Rh3BG285200

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000356
Physical Location & Seq
Reverse (-)
28387600 .. 28389817
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG285200.1

Sequence Viewer

Length: 1158 bp
ATGGCTGATTACACCGGCTCTGTCGTCCGATACACACAGAATCGAAAGTGGTCCTCAGATCCGTTGCCGGCGGCTGCCTGTTCTTCGATTAACAACCCATTTGCTGCCGAGTTTGTGCACTCTTGTACAAATTACAGAGCCCGTGCTTCTTCGATCAATCGAGTTTTATGGACACCTTCTGGGAGGCGTCTTATTACAGGCTCTCAAAACGGGGAGTTCACTCTCTGGAATGGTGAGTCATTCAAACACGAATTGAGGATTCAGGCTCATGATCAACCAATCAGGTCCATGGCGTGGAGTTTTGATGATGAAGATTGGATCTCTGGTGATGATGGAGGCACAATCAGGTATTGGAAGAGTAACATGAGTAATGTGCTTGTCATTGAATCTGCTCACCATGAATCGGTTCGGGACTTGAGCTTCTGTCGGAGTAATTTGAAGTTTTGTTCATGTTCGGATGACACTAGTGTTAAAATCTGGGATTTTGAACGGTGCCAACAGGAGCAGACATTGACCGGCCATGGTTGGAATGTGACGAGTGTTGACTGGCACCCCACAAACTCTCTAATAGCTTCGGGTGGGAAAGACAGTGTCGTCAAACTGTGGGATGCTAGGTCACGGAGAGAACTCTGTTCGTTTTATGATCACAAAAATTGGGTGCATTCTGTCAAGTGGAACCGAAATGGTAACTGGCTGCTAACTGCTTCCAAGGATCATGTCATTAAGCTTTACGACTTGAGGGCTATGAAGGAACTTAAATCTTTCCGCGGCCATCAGAACCAAGTGACTGCTCTAGCTTGGCATCCTCTTACTCAAGACTATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGCCATGTAACTCCCCAGGTTGAAATTCCTAACGCACACACTAACAGTTACAATAATAATAGTGTGTGGGATCTCCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGCAGCAATGATCGCACCACCAAGTTTTGGTGCACAACAGCAGATAAATCTAAATTCAGTCAGAATCAAAGTAATTTTCCTTTTCCATTTCATGGACCACCAACTATTGCTACTCGAGACCAAGGAACCCTTGGTTCAGGAGGTGTTGGAACCATTATACCCGGTGTTGGAATTGCGGTTTAA

Protein Analysis

385

Amino Acids

43.51

Weight (kDa)

