Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

24509281 .. 24510525

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCCCCAGAGTATCACCACCACCCCCACGCCGACGCCGCTTGTGGTCCTCCTCAGGTCGATGATTTTGGTGCAATCAGGAATACAAAGCAGACCCAGACCCAGACCCAGAGAAGGACGGTTGATTATACTGGTTCTGTCGTCCGATACACACAGAATCGAAAGTGGTCCTCCTCAGATCCGTTGCCGGCGGCTGCCTGTTCAGATAACCCATTTGCTGCACAGTTTGTGCACTCTTGTACAAATTACAGAGCCCGTCCTTCTTCGATTAATCGAGTTTTATGGACACCTTCTGGGAGGCGTCTTATCACAGGCTCTCAAAAAGGGGAGGCTCATGATCATGCAATCTGGTGTATGGCGTGGAGTTTTGATGATGAAGATTGGATCTCTGGTGATGATGGAGGCACAATCAGGTATTGGAAGAGTAACATGAATAATGTGCTAGTCAATGAATCTGCTCACCAAGAATCGGTTAGGGACTTGAGCTTTTGTAGGAGTAATTTGAAGTTTTGTTCATGTTCGGATGATGCTACTGTTAAAATCTGGGATTTTGAACGGTGCCAACAAGAGCAGACATTGACCGTCCATGGTTGGAATGTCAAGAGTGTTGACTGGCACCCAACAAAGTCTCTAATAGCTTCGGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGTCAGGGAGAGAACTTTGTTCATTTTATGATCACAAAAATGGGGTGCATTCTGTTAAGTGGAACCGAAATGGTAACTGGCTGCTAACTGCTTCCAAGGATCAAGTCATTAAGCTTTACGACTTGAGGGCTATGAAGGAACTTGAATCTTTTTGCGGCCACCGGAACCAAGTGACTGCTCTAGCTTGGCATCCTCTTAGTGAAGAATATTTTGTCAGTGGGAGTAGTGATGGATCCATTCTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAATTCCTAATGCACACAGTAACAGTTACAATAATAGTGTCTGGGATCTTCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGTAGCAATGATCGCACCACAAAGTTTTGGTGCAGAACAGGAGATAAATCTAAAATCAGTCAGAATCAAAGTATTGGTAATCAAAATTCTGCTTTTGCTTGTCACATGAACAGTAATTTTCCTTTTCCATTTCATGGACCACCAACTATTGCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

398

Amino Acids

45.04

Weight (kDa)

