Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026709.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

1336 .. 2232

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggcgtggagttttaatgatgaagattggatctctggtgatgatggaggcacaatcaggtattggaagagtaacatgagtaatgtgctagtcaatgaatccgctcaccatgaatcggttcgggacttgagcttctgtcggagtaatttgaagttttgttcatgttccgatgataccactgttaaaatctgggattttgaacggtgccaacaagagcagacattgactggccatggttggaatgtcaagagtgttgactggcaccccacaaactctctgatagcttcgggcgggaaagacagtgtcgtcaaactgtgggatgctaggtcacgcagagagctttgttcgttttatgatcacaaaaattgggtgcattctgtcaagtggaaccgaaatggtaactggctgctaactgcttccaaggatcatgtcattaagctttacgacttgagggctatgaaggagcttaaatctttccgcggccatcagaaccaagtgactgctctagcttggcatcctcttactgaagactattttgtcagtgggagtagtgatggatccattttccattggcttgttgggcatgtaactccccaggttgcaattcctaatgcacacagtaacagttacaataatagtgtgtgggatctccagtggcatcctattggtcatatgatttgtagtggtagcaatgatcgcaccaccaagttttggtgcaggacaggagataaatctaaaatcagtcagaatcaaagtaattctgattttgcttgtcacatgaacagtaattctccttttccatatcatggaccaccaactattgctactcgagaccagggaaccattggttcaggaggtgttggaaccattataccaggtgttggaattgcggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

298

Amino Acids

33.63

Weight (kDa)