7.68

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 14 - 206 1.8e-22 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 43 - 206 1.5e-27 THOC3 beta-propeller domain
WDR55 PF24796 43 - 119 4.1e-06 WDR55
Beta-prop_WDR3_1st PF25173 46 - 181 8e-18 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 46 - 255 1.5e-19 G protein beta WD-40 repeat protein
Beta-prop_IFT140_1st PF23383 47 - 127 4.5e-09 IFT140 first beta-propeller
Beta-prop_WDR5 PF25175 48 - 136 4.8e-08 WDR5 beta-propeller domain
Beta-prop_EIPR1 PF23609 51 - 202 9e-08 EIPR1 beta-propeller
WD40_Prp19 PF24814 51 - 255 5.4e-32 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 53 - 210 1.5e-16 WDHD1 first WD40 domain
EIF3I PF24805 83 - 169 2.5e-07 EIF3I
WD40_MABP1-WDR62_2nd PF24782 94 - 261 5.6e-12 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 96 - 265 1.6e-16 TEP-1 second beta-propeller
Beta-prop_Aladin PF25460 119 - 250 1e-07 Aladin seven-bladed propeller
WDR55 PF24796 126 - 250 2e-16 WDR55
Beta-prop_CAF1B_HIR1 PF24105 128 - 207 3.4e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 129 - 289 1.4e-18 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 130 - 204 2.2e-10 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 131 - 245 5e-26 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 144 - 291 2.6e-21 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 148 - 234 1.2e-07 WDR90/POC16, second beta-propeller
Beta-prop_IFT140_1st PF23383 154 - 241 3.9e-06 IFT140 first beta-propeller
Beta-prop_WDR3_1st PF25173 156 - 287 2e-28 WDR3 first beta-propeller domain
WD40 PF00400 166 - 203 1.1e-10 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 171 - 250 5.9e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML PF23409 172 - 277 1e-08 Echinoderm microtubule-associated protein first beta-propeller
EIF3I PF24805 176 - 257 4e-10 EIF3I
WD40_MABP1-WDR62_2nd PF24782 181 - 343 1.3e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 193 - 336 8.4e-08 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 198 - 340 2.9e-20 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 210 - 339 9.2e-10 WDR3 second beta-propeller domain
WD40 PF00400 210 - 245 8e-08 WD domain, G-beta repeat
Beta-prop_DCAF4 PF23761 211 - 269 4.7e-06 DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_WDR5 PF25175 213 - 338 5.6e-18 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 216 - 346 1.2e-23 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 219 - 335 3.5e-06 Aladin seven-bladed propeller
WD40_WDHD1_1st PF24817 220 - 329 7.2e-13 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 232 - 327 5.9e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 250 - 287 6.2e-06 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 252 - 352 2.5e-06 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 252 - 340 3.9e-09 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 593, 824
AccB1I GGYRCC 2 cut(s) 492, 549
AccB7I CCANNNNNTGG 3 cut(s) 294, 1002, 1067
AccII CGCG 1 cut(s) 768
AciI CCGC 4 cut(s) 71, 766, 768, 1151
AclWI GGATC 6 cut(s) 53, 326, 720, 840, 853, 945
AcoI YGGCCR 3 cut(s) 517, 769, 868
AcsI RAATTY 2 cut(s) 891, 1028
AcyI GRCGYC 1 cut(s) 187
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 5 cut(s) 294, 403, 1002, 1067, 1142
AgsI TTSAA 5 cut(s) 244, 386, 439, 488, 890
AhlI ACTAGT 1 cut(s) 464
AjnI CCWGG 1 cut(s) 882
AluBI AGCT 4 cut(s) 420, 572, 727, 797
AluI AGCT 4 cut(s) 420, 572, 727, 797
