Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006601.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

41415 .. 42256

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006601.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggcccatcaccaccacccctacgcctgttcttcgattaacaacaacccatttgctgcccagtttgtgcgctcttgcacaaattacagagcccgtgcttcttcgatcaatcgagttttatggacaccttctgggaggcgtcttatcacaggctctcaaaacggggagttcactctctggaatggtgagtcattcaaacatgaattgaggattcagggtcatgatcacgcaatcaggtccatggcgtggagttttgatgatcaagattggatctctggtgatgatgggggcacaatcaggtattggaagagtaacatgattaatgtgctagtcaatgaatctgctcaccatgaatcggttcgggacctgagcttctgtcggactaatttgaagttttgttcatgttccgatgatactacggttaaaatctgggattttgaacggtgccaacaggagaagacattgaccggccatggttggaatgtgacgagtgttgactggcaccccacaaactctctgatagcttcgggtgggtgggacagtgttgtcaaactgtgggatgctaggtcagggagagaactctgttctttttatgatcacaaaaattgggtgcattctgtcaagtggaaccgaaatggtaactggctgctgactgcttccaaggatcaagtcattaagctttacgacttgagggctatgaaggaacttagatctttccgcggccatcagaacaaagtgactgctctagcttggcatcctcttaccgaagattattttgtcagtgggagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

263

Amino Acids

30.39

Weight (kDa)