6.96

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	305, 536
AccB1I	GGYRCC	2 cut(s)	204, 261
AccB7I	CCANNNNNTGG	3 cut(s)	711, 806, 881
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	480
AciI	CCGC	5 cut(s)	102, 291, 478, 480, 890
AclWI	GGATC	5 cut(s)	38, 432, 552, 565, 654
AcoI	YGGCCR	2 cut(s)	229, 481
AcuI	CTGAAG	1 cut(s)	546
AfiI	CCNNNNNNNGG	4 cut(s)	115, 711, 806, 881
AgsI	TTSAA	2 cut(s)	151, 200
AjnI	CCWGG	3 cut(s)	594, 834, 874
AluBI	AGCT	6 cut(s)	132, 284, 340, 439, 466, 509
AluI	AGCT	6 cut(s)	132, 284, 340, 439, 466, 509
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	5 cut(s)	38, 432, 552, 565, 654
Ama87I	CYCGRG	1 cut(s)	828
AoxI	GGCC	2 cut(s)	229, 481
ApeKI	GCWGC	1 cut(s)	406
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	50, 98
AvaI	CYCGRG	1 cut(s)	828
AvaII	GGWCC	1 cut(s)	809
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BalI	TGGCCA	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	204, 261
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	3 cut(s)	38, 492, 548
BciT130I	CCWGG	3 cut(s)	596, 836, 876
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	825
BfaI	CTAG	3 cut(s)	89, 324, 506
BisI	GCNGC	2 cut(s)	407, 481
BlsI	GCNGC	2 cut(s)	408, 482
Bme1390I	CCNGG	3 cut(s)	596, 836, 876
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	828
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	6 cut(s)	206, 263, 389, 559, 841, 865
BmrFI	CCNGG	3 cut(s)	596, 836, 876
BmsI	GCATC	3 cut(s)	310, 523, 667
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	148, 469
BsaI	GGTCTC	1 cut(s)	825
BsaJI	CCNNGG	5 cut(s)	232, 420, 478, 594, 835
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 711, 806, 881
Bse1I	ACTGG	4 cut(s)	232, 263, 407, 652
Bse3DI	GCAATG	1 cut(s)	697
BseBI	CCWGG	3 cut(s)	596, 836, 876
BseDI	CCNNGG	5 cut(s)	232, 420, 478, 594, 835
BseGI	GGATG	3 cut(s)	325, 514, 658
BseLI	CCNNNNNNNGG	4 cut(s)	115, 711, 806, 881
BseMI	GCAATG	1 cut(s)	697
BseNI	ACTGG	4 cut(s)	232, 263, 407, 652
BseXI	GCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	736
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	231, 483
BshNI	GGYRCC	2 cut(s)	204, 261
BsiHKCI	CYCGRG	1 cut(s)	828
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	115, 711, 806, 881
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	231, 483
Bso31I	GGTCTC	1 cut(s)	825
BsoBI	CYCGRG	1 cut(s)	828
Bsp143I	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	5 cut(s)	102, 291, 478, 480, 890
BspANI	GGCC	2 cut(s)	231, 483
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	6 cut(s)	206, 263, 389, 559, 841, 865
BspPI	GGATC	5 cut(s)	38, 432, 552, 565, 654
BspT107I	GGYRCC	2 cut(s)	204, 261
BspTNI	GGTCTC	1 cut(s)	825
BsrBI	CCGCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	4 cut(s)	232, 263, 407, 652
BssECI	CCNNGG	5 cut(s)	232, 420, 478, 594, 835
BssMI	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
BssT1I	CCWWGG	2 cut(s)	232, 420
Bst2UI	CCWGG	3 cut(s)	596, 836, 876
Bst4CI	ACNGT	7 cut(s)	181, 204, 302, 315, 620, 626, 785
Bst6I	CTCTTC	1 cut(s)	62
BstDSI	CCRYGG	2 cut(s)	232, 478
BstF5I	GGATG	3 cut(s)	325, 514, 658
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	6 cut(s)	33, 358, 427, 560, 649, 697
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	580, 696
BstNI	CCWGG	3 cut(s)	596, 836, 876
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	594, 834, 874
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	3 cut(s)	30, 557, 646
BstYI	RGATCY	3 cut(s)	30, 557, 646
BsuRI	GGCC	2 cut(s)	231, 483
BtgI	CCRYGG	2 cut(s)	232, 478
BtsCI	GGATG	3 cut(s)	325, 514, 658
BtsIMutI	CAGTG	4 cut(s)	177, 307, 547, 659
Cfr13I	GGNCC	1 cut(s)	809
Cfr42I	CCGCGG	1 cut(s)	481
CsiI	ACCWGGT	1 cut(s)	874
CviAII	CATG	8 cut(s)	76, 110, 162, 233, 428, 584, 778, 806
DpnI	GATC	6 cut(s)	32, 357, 426, 559, 648, 696
DpnII	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
DrdI	GACNNNNNNGTC	2 cut(s)	305, 536
DseDI	GACNNNNNNGTC	2 cut(s)	305, 536
EaeI	YGGCCR	2 cut(s)	229, 481
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	232, 420
Eco31I	GGTCTC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	828
EcoRII	CCWGG	3 cut(s)	594, 834, 874
EcoT14I	CCWWGG	2 cut(s)	232, 420
