Rmu_sc0025336.1_g000001

Pre-mRNA 3' end processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025336.1
OG0000356
Physical Location & Seq
Reverse (-)
2759 .. 3324
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025336.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atggttttggtgcaatcaggaatagaaagcagacccagacccagacccagacccagagaaggacagttgattatactggttctgtcgtccgatacacacataattgaaagtggtcctcctcagatccgttgccggcggctgcctattcagataacccatttgctgcacagtttgtgcactcctgctcgtgatcatgcaatcaggtctatggcgtgttgttttgatgatgaggattggatctctggtgatgatggaggcacaatcaggtattggaagagtaacatgaataatgtgctagtcaatgaatctgctcaccaagaatcggttctggacttgagcttttgtaggagtaatttgaagttttgttcatgttcggatgatgctactgttaaaatctgggattttgaacggtgccaacaagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005847 GO:0005849 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006974 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0018130 GO:0019438 GO:0019953 GO:0022414 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032774 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044703 GO:0045184 GO:0046483 GO:0046907 GO:0048232 GO:0048609 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0097659 GO:1901360 GO:1901362 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
Collagen WD40

Protein Analysis

141

Amino Acids

16.11

Weight (kDa)

5.93

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 411
AciI CCGC 1 cut(s) 136
AclWI GGATC 2 cut(s) 118, 245
AfiI CCNNNNNNNGG 2 cut(s) 59, 322
AgsI TTSAA 3 cut(s) 107, 358, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw21I GWGCWC 1 cut(s) 179
Alw44I GTGCAC 1 cut(s) 175
AlwI GGATC 2 cut(s) 118, 245
ApaLI GTGCAC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 139, 163
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 257, 305
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 411
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 126, 150
BccI CCATC 1 cut(s) 245
BclI TGATCA 1 cut(s) 190
BfaI CTAG 1 cut(s) 296
BisI GCNGC 3 cut(s) 137, 140, 164
BlsI GCNGC 3 cut(s) 138, 141, 165
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 413
BmsI GCATC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 322
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 59, 322
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 2 cut(s) 126, 150
BsgI GTGCAG 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 59, 322
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 123, 190, 237
BspACI CCGC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 413
BspPI GGATC 2 cut(s) 118, 245
BspT107I GGYRCC 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 132
BssMI GATC 3 cut(s) 123, 190, 237
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst4CI ACNGT 4 cut(s) 66, 170, 388, 411
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 3 cut(s) 126, 193, 240
BstMBI GATC 3 cut(s) 123, 190, 237
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 126, 150
BstX2I RGATCY 2 cut(s) 123, 237
BstYI RGATCY 2 cut(s) 123, 237
BtsCI GGATG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 3 cut(s) 194, 283, 369
CviJI RGCY 2 cut(s) 139, 339
CviKI_1 RGCY 2 cut(s) 139, 339
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 125, 192, 239
DpnII GATC 3 cut(s) 123, 190, 237
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 113
FaeI CATG 3 cut(s) 197, 286, 372
FaiI YATR 6 cut(s) 74, 101, 195, 209, 284, 370
FatI CATG 3 cut(s) 193, 282, 368
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 137, 140, 164
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 3 cut(s) 137, 140, 164
FspBI CTAG 1 cut(s) 296
GluI GCNGC 3 cut(s) 137, 140, 164
HapII CCGG 1 cut(s) 133
Hin1II CATG 3 cut(s) 197, 286, 372
HinfI GANTC 2 cut(s) 305, 320
HpaII CCGG 1 cut(s) 133
HphI GGTGA 2 cut(s) 257, 305
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 4 cut(s) 91, 123, 150, 376
Hpy188III TCNNGA 3 cut(s) 18, 188, 329
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 4 cut(s) 66, 170, 388, 411
HpyCH4V TGCA 4 cut(s) 13, 166, 177, 197
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 3 cut(s) 197, 286, 372
KroI GCCGGC 1 cut(s) 132
KroNI GCCGGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 123, 190, 237
Lsp1109I GCAGC 2 cut(s) 126, 150
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 278
MalI GATC 3 cut(s) 125, 192, 239
MboI GATC 3 cut(s) 123, 190, 237
MboII GAAGA 1 cut(s) 286
MflI RGATCY 2 cut(s) 123, 237
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 102, 352
MnlI CCTC 4 cut(s) 126, 129, 223, 248
MroNI GCCGGC 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 390
MspI CCGG 1 cut(s) 133
NaeI GCCGGC 1 cut(s) 134
NdeII GATC 3 cut(s) 123, 190, 237
NgoMIV GCCGGC 1 cut(s) 132
NlaIII CATG 3 cut(s) 197, 286, 372
NlaIV GGNNCC 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 305, 320
PkrI GCNGC 3 cut(s) 138, 141, 165
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 2 cut(s) 123, 237
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 137, 140, 164
Sau3AI GATC 3 cut(s) 123, 190, 237
Sau96I GGNCC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 206, 269, 341
SfaNI GCATC 1 cut(s) 370
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 2 cut(s) 102, 352
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 296
TaaI ACNGT 4 cut(s) 66, 170, 388, 411
TasI AATT 2 cut(s) 102, 352
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 2 cut(s) 305, 320
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseI GCWGC 2 cut(s) 139, 163
TspDTI ATGAA 3 cut(s) 299, 318, 357
TspGWI ACGGA 1 cut(s) 116
VneI GTGCAC 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.