7.05

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	89 - 222	2e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	100 - 190	3.1e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	108 - 232	1.6e-15	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	108 - 276	8.6e-27	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	110 - 251	4.7e-23	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	110 - 357	2e-12	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	110 - 194	3.3e-11	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	111 - 205	1.3e-11	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	112 - 230	2.6e-19	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	112 - 226	7.2e-11	WDR3 second beta-propeller domain
EIF3I	PF24805	113 - 191	4.1e-07	EIF3I
Beta-prop_TEP1_2nd	PF25047	117 - 288	2.2e-12	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	118 - 232	4.8e-09	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	140 - 277	1e-16	G protein beta WD-40 repeat protein
WDR55	PF24796	144 - 272	6.2e-16	WDR55
Beta-prop_Aladin	PF25460	145 - 272	6.9e-06	Aladin seven-bladed propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	147 - 294	2.1e-18	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	152 - 183	9.2e-06	WD domain, G-beta repeat
Beta-prop_SCAP	PF24017	153 - 267	7.7e-06	SCAP Beta-propeller
Beta-prop_EML_2	PF23414	166 - 311	1.2e-21	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	169 - 292	1.6e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	170 - 257	2.4e-08	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st	PF25173	175 - 309	5.8e-29	WDR3 first beta-propeller domain
Beta-prop_IFT140_1st	PF23383	176 - 263	1.7e-06	IFT140 first beta-propeller
WD40	PF00400	189 - 225	4e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	193 - 356	3.7e-28	WDR5 beta-propeller domain
EIF3I	PF24805	194 - 281	2e-09	EIF3I
Beta-prop_EML	PF23409	196 - 299	2.7e-08	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	200 - 374	7.6e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	200 - 312	4.7e-12	WDR3 second beta-propeller domain
Beta-prop_WDR19_1st	PF23389	203 - 365	2.3e-07	WDR19 first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	211 - 273	1e-05	CAF1B/HIR1 beta-propeller domain
Beta-prop_EIPR1	PF23609	227 - 356	1.8e-06	EIPR1 beta-propeller
WD40_CDC20-Fz	PF24807	230 - 372	3e-19	CDC20/Fizzy WD40 domain
WD40	PF00400	230 - 267	6.9e-08	WD domain, G-beta repeat
WDR55	PF24796	231 - 316	1.8e-07	WDR55
Beta-prop_DCAF4	PF23761	236 - 299	6.3e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	238 - 369	2.3e-22	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	242 - 356	2e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	242 - 345	1.2e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	274 - 358	1.2e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	659
AccB1I	GGYRCC	2 cut(s)	558, 615
AccB7I	CCANNNNNTGG	1 cut(s)	1172
AciI	CCGC	3 cut(s)	39, 191, 834
AclWI	GGATC	6 cut(s)	173, 392, 786, 906, 919, 1008
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	2 cut(s)	957, 1123
AcuI	CTGAAG	1 cut(s)	989
AcyI	GRCGYC	2 cut(s)	36, 301
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	3 cut(s)	114, 469, 1172
AgsI	TTSAA	4 cut(s)	505, 554, 824, 956
AjnI	CCWGG	1 cut(s)	948
AluBI	AGCT	4 cut(s)	486, 638, 793, 863
AluI	AGCT	4 cut(s)	486, 638, 793, 863
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	633
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	6 cut(s)	173, 392, 786, 906, 919, 1008
AoxI	GGCC	2 cut(s)	3, 835
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	3 cut(s)	194, 218, 760
ApoI	RAATTY	2 cut(s)	957, 1123
AseI	ATTAAT	1 cut(s)	270
AspS9I	GGNCC	4 cut(s)	4, 47, 168, 1175
AsuHPI	GGTGA	3 cut(s)	8, 404, 452
AvaII	GGWCC	3 cut(s)	47, 168, 1175
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	911
BanI	GGYRCC	2 cut(s)	558, 615
BanII	GRGCYC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	181, 205, 747
BccI	CCATC	2 cut(s)	392, 902
BciT130I	CCWGG	1 cut(s)	950
BclI	TGATCA	2 cut(s)	337, 709