8.46

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccB1I	GGYRCC	2 cut(s)	444, 501
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	720
AciI	CCGC	2 cut(s)	718, 720
AclWI	GGATC	2 cut(s)	278, 672
AcoI	YGGCCR	2 cut(s)	469, 721
AcyI	GRCGYC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	246, 355
AgsI	TTSAA	3 cut(s)	196, 391, 440
AluBI	AGCT	4 cut(s)	372, 524, 679, 749
AluI	AGCT	4 cut(s)	372, 524, 679, 749
AlwI	GGATC	2 cut(s)	278, 672
AoxI	GGCC	3 cut(s)	3, 469, 721
ApeKI	GCWGC	2 cut(s)	56, 646
AseI	ATTAAT	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	3 cut(s)	4, 237, 364
AsuHPI	GGTGA	3 cut(s)	197, 290, 338
AvaII	GGWCC	2 cut(s)	237, 364
BaeGI	GKGCMC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	2 cut(s)	444, 501
BanII	GRGCYC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	43, 633
BccI	CCATC	3 cut(s)	15, 278, 732
BclI	TGATCA	3 cut(s)	223, 259, 595
BfaI	CTAG	3 cut(s)	329, 564, 746
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	3 cut(s)	57, 647, 721
BlsI	GCNGC	3 cut(s)	58, 648, 722
Bme18I	GGWCC	2 cut(s)	237, 364
BmgT120I	GGNCC	3 cut(s)	4, 237, 364
BmiI	GGNNCC	4 cut(s)	365, 446, 503, 629
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	550, 763
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	4 cut(s)	240, 472, 660, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 355
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	3 cut(s)	61, 503, 647
BseDI	CCNNGG	4 cut(s)	240, 472, 660, 718
BseGI	GGATG	2 cut(s)	565, 754
BseLI	CCNNNNNNNGG	2 cut(s)	246, 355
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	3 cut(s)	61, 503, 647
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	43, 633
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	3 cut(s)	5, 471, 723
BshNI	GGYRCC	2 cut(s)	444, 501
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	377, 551
BslI	CCNNNNNNNGG	2 cut(s)	246, 355
BsmFI	GGGAC	2 cut(s)	377, 551
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	5, 471, 723
Bsp1286I	GDGCHC	2 cut(s)	94, 293
Bsp143I	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
Bsp19I	CCATGG	2 cut(s)	240, 472
BspACI	CCGC	2 cut(s)	718, 720
BspANI	GGCC	3 cut(s)	5, 471, 723
BspCNI	CTCAG	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	365, 446, 503, 629
BspPI	GGATC	2 cut(s)	278, 672
BspT107I	GGYRCC	2 cut(s)	444, 501
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	61, 503, 647
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	4 cut(s)	240, 472, 660, 718
BssMI	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	3 cut(s)	240, 472, 660
Bst4CI	ACNGT	4 cut(s)	421, 444, 542, 555
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	368, 707
BstDSI	CCRYGG	3 cut(s)	240, 472, 718
BstF5I	GGATG	2 cut(s)	565, 754
BstFNI	CGCG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	7 cut(s)	108, 226, 262, 273, 598, 667, 713
BstMBI	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	43, 633
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	270, 710
BstYI	RGATCY	2 cut(s)	270, 710
BsuRI	GGCC	3 cut(s)	5, 471, 723
BtgI	CCRYGG	3 cut(s)	240, 472, 718
BtsCI	GGATG	2 cut(s)	565, 754
BtsIMutI	CAGTG	2 cut(s)	547, 787
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	4, 237, 364
Cfr42I	CCGCGG	1 cut(s)	721
CseI	GACGC	1 cut(s)	128
CviAII	CATG	7 cut(s)	200, 221, 241, 316, 350, 402, 473
DdeI	CTNAG	2 cut(s)	368, 707
DpnI	GATC	7 cut(s)	107, 225, 261, 272, 597, 666, 712
DpnII	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	2 cut(s)	469, 721
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	3 cut(s)	240, 472, 660
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	237, 364
EcoO109I	RGGNCCY	1 cut(s)	364
EcoT14I	CCWWGG	3 cut(s)	240, 472, 660
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	3 cut(s)	240, 472, 660
FaeI	CATG	7 cut(s)	203, 224, 244, 319, 353, 405, 476
FaqI	GGGAC	2 cut(s)	377, 551
FatI	CATG	7 cut(s)	199, 220, 240, 315, 349, 401, 472
FbaI	TGATCA	3 cut(s)	223, 259, 595
Fnu4HI	GCNGC	3 cut(s)	57, 647, 721
FokI	GGATG	2 cut(s)	572, 741
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	57, 647, 721
FspBI	CTAG	3 cut(s)	329, 564, 746
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	57, 647, 721
HaeIII	GGCC	3 cut(s)	5, 471, 723
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	7 cut(s)	203, 224, 244, 319, 353, 405, 476
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	4 cut(s)	188, 211, 338, 353
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	197, 290, 338
Hpy166II	GTNNAC	2 cut(s)	171, 496
Hpy188I	TCNGA	4 cut(s)	381, 409, 519, 729
Hpy188III	TCNNGA	4 cut(s)	178, 221, 263, 362
Hpy8I	GTNNAC	2 cut(s)	171, 496
HpyAV	CCTTC	2 cut(s)	138, 694
HpyCH4III	ACNGT	4 cut(s)	421, 444, 542, 555
HpyCH4V	TGCA	2 cut(s)	78, 613
HpyF3I	CTNAG	2 cut(s)	368, 707
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	7 cut(s)	203, 224, 244, 319, 353, 405, 476
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	223, 259, 595
KspI	CCGCGG	1 cut(s)	721
Kzo9I	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
Lsp1109I	GCAGC	2 cut(s)	43, 633
LweI	GCATC	2 cut(s)	550, 763
MaeI	CTAG	3 cut(s)	329, 564, 746
MaeIII	GTNAC	4 cut(s)	311, 484, 638, 736
MalI	GATC	7 cut(s)	107, 225, 261, 272, 597, 666, 712
MboI	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
MboII	GAAGA	5 cut(s)	24, 93, 319, 469, 779
MflI	RGATCY	2 cut(s)	270, 710
MhlI	GDGCHC	2 cut(s)	94, 293
MluCI	AATT	4 cut(s)	82, 203, 385, 604
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	359, 458
MnlI	CCTC	4 cut(s)	129, 201, 684, 768
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	4 cut(s)	39, 321, 423, 675
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	613
MvnI	CGCG	1 cut(s)	720
NcoI	CCATGG	2 cut(s)	240, 472
NdeII	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
NlaIII	CATG	7 cut(s)	203, 224, 244, 319, 353, 405, 476
NlaIV	GGNNCC	4 cut(s)	365, 446, 503, 629
NmuCI	GTSAC	2 cut(s)	484, 736
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	211, 338, 353
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	58, 648, 722
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	365, 446, 503, 629
PspPI	GGNCC	3 cut(s)	4, 237, 364
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	270, 710
SacII	CCGCGG	1 cut(s)	721
SaqAI	TTAA	4 cut(s)	39, 321, 423, 675
SatI	GCNGC	3 cut(s)	57, 647, 721
Sau3AI	GATC	7 cut(s)	105, 223, 259, 270, 595, 664, 710
Sau96I	GGNCC	3 cut(s)	4, 237, 364
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	94, 293
SetI	ASST	9 cut(s)	130, 239, 302, 369, 374, 526, 569, 681, 751
SfaNI	GCATC	2 cut(s)	550, 763
Sfr303I	CCGCGG	1 cut(s)	721
SgrBI	CCGCGG	1 cut(s)	721
SinI	GGWCC	2 cut(s)	237, 364
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	4 cut(s)	82, 203, 385, 604
SsiI	CCGC	2 cut(s)	718, 720
SspMI	CTAG	3 cut(s)	329, 564, 746
StyI	CCWWGG	3 cut(s)	240, 472, 660
TaaI	ACNGT	4 cut(s)	421, 444, 542, 555
TaqI	TCGA	3 cut(s)	35, 104, 112
TasI	AATT	4 cut(s)	82, 203, 385, 604
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	211, 338, 353
Tru1I	TTAA	4 cut(s)	39, 321, 423, 675
Tru9I	TTAA	4 cut(s)	39, 321, 423, 675
TscAI	CASTG	2 cut(s)	547, 787
TseFI	GTSAC	2 cut(s)	484, 736
TseI	GCWGC	2 cut(s)	56, 646
Tsp45I	GTSAC	2 cut(s)	484, 736
TspDTI	ATGAA	5 cut(s)	216, 351, 366, 390, 713
TspRI	CASTG	2 cut(s)	547, 787
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	237, 364
VspI	ATTAAT	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	3 cut(s)	329, 564, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.