Rh5DG545800

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000356
Physical Location & Seq
Reverse (-)
83907707 .. 83908012
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG545800.1

Sequence Viewer

Length: 306 bp
ATGAATAATGTGCTAGTCAATGAATCTGCTCACCAGGAATCGGTTCGGGACTTAAGCTTCTATAGGAGTAATTTGAAGTTTTGTTCATGTTTGGATGATACTACTGTTGAAATCGGGGATTTTGAACGGTGCCAACAAGAGCAGACATTGACCGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCTCTTGTTTCCTCTGCTCATCTTCTACTTGCTATTCAATCTCTCCTGTGCAGCTGAAGCTGAAGATGAAAAAAATGTCACCAACATTGGAGCAATCATTGATGTTACTATTGGTACTTGA

Protein Analysis

101

Amino Acids

11.42

Weight (kDa)

4.34

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 261, 267
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 40
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 4 cut(s) 76, 110, 125, 223
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 3 cut(s) 57, 239, 245
AluI AGCT 3 cut(s) 57, 239, 245
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 23, 256
BaeI ACNNNNGTAYC 2 cut(s) 90, 123
BanI GGYRCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 157
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 106, 129
Bst6I CTCTTC 1 cut(s) 167
BstAFI CTTAAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 152
Csp6I GTAC 1 cut(s) 300
CviAII CATG 2 cut(s) 87, 158
CviJI RGCY 5 cut(s) 57, 156, 187, 239, 245
CviKI_1 RGCY 5 cut(s) 57, 156, 187, 239, 245
CviQI GTAC 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 261, 267
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 90, 161
FaiI YATR 3 cut(s) 63, 88, 159
FaqI GGGAC 1 cut(s) 62
FatI CATG 2 cut(s) 86, 157
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 90, 161
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 2 cut(s) 23, 38
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 23, 256
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 106, 129
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 90, 161
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 5 cut(s) 20, 47, 166, 169, 244
Lsp1109I GCAGC 1 cut(s) 248
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 262, 289
MboII GAAGA 3 cut(s) 184, 199, 260
MluCI AATT 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 157
NlaIII CATG 2 cut(s) 90, 161
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 23, 38
PkrI GCNGC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 35
SetI ASST 3 cut(s) 59, 241, 247
SfcI CTRYAG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 106, 129
TasI AATT 1 cut(s) 70
TfiI GAWTC 2 cut(s) 23, 38
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 4 cut(s) 17, 36, 75, 267
Vha464I CTTAAG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.