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	3 cut(s)	443, 678, 860
BisI	GCNGC	6 cut(s)	39, 192, 195, 219, 761, 835
BlsI	GCNGC	6 cut(s)	40, 193, 196, 220, 762, 836
Bme1390I	CCNGG	1 cut(s)	950
Bme18I	GGWCC	3 cut(s)	47, 168, 1175
BmgT120I	GGNCC	4 cut(s)	4, 47, 168, 1175
BmiI	GGNNCC	6 cut(s)	6, 560, 617, 743, 845, 913
BmrFI	CCNGG	1 cut(s)	950
BmsI	GCATC	4 cut(s)	517, 664, 877, 1021
BpuEI	CTTGAG	2 cut(s)	502, 823
BsaHI	GRCGYC	2 cut(s)	36, 301
BsaJI	CCNNGG	3 cut(s)	586, 774, 948
BsaWI	WCCGGW	1 cut(s)	840
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 469, 1172
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	136, 617, 761
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	1051
BseBI	CCWGG	1 cut(s)	950
BseDI	CCNNGG	3 cut(s)	586, 774, 948
BseGI	GGATG	4 cut(s)	529, 679, 868, 1012
BseLI	CCNNNNNNNGG	3 cut(s)	114, 469, 1172
BseMI	GCAATG	1 cut(s)	1051
BseMII	CTCAG	2 cut(s)	68, 189
BseNI	ACTGG	3 cut(s)	136, 617, 761
BseRI	GAGGAG	2 cut(s)	42, 163
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	181, 205, 747
BsgI	GTGCAG	2 cut(s)	204, 1090
BshFI	GGCC	2 cut(s)	5, 837
BshNI	GGYRCC	2 cut(s)	558, 615
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	188, 841
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	114, 469, 1172
BsmAI	GTCTC	1 cut(s)	633
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	5, 837
Bsp1286I	GDGCHC	2 cut(s)	234, 256
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	3 cut(s)	39, 191, 834
BspANI	GGCC	2 cut(s)	5, 837
BspCNI	CTCAG	2 cut(s)	67, 188
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	6 cut(s)	6, 560, 617, 743, 845, 913
BspPI	GGATC	6 cut(s)	173, 392, 786, 906, 919, 1008
BspT107I	GGYRCC	2 cut(s)	558, 615
BsrDI	GCAATG	1 cut(s)	1051
BsrFI	RCCGGY	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	3 cut(s)	136, 617, 761
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	586, 774, 948
BssMI	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
BssNI	GRCGYC	2 cut(s)	36, 301
BssT1I	CCWWGG	2 cut(s)	586, 774
Bst2UI	CCWGG	1 cut(s)	950
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	36, 301
BstAUI	TGTACA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	54, 175, 875
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	4 cut(s)	529, 679, 868, 1012
BstKTI	GATC	8 cut(s)	181, 340, 387, 712, 781, 914, 1003, 1051
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 934, 1050
BstNI	CCWGG	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	181, 205, 747
BstX2I	RGATCY	4 cut(s)	178, 384, 911, 1000
BstYI	RGATCY	4 cut(s)	178, 384, 911, 1000
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	5, 837
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	4 cut(s)	529, 679, 868, 1012
BtsIMutI	CAGTG	3 cut(s)	661, 901, 1013
Cac8I	GCNNGC	1 cut(s)	189
CciI	TCATGA	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	4, 47, 168, 1175
CseI	GACGC	2 cut(s)	44, 290
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	8 cut(s)	335, 341, 430, 516, 587, 938, 1144, 1172
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	54, 175, 875
DpnI	GATC	8 cut(s)	180, 339, 386, 711, 780, 913, 1002, 1050
DpnII	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
DrdI	GACNNNNNNGTC	1 cut(s)	659
DseDI	GACNNNNNNGTC	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	586, 774
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	47, 168, 1175
Eco57I	CTGAAG	1 cut(s)	989
Eco81I	CCTNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	948
EcoT14I	CCWWGG	2 cut(s)	586, 774
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	586, 774
FaeI	CATG	8 cut(s)	338, 344, 433, 519, 590, 941, 1147, 1175
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	8 cut(s)	334, 340, 429, 515, 586, 937, 1143, 1171
FauNDI	CATATG	1 cut(s)	1026
FbaI	TGATCA	2 cut(s)	337, 709
Fnu4HI	GCNGC	6 cut(s)	39, 192, 195, 219, 761, 835
FokI	GGATG	4 cut(s)	536, 686, 855, 999
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	6 cut(s)	39, 192, 195, 219, 761, 835
FspBI	CTAG	3 cut(s)	443, 678, 860
GluI	GCNGC	6 cut(s)	39, 192, 195, 219, 761, 835
