Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01032

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

162359 .. 164820

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGTTCCGGAGTATCATCCCCACCCCTACGCCCCTGCTGGTCCTCATGCTCCTCCTCATGTCGAAGGCTTTGGTGCAATAAGAAACAGAAAGCAGACCCAGGGAAGGACAGTTGATTACACTACCTCTGTCGTGCAATACACACAGACTCGAAAGCGGCAGCGTGATGCAAGAGATACAACAGTGTTGCAACCTACACCAGCAGCATCAATCAATTCGTTGCCGCCGGTTGCGTATTCGGATAACCCATCTAGGAGCTTTGCTGCAAAGTTTGTGCATGCTTGTACAAATTACAGAGCCCGTACTTGTCCGATTAATCGGGTTTTGTGGACACCTTCCGGGAGGCGTCTCATTACAGGGTCCCAAAATGGGGAGTTCACTCTTTGGGATGGTCAGTCATTTAACTATGAATTGAGTTTTCTGGCTCATGATCAAGCAGTCAGGTCTATGGCGTGGAGTTATGATGGTGAGAATTGGATTTCTGGTGATGATGGGGGATCAATAAAGTATTGGACGAGTAACATGAACAATGTGCTAGTCAATGAATCTGCTCACCGAGAATCGGTTCGGGACTTGAGCTTTTGTAGGACTAATTTGAAGTTCTGTTCATGTTCGGATGATACTTATGTGAAAATCTGGGATTATGAAAGGTGCCAAGAAGAGTTCAGATTGACTGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCCTTACTAGCTTCAGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGACAGGGAGAGAGCTTTGTTCATTTCATGATCACAAAAATTGGGTGCAATCTGTTAAGTGGAGCCGAAATGGTAACTGGCTGCTAACTGCTTCCAAGGATCAAGTCATTAAGCTTTACGACATGAGGGCTATGAAGGAACTTGAATCATTCCACGGGCATCGGAATGAAGTGACTGCTATAGCTTGGCATCCTTTTCACGAAGAATATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAGTTCCTAATGCACACAGTAACAATCACAATAACAGTGTGTGGGATCTCCAATGGCATCCTATTGGTCATATGCTTTGCAGTGGTAGCAATGATCGCACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGATAAATGTAACATCAGTCAGAATCAAAGACAACCAAAAATTGCTACTCGAAACCAAGGAACCATTATTCCAGGTGCCAGTAATCTCAAATATCCCCAGACAAAGCCTGAACAACTAGTAATGCAGTACAATTCCAGTTTGCACCAACATTTTTCATTAGATAACATTGATCTTCCTCTTCCACACCCAAATTTGAATTTATTAATTTTTTTTGTAATCTTTTTGTTTCCTCCTCATCGTAATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

475

Amino Acids

54.47

Weight (kDa)

