1114
PspPI	GGNCC	3 cut(s)	4, 246, 1058
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	3 cut(s)	279, 806, 895
SacII	CCGCGG	1 cut(s)	730
SaqAI	TTAA	6 cut(s)	51, 204, 330, 432, 684, 1144
SatI	GCNGC	3 cut(s)	69, 656, 730
Sau96I	GGNCC	3 cut(s)	4, 246, 1058
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	845, 1125
SduI	GDGCHC	1 cut(s)	106
SexAI	ACCWGGT	1 cut(s)	1123
SfaNI	GCATC	3 cut(s)	559, 772, 916
Sfr274I	CTCGAG	1 cut(s)	1077
Sfr303I	CCGCGG	1 cut(s)	730
SgrBI	CCGCGG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	246, 1058
SlaI	CTCGAG	1 cut(s)	1077
SmlI	CTYRAG	3 cut(s)	376, 697, 1077
SmoI	CTYRAG	3 cut(s)	376, 697, 1077
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	8 cut(s)	94, 212, 394, 613, 852, 1006, 1036, 1134
SsiI	CCGC	4 cut(s)	516, 727, 729, 1139
SspMI	CTAG	4 cut(s)	338, 426, 573, 755
StyD4I	CCNGG	2 cut(s)	843, 1123
StyI	CCWWGG	5 cut(s)	249, 481, 669, 1084, 1093
TaaI	ACNGT	5 cut(s)	194, 453, 551, 564, 875
TaqI	TCGA	5 cut(s)	34, 47, 113, 121, 1078
TasI	AATT	8 cut(s)	94, 212, 394, 613, 852, 1006, 1036, 1134
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	5 cut(s)	31, 220, 347, 362, 997
Tru1I	TTAA	6 cut(s)	51, 204, 330, 432, 684, 1144
Tru9I	TTAA	6 cut(s)	51, 204, 330, 432, 684, 1144
TscAI	CASTG	4 cut(s)	477, 556, 796, 908
TseFI	GTSAC	4 cut(s)	576, 745, 835, 1022
TseI	GCWGC	2 cut(s)	68, 655
Tsp45I	GTSAC	4 cut(s)	576, 745, 835, 1022
TspDTI	ATGAA	5 cut(s)	225, 360, 399, 722, 1043
TspRI	CASTG	4 cut(s)	477, 556, 796, 908
Van91I	CCANNNNNTGG	3 cut(s)	255, 960, 1055
VpaK11BI	GGWCC	2 cut(s)	246, 1058
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	852
XceI	RCATGY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	2 cut(s)	824, 1091
XhoI	CTCGAG	1 cut(s)	1077
XmnI	GAANNNNTTC	2 cut(s)	40, 366
XspI	CTAG	4 cut(s)	338, 426, 573, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.