ErhI	CCWWGG	2 cut(s)	232, 420
FaeI	CATG	8 cut(s)	79, 113, 165, 236, 431, 587, 781, 809
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	8 cut(s)	75, 109, 161, 232, 427, 583, 777, 805
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	1 cut(s)	672
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	407, 481
FokI	GGATG	3 cut(s)	332, 501, 645
Fsp4HI	GCNGC	2 cut(s)	407, 481
FspBI	CTAG	3 cut(s)	89, 324, 506
GluI	GCNGC	2 cut(s)	407, 481
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	231, 483
Hin1II	CATG	8 cut(s)	79, 113, 165, 236, 431, 587, 781, 809
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	98, 113, 748
HphI	GGTGA	2 cut(s)	50, 98
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	6 cut(s)	141, 169, 279, 489, 747, 763
Hpy188III	TCNNGA	4 cut(s)	122, 247, 830, 852
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	7 cut(s)	181, 204, 302, 315, 620, 626, 785
HpyCH4V	TGCA	4 cut(s)	373, 602, 614, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	580, 696
Hsp92II	CATG	8 cut(s)	79, 113, 165, 236, 431, 587, 781, 809
Ksp22I	TGATCA	1 cut(s)	355
KspI	CCGCGG	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	3 cut(s)	310, 523, 667
MabI	ACCWGGT	1 cut(s)	874
MaeI	CTAG	3 cut(s)	89, 324, 506
MaeIII	GTNAC	8 cut(s)	71, 327, 398, 496, 586, 620, 626, 773
MalI	GATC	6 cut(s)	32, 357, 426, 559, 648, 696
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
MboII	GAAGA	3 cut(s)	35, 79, 539
MflI	RGATCY	3 cut(s)	30, 557, 646
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	6 cut(s)	145, 364, 603, 757, 787, 885
MluNI	TGGCCA	1 cut(s)	231
MmeI	TCCRAC	4 cut(s)	119, 218, 841, 862
MnlI	CCTC	4 cut(s)	41, 444, 528, 848
Mox20I	TGGCCA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	5 cut(s)	15, 183, 435, 468, 895
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	480
MspR9I	CCNGG	3 cut(s)	596, 836, 876
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	3 cut(s)	596, 836, 876
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	580, 696
NcoI	CCATGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
NlaIII	CATG	8 cut(s)	79, 113, 165, 236, 431, 587, 781, 809
NlaIV	GGNNCC	6 cut(s)	206, 263, 389, 559, 841, 865
NmuCI	GTSAC	3 cut(s)	327, 496, 773
NspI	RCATGY	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	828
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	98, 113, 748
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	3 cut(s)	711, 806, 881
PkrI	GCNGC	2 cut(s)	408, 482
Psp6I	CCWGG	3 cut(s)	594, 834, 874
PspGI	CCWGG	3 cut(s)	594, 834, 874
PspN4I	GGNNCC	6 cut(s)	206, 263, 389, 559, 841, 865
PspPI	GGNCC	1 cut(s)	809
PsuI	RGATCY	3 cut(s)	30, 557, 646
PsyI	GACNNNGTC	1 cut(s)	302
SacII	CCGCGG	1 cut(s)	481
SaqAI	TTAA	5 cut(s)	15, 183, 435, 468, 895
SatI	GCNGC	2 cut(s)	407, 481
Sau3AI	GATC	6 cut(s)	30, 355, 424, 557, 646, 694
Sau96I	GGNCC	1 cut(s)	809
ScrFI	CCNGG	3 cut(s)	596, 836, 876
SexAI	ACCWGGT	1 cut(s)	874
SfaNI	GCATC	3 cut(s)	310, 523, 667
Sfr274I	CTCGAG	1 cut(s)	828
Sfr303I	CCGCGG	1 cut(s)	481
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	828
SmlI	CTYRAG	3 cut(s)	127, 448, 828
SmoI	CTYRAG	3 cut(s)	127, 448, 828
Sse9I	AATT	6 cut(s)	145, 364, 603, 757, 787, 885
SsiI	CCGC	5 cut(s)	102, 291, 478, 480, 890
SspMI	CTAG	3 cut(s)	89, 324, 506
StyD4I	CCNGG	3 cut(s)	594, 834, 874
StyI	CCWWGG	2 cut(s)	232, 420
TaaI	ACNGT	7 cut(s)	181, 204, 302, 315, 620, 626, 785
TaqI	TCGA	1 cut(s)	829
TasI	AATT	6 cut(s)	145, 364, 603, 757, 787, 885
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	3 cut(s)	98, 113, 748
Tru1I	TTAA	5 cut(s)	15, 183, 435, 468, 895
Tru9I	TTAA	5 cut(s)	15, 183, 435, 468, 895
TscAI	CASTG	4 cut(s)	184, 307, 547, 659
TseFI	GTSAC	3 cut(s)	327, 496, 773
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	3 cut(s)	327, 496, 773
TspDTI	ATGAA	6 cut(s)	36, 111, 126, 150, 473, 794
TspRI	CASTG	4 cut(s)	184, 307, 547, 659
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	3 cut(s)	711, 806, 881
VpaK11BI	GGWCC	1 cut(s)	809
XceI	RCATGY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	2 cut(s)	575, 842
XhoI	CTCGAG	1 cut(s)	828
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	3 cut(s)	89, 324, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.