HaeIII	GGCC	2 cut(s)	5, 837
HapII	CCGG	2 cut(s)	188, 841
HgaI	GACGC	2 cut(s)	44, 290
Hin1I	GRCGYC	2 cut(s)	36, 301
Hin1II	CATG	8 cut(s)	338, 344, 433, 519, 590, 941, 1147, 1175
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	5 cut(s)	157, 452, 467, 824, 1102
HpaII	CCGG	2 cut(s)	188, 841
HphI	GGTGA	3 cut(s)	8, 404, 452
Hpy166II	GTNNAC	2 cut(s)	232, 610
Hpy188I	TCNGA	5 cut(s)	146, 178, 205, 523, 1101
Hpy188III	TCNNGA	3 cut(s)	79, 335, 601
Hpy8I	GTNNAC	2 cut(s)	232, 610
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	108, 270, 300, 808
HpyCH4V	TGCA	7 cut(s)	74, 221, 232, 344, 727, 968, 1071
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 934, 1050
HpyF3I	CTNAG	3 cut(s)	54, 175, 875
Hsp92I	GRCGYC	2 cut(s)	36, 301
Hsp92II	CATG	8 cut(s)	338, 344, 433, 519, 590, 941, 1147, 1175
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Ksp22I	TGATCA	2 cut(s)	337, 709
Kzo9I	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
Lsp1109I	GCAGC	3 cut(s)	181, 205, 747
LweI	GCATC	4 cut(s)	517, 664, 877, 1021
MaeI	CTAG	3 cut(s)	443, 678, 860
MaeIII	GTNAC	6 cut(s)	425, 752, 850, 974, 980, 1139
MalI	GATC	8 cut(s)	180, 339, 386, 711, 780, 913, 1002, 1050
MboI	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
MboII	GAAGA	5 cut(s)	255, 389, 433, 893, 995
MflI	RGATCY	4 cut(s)	178, 384, 911, 1000
MhlI	GDGCHC	2 cut(s)	234, 256
MluCI	AATT	5 cut(s)	244, 499, 957, 1123, 1153
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	9 cut(s)	60, 63, 181, 184, 291, 322, 395, 798, 882
MroNI	GCCGGC	1 cut(s)	187
MseI	TTAA	4 cut(s)	270, 537, 735, 789
MslI	CAYNNNNRTG	2 cut(s)	339, 717
MspI	CCGG	2 cut(s)	188, 841
MspR9I	CCNGG	1 cut(s)	950
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	3 cut(s)	38, 934, 1050
NaeI	GCCGGC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	586
NdeI	CATATG	1 cut(s)	1026
NdeII	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	8 cut(s)	338, 344, 433, 519, 590, 941, 1147, 1175
NlaIV	GGNNCC	6 cut(s)	6, 560, 617, 743, 845, 913
NmuCI	GTSAC	2 cut(s)	850, 1139
PagI	TCATGA	1 cut(s)	334
PctI	GAATGC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	157, 452, 467, 824, 1102
PflMI	CCANNNNNTGG	1 cut(s)	1172
PkrI	GCNGC	6 cut(s)	40, 193, 196, 220, 762, 836
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	6 cut(s)	6, 560, 617, 743, 845, 913
PspPI	GGNCC	4 cut(s)	4, 47, 168, 1175
PsuI	RGATCY	4 cut(s)	178, 384, 911, 1000
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	2 cut(s)	339, 717
SaqAI	TTAA	4 cut(s)	270, 537, 735, 789
SatI	GCNGC	6 cut(s)	39, 192, 195, 219, 761, 835
Sau3AI	GATC	8 cut(s)	178, 337, 384, 709, 778, 911, 1000, 1048
Sau96I	GGNCC	4 cut(s)	4, 47, 168, 1175
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	2 cut(s)	234, 256
SetI	ASST	9 cut(s)	60, 292, 416, 488, 640, 683, 795, 865, 954
SfaNI	GCATC	4 cut(s)	517, 664, 877, 1021
SinI	GGWCC	3 cut(s)	47, 168, 1175
SmiMI	CAYNNNNRTG	2 cut(s)	339, 717
SmlI	CTYRAG	2 cut(s)	481, 802
SmoI	CTYRAG	2 cut(s)	481, 802
Sse9I	AATT	5 cut(s)	244, 499, 957, 1123, 1153
SsiI	CCGC	3 cut(s)	39, 191, 834
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	3 cut(s)	443, 678, 860
StyD4I	CCNGG	1 cut(s)	948
StyI	CCWWGG	2 cut(s)	586, 774
TaqI	TCGA	4 cut(s)	60, 160, 266, 274
TasI	AATT	5 cut(s)	244, 499, 957, 1123, 1153
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	3 cut(s)	41, 194, 837
TfiI	GAWTC	5 cut(s)	157, 452, 467, 824, 1102
Tru1I	TTAA	4 cut(s)	270, 537, 735, 789
Tru9I	TTAA	4 cut(s)	270, 537, 735, 789
TscAI	CASTG	3 cut(s)	661, 901, 1013
TseFI	GTSAC	2 cut(s)	850, 1139
TseI	GCWGC	3 cut(s)	194, 218, 760
Tsp45I	GTSAC	2 cut(s)	850, 1139
TspDTI	ATGAA	9 cut(s)	390, 446, 465, 504, 690, 827, 954, 1160, 1160
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	661, 901, 1013
Van91I	CCANNNNNTGG	1 cut(s)	1172
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	47, 168, 1175
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	2 cut(s)	957, 1123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	929
XspI	CTAG	3 cut(s)	443, 678, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.