Alw21I GWGCWC 2 cut(s) 120, 1010
Alw26I GTCTC 1 cut(s) 1086
Alw44I GTGCAC 2 cut(s) 116, 1006
AlwI GGATC 6 cut(s) 53, 326, 720, 840, 853, 945
Ama87I CYCGRG 1 cut(s) 1089
AoxI GGCC 3 cut(s) 517, 769, 868
ApaLI GTGCAC 2 cut(s) 116, 1006
ApeKI GCWGC 4 cut(s) 74, 104, 694, 978
ApoI RAATTY 2 cut(s) 891, 1028
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 51, 285, 1070
AsuC2I CCSGG 1 cut(s) 1137
AsuHPI GGTGA 3 cut(s) 245, 338, 386
AvaI CYCGRG 1 cut(s) 1089
AvaII GGWCC 3 cut(s) 51, 285, 1070
BaeGI GKGCMC 2 cut(s) 120, 1010
BalI TGGCCA 1 cut(s) 870
BamHI GGATCC 1 cut(s) 845
BanI GGYRCC 2 cut(s) 492, 549
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 120, 1010
BbvI GCAGC 4 cut(s) 61, 91, 681, 990
BccI CCATC 3 cut(s) 326, 780, 836
BciT130I CCWGG 1 cut(s) 884
BclI TGATCA 2 cut(s) 271, 643
BcnI CCSGG 1 cut(s) 1137
BcoDI GTCTC 1 cut(s) 1086
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 3 cut(s) 465, 612, 794
BisI GCNGC 6 cut(s) 72, 75, 105, 695, 769, 979
BlsI GCNGC 6 cut(s) 73, 76, 106, 696, 770, 980
Bme1390I CCNGG 2 cut(s) 884, 1137
Bme18I GGWCC 3 cut(s) 51, 285, 1070
BmeT110I CYCGRG 1 cut(s) 1089
BmgT120I GGNCC 3 cut(s) 51, 285, 1070
BmiI GGNNCC 6 cut(s) 494, 551, 677, 847, 1102, 1126
BmrFI CCNGG 2 cut(s) 884, 1137
BmsI GCATC 3 cut(s) 598, 811, 958
BpmI CTGGAG 1 cut(s) 926
BpuEI CTTGAG 3 cut(s) 436, 757, 798
BpuMI CCSGG 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 1086
BsaJI CCNNGG 7 cut(s) 288, 520, 708, 766, 882, 1096, 1105
Bsc4I CCNNNNNNNGG 5 cut(s) 294, 403, 1002, 1067, 1142
Bse118I RCCGGY 3 cut(s) 14, 67, 515
Bse1I ACTGG 3 cut(s) 551, 695, 943
Bse3DI GCAATG 1 cut(s) 988
BseBI CCWGG 1 cut(s) 884
BseDI CCNNGG 7 cut(s) 288, 520, 708, 766, 882, 1096, 1105
BseGI GGATG 4 cut(s) 463, 613, 802, 949
BseLI CCNNNNNNNGG 5 cut(s) 294, 403, 1002, 1067, 1142
BseMI GCAATG 1 cut(s) 988
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 3 cut(s) 551, 695, 943
BseSI GKGCMC 2 cut(s) 120, 1010
BseXI GCAGC 4 cut(s) 61, 91, 681, 990
Bsh1236I CGCG 1 cut(s) 768
BshFI GGCC 3 cut(s) 519, 771, 870
BshNI GGYRCC 2 cut(s) 492, 549
BsiHKAI GWGCWC 2 cut(s) 120, 1010
BsiHKCI CYCGRG 1 cut(s) 1089
BsiSI CCGG 4 cut(s) 15, 68, 516, 1137
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 5 cut(s) 294, 403, 1002, 1067, 1142
BsmAI GTCTC 1 cut(s) 1086
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 3 cut(s) 519, 771, 870
Bso31I GGTCTC 1 cut(s) 1086
BsoBI CYCGRG 1 cut(s) 1089
Bsp1286I GDGCHC 3 cut(s) 120, 142, 1010
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
Bsp19I CCATGG 2 cut(s) 288, 520
BspACI CCGC 4 cut(s) 71, 766, 768, 1151
BspANI GGCC 3 cut(s) 519, 771, 870
BspCNI CTCAG 1 cut(s) 68
BspFNI CGCG 1 cut(s) 768
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 6 cut(s) 494, 551, 677, 847, 1102, 1126
BspPI GGATC 6 cut(s) 53, 326, 720, 840, 853, 945
BspT107I GGYRCC 2 cut(s) 492, 549
BspTNI GGTCTC 1 cut(s) 1086
BsrDI GCAATG 1 cut(s) 988
BsrFI RCCGGY 3 cut(s) 14, 67, 515
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 3 cut(s) 551, 695, 943
BssAI RCCGGY 3 cut(s) 14, 67, 515
BssECI CCNNGG 7 cut(s) 288, 520, 708, 766, 882, 1096, 1105
BssMI GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
BssNI GRCGYC 1 cut(s) 187
BssT1I CCWWGG 5 cut(s) 288, 520, 708, 1096, 1105
Bst2UI CCWGG 1 cut(s) 884
Bst4CI ACNGT 4 cut(s) 492, 590, 603, 914
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 55
BstDSI CCRYGG 3 cut(s) 288, 520, 766
BstF5I GGATG 4 cut(s) 463, 613, 802, 949
BstFNI CGCG 1 cut(s) 768
BstKTI GATC 9 cut(s) 61, 156, 274, 321, 646, 715, 848, 940, 988
BstMAI GTCTC 1 cut(s) 1086
BstMBI GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
BstMWI GCNNNNNNNGC 1 cut(s) 987
BstNI CCWGG 1 cut(s) 884
BstSCI CCNGG 2 cut(s) 882, 1135
BstSLI GKGCMC 2 cut(s) 120, 1010
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 4 cut(s) 61, 91, 681, 990
BstX2I RGATCY 4 cut(s) 58, 318, 845, 937
BstYI RGATCY 4 cut(s) 58, 318, 845, 937
BsuRI GGCC 3 cut(s) 519, 771, 870
BtgI CCRYGG 3 cut(s) 288, 520, 766
BtsCI GGATG 4 cut(s) 463, 613, 802, 949
BtsIMutI CAGTG 3 cut(s) 595, 835, 950
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 268
Cfr10I RCCGGY 3 cut(s) 14, 67, 515
Cfr13I GGNCC 3 cut(s) 51, 285, 1070
Cfr42I CCGCGG 1 cut(s) 769
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 126
CviAII CATG 9 cut(s) 269, 289, 364, 398, 450, 521, 716, 872, 1067
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 55
DpnI GATC 9 cut(s) 60, 155, 273, 320, 645, 714, 847, 939, 987
DpnII GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
DrdI GACNNNNNNGTC 2 cut(s) 593, 824
DseDI GACNNNNNNGTC 2 cut(s) 593, 824
EaeI YGGCCR 3 cut(s) 517, 769, 868
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 5 cut(s) 288, 520, 708, 1096, 1105
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 1086
Eco47I GGWCC 3 cut(s) 51, 285, 1070
Eco88I CYCGRG 1 cut(s) 1089
EcoRII CCWGG 1 cut(s) 882
EcoT14I CCWWGG 5 cut(s) 288, 520, 708, 1096, 1105
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 5 cut(s) 288, 520, 708, 1096, 1105
FaeI CATG 9 cut(s) 272, 292, 367, 401, 453, 524, 719, 875, 1070
FalI AAGNNNNNCTT 2 cut(s) 1089, 1121
FaqI GGGAC 1 cut(s) 425
FatI CATG 9 cut(s) 268, 288, 363, 397, 449, 520, 715, 871, 1066
FauNDI CATATG 1 cut(s) 963
FbaI TGATCA 2 cut(s) 271, 643
Fnu4HI GCNGC 6 cut(s) 72, 75, 105, 695, 769, 979
FokI GGATG 4 cut(s) 470, 620, 789, 936
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 6 cut(s) 72, 75, 105, 695, 769, 979
FspBI CTAG 3 cut(s) 465, 612, 794
GluI GCNGC 6 cut(s) 72, 75, 105, 695, 769, 979
GsuI CTGGAG 1 cut(s) 926
HaeIII GGCC 3 cut(s) 519, 771, 870
HapII CCGG 4 cut(s) 15, 68, 516, 1137
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 9 cut(s) 272, 292, 367, 401, 453, 524, 719, 875, 1070
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 6 cut(s) 40, 236, 259, 386, 401, 1039
HpaII CCGG 4 cut(s) 15, 68, 516, 1137
HphI GGTGA 3 cut(s) 245, 338, 386
Hpy166II GTNNAC 4 cut(s) 118, 219, 544, 1008
Hpy188I TCNGA 6 cut(s) 29, 58, 429, 457, 777, 1038
Hpy188III TCNNGA 6 cut(s) 226, 269, 410, 815, 1091, 1113
Hpy8I GTNNAC 4 cut(s) 118, 219, 544, 1008
HpyAV CCTTC 2 cut(s) 186, 742
HpyCH4III ACNGT 4 cut(s) 492, 590, 603, 914
HpyCH4V TGCA 3 cut(s) 118, 661, 1008
HpyF10VI GCNNNNNNNGC 1 cut(s) 987
HpyF3I CTNAG 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 9 cut(s) 272, 292, 367, 401, 453, 524, 719, 875, 1070
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Ksp22I TGATCA 2 cut(s) 271, 643
KspI CCGCGG 1 cut(s) 769
Kzo9I GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
LmnI GCTCC 1 cut(s) 502
Lsp1109I GCAGC 4 cut(s) 61, 91, 681, 990
LweI GCATC 3 cut(s) 598, 811, 958
MaeI CTAG 3 cut(s) 465, 612, 794
MaeIII GTNAC 7 cut(s) 359, 532, 615, 686, 784, 874, 914
MalI GATC 9 cut(s) 60, 155, 273, 320, 645, 714, 847, 939, 987
MboI GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
MboII GAAGA 4 cut(s) 75, 141, 323, 367
MflI RGATCY 4 cut(s) 58, 318, 845, 937
MhlI GDGCHC 3 cut(s) 120, 142, 1010
MlsI TGGCCA 1 cut(s) 870
MluCI AATT 8 cut(s) 130, 251, 433, 652, 891, 1028, 1048, 1146
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 4 cut(s) 407, 506, 1102, 1123
MnlI CCTC 7 cut(s) 64, 177, 249, 329, 732, 816, 1109
Mox20I TGGCCA 1 cut(s) 870
MroNI GCCGGC 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 405
MscI TGGCCA 1 cut(s) 870
MseI TTAA 5 cut(s) 90, 471, 723, 756, 1156
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 768
MspI CCGG 4 cut(s) 15, 68, 516, 1137
MspR9I CCNGG 2 cut(s) 884, 1137
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 884
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 1 cut(s) 987
NaeI GCCGGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 1137
NcoI CCATGG 2 cut(s) 288, 520
NdeI CATATG 1 cut(s) 963
NdeII GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 9 cut(s) 272, 292, 367, 401, 453, 524, 719, 875, 1070
NlaIV GGNNCC 6 cut(s) 494, 551, 677, 847, 1102, 1126
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 3 cut(s) 532, 615, 784
PaeR7I CTCGAG 1 cut(s) 1089
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 661
PdiI GCCGGC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 5 cut(s) 40, 259, 386, 401, 1039
PflFI GACNNNGTC 1 cut(s) 590
PflMI CCANNNNNTGG 3 cut(s) 294, 1002, 1067
PkrI GCNGC 6 cut(s) 73, 76, 106, 696, 770, 980
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 882
PspGI CCWGG 1 cut(s) 882
PspN4I GGNNCC 6 cut(s) 494, 551, 677, 847, 1102, 1126
PspPI GGNCC 3 cut(s) 51, 285, 1070
PsuI RGATCY 4 cut(s) 58, 318, 845, 937
PsyI GACNNNGTC 1 cut(s) 590
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SacII CCGCGG 1 cut(s) 769
SaqAI TTAA 5 cut(s) 90, 471, 723, 756, 1156
SatI GCNGC 6 cut(s) 72, 75, 105, 695, 769, 979
Sau3AI GATC 9 cut(s) 58, 153, 271, 318, 643, 712, 845, 937, 985
Sau96I GGNCC 3 cut(s) 51, 285, 1070
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 884, 1137
SduI GDGCHC 3 cut(s) 120, 142, 1010
SfaNI GCATC 3 cut(s) 598, 811, 958
Sfr274I CTCGAG 1 cut(s) 1089
Sfr303I CCGCGG 1 cut(s) 769
SgrBI CCGCGG 1 cut(s) 769
SinI GGWCC 3 cut(s) 51, 285, 1070
SlaI CTCGAG 1 cut(s) 1089
SmlI CTYRAG 4 cut(s) 415, 736, 813, 1089
SmoI CTYRAG 4 cut(s) 415, 736, 813, 1089
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 8 cut(s) 130, 251, 433, 652, 891, 1028, 1048, 1146
SsiI CCGC 4 cut(s) 71, 766, 768, 1151
SspMI CTAG 3 cut(s) 465, 612, 794
StyD4I CCNGG 2 cut(s) 882, 1135
StyI CCWWGG 5 cut(s) 288, 520, 708, 1096, 1105
TaaI ACNGT 4 cut(s) 492, 590, 603, 914
TaqI TCGA 5 cut(s) 43, 86, 152, 160, 1090
TasI AATT 8 cut(s) 130, 251, 433, 652, 891, 1028, 1048, 1146
TatI WGTACW 1 cut(s) 125
TauI GCSGC 2 cut(s) 74, 771
TfiI GAWTC 5 cut(s) 40, 259, 386, 401, 1039
Tru1I TTAA 5 cut(s) 90, 471, 723, 756, 1156
Tru9I TTAA 5 cut(s) 90, 471, 723, 756, 1156
TscAI CASTG 3 cut(s) 595, 835, 950
TseFI GTSAC 3 cut(s) 532, 615, 784
TseI GCWGC 4 cut(s) 74, 104, 694, 978
Tsp45I GTSAC 3 cut(s) 532, 615, 784
TspDTI ATGAA 5 cut(s) 324, 414, 438, 761, 1055
TspGWI ACGGA 2 cut(s) 51, 634
TspRI CASTG 3 cut(s) 595, 835, 950
Tth111I GACNNNGTC 1 cut(s) 590
Van91I CCANNNNNTGG 3 cut(s) 294, 1002, 1067
VneI GTGCAC 2 cut(s) 116, 1006
VpaK11BI GGWCC 3 cut(s) 51, 285, 1070
XapI RAATTY 2 cut(s) 891, 1028
XcmI CCANNNNNNNNNTGG 2 cut(s) 863, 1103
XhoI CTCGAG 1 cut(s) 1089
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 3 cut(s) 465, 612, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.