8.7

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	89 - 216	5.2e-07	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	96 - 322	6.6e-41	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	96 - 219	3.4e-16	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	97 - 263	9.2e-24	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	99 - 308	1.9e-19	G protein beta WD-40 repeat protein
Beta-prop_IFT140_1st	PF23383	100 - 189	2.5e-08	IFT140 first beta-propeller
Beta-prop_WDR3_1st	PF25173	102 - 216	2.4e-17	WDR3 first beta-propeller domain
Beta-prop_EIPR1	PF23609	106 - 255	1.7e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	107 - 264	9.4e-16	WDHD1 first WD40 domain
WD40_Prp19	PF24814	114 - 307	4e-31	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	133 - 256	1.1e-13	WDR3 second beta-propeller domain
EIF3I	PF24805	140 - 218	3.9e-07	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	142 - 250	4.7e-06	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	175 - 341	2.4e-17	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	180 - 340	1.9e-17	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	183 - 283	9.8e-21	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	197 - 340	8.9e-22	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	201 - 289	3.8e-08	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	203 - 298	4.8e-06	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	212 - 340	9.5e-28	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	221 - 319	6.7e-13	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	222 - 343	6.4e-13	WDR3 second beta-propeller domain
WD40	PF00400	222 - 256	1.4e-08	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	224 - 305	2.9e-11	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	225 - 386	5.4e-14	EIF3I
Beta-prop_EML	PF23409	225 - 330	4.1e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_IFT140_1st	PF23383	227 - 296	9.6e-07	IFT140 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	231 - 387	1.8e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	234 - 406	7.6e-08	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	247 - 388	4.3e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	251 - 391	6.5e-23	CDC20/Fizzy WD40 domain
Beta-prop_EIPR1	PF23609	258 - 387	1.8e-07	EIPR1 beta-propeller
WD40	PF00400	261 - 298	5.5e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	268 - 389	2.4e-19	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	269 - 388	1.8e-21	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	273 - 403	4.2e-13	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	285 - 380	8e-07	WDR90/POC16, second beta-propeller
WD40	PF00400	303 - 340	7.5e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	304 - 387	9.3e-10	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
AccB1I	GGYRCC	3 cut(s)	651, 708, 1253
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	2 cut(s)	157, 224
AclWI	GGATC	5 cut(s)	505, 879, 999, 1012, 1101
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	1369, 1375
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	3 cut(s)	286, 304, 1307
AfiI	CCNNNNNNNGG	4 cut(s)	105, 369, 370, 562
AgsI	TTSAA	4 cut(s)	598, 917, 1049, 1375
AhlI	ACTAGT	1 cut(s)	1294
AjnI	CCWGG	4 cut(s)	99, 1041, 1174, 1249
AloI	GAACNNNNNNTCC	2 cut(s)	1231, 1263
AluBI	AGCT	6 cut(s)	258, 579, 731, 787, 886, 956
AluI	AGCT	6 cut(s)	258, 579, 731, 787, 886, 956
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	5 cut(s)	505, 879, 999, 1012, 1101
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	2 cut(s)	676, 1172
ApeKI	GCWGC	4 cut(s)	160, 203, 263, 853
ApoI	RAATTY	2 cut(s)	1369, 1375
AseI	ATTAAT	2 cut(s)	315, 1382
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	41, 360
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	479, 497, 545
AvaII	GGWCC	2 cut(s)	41, 360
BaeI	ACNNNNGTAYC	4 cut(s)	168, 201, 612, 645
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	1004
BanI	GGYRCC	3 cut(s)	651, 708, 1253
BanII	GRGCYC	1 cut(s)	301
BbvI	GCAGC	4 cut(s)	172, 215, 250, 840
BccI	CCATC	5 cut(s)	256, 383, 458, 485, 995
BciT130I	CCWGG	4 cut(s)	101, 1043, 1176, 1251
BclI	TGATCA	2 cut(s)	430, 802
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	353
BcuI	ACTAGT	1 cut(s)	1294
BfaI	CTAG	5 cut(s)	252, 536, 728, 771, 1295
BfmI	CTRYAG	1 cut(s)	951
BisI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
BlsI	GCNGC	6 cut(s)	159, 162, 205, 225, 265, 855
Bme1390I	CCNGG	5 cut(s)	101, 340, 1043, 1176, 1251
Bme18I	GGWCC	2 cut(s)	41, 360
BmgT120I	GGNCC	2 cut(s)	41, 360
BmiI	GGNNCC	9 cut(s)	6, 361, 362, 653, 710, 836, 1006, 1240, 1255
BmrFI	CCNGG	5 cut(s)	101, 340, 1043, 1176, 1251
BmsI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
BpuEI	CTTGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	7 cut(s)	99, 100, 679, 867, 925, 1041, 1234
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 369, 370, 562
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	5 cut(s)	679, 710, 854, 1257, 1314
Bse3DI	GCAATG	1 cut(s)	1144
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	4 cut(s)	101, 1043, 1176, 1251
BseDI	CCNNGG	7 cut(s)	99, 100, 679, 867, 925, 1041, 1234
BseGI	GGATG	6 cut(s)	16, 394, 622, 772, 961, 1105
BseLI	CCNNNNNNNGG	4 cut(s)	105, 369, 370, 562
BseMI	GCAATG	1 cut(s)	1144
BseNI	ACTGG	5 cut(s)	679, 710, 854, 1257, 1314
BseRI	GAGGAG	3 cut(s)	42, 45, 1401
BseXI	GCAGC	4 cut(s)	172, 215, 250, 840
BsgI	GTGCAG	1 cut(s)	1183
BshFI	GGCC	2 cut(s)	678, 1174
BshNI	GGYRCC	3 cut(s)	651, 708, 1253
BsiSI	CCGG	3 cut(s)	8, 227, 339
BslFI	GGGAC	2 cut(s)	346, 584
BslI	CCNNNNNNNGG	4 cut(s)	105, 369, 370, 562
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	346, 584
BsnI	GGCC	2 cut(s)	678, 1174
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	2 cut(s)	157, 224
BspANI	GGCC	2 cut(s)	678, 1174
BspEI	TCCGGA	1 cut(s)	7
BspHI	TCATGA	2 cut(s)	427, 799
BspLI	GGNNCC	9 cut(s)	6, 361, 362, 653, 710, 836, 1006, 1240, 1255
BspPI	GGATC	5 cut(s)	505, 879, 999, 1012, 1101
BspT107I	GGYRCC	3 cut(s)	651, 708, 1253
BsrDI	GCAATG	1 cut(s)	1144
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	5 cut(s)	679, 710, 854, 1257, 1314
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	7 cut(s)	99, 100, 679, 867, 925, 1041, 1234
BssMI	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	3 cut(s)	679, 867, 1234
Bst2UI	CCWGG	4 cut(s)	101, 1043, 1176, 1251
Bst4CI	ACNGT	6 cut(s)	112, 184, 749, 762, 1067, 1085
Bst6I	CTCTTC	3 cut(s)	654, 689, 1362
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	279
BstDSI	CCRYGG	2 cut(s)	679, 925
BstF5I	GGATG	6 cut(s)	16, 394, 622, 772, 961, 1105
BstKTI	GATC	8 cut(s)	433, 500, 805, 874, 1007, 1096, 1144, 1351
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
BstMWI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
BstNI	CCWGG	4 cut(s)	101, 1043, 1176, 1251
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	5 cut(s)	99, 338, 1041, 1174, 1249
BstSFI	CTRYAG	1 cut(s)	951
BstV1I	GCAGC	4 cut(s)	172, 215, 250, 840
BstX2I	RGATCY	2 cut(s)	1004, 1093
BstYI	RGATCY	2 cut(s)	1004, 1093
BsuRI	GGCC	2 cut(s)	678, 1174
BtgI	CCRYGG	2 cut(s)	679, 925
BtsCI	GGATG	6 cut(s)	16, 394, 622, 772, 961, 1105
BtsI	GCAGTG	1 cut(s)	1135
BtsIMutI	CAGTG	5 cut(s)	189, 754, 994, 1090, 1135
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	2 cut(s)	427, 799
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	41, 360
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	285, 303, 1306
CviQI	GTAC	3 cut(s)	285, 303, 1306
DpnI	GATC	8 cut(s)	432, 499, 804, 873, 1006, 1095, 1143, 1350
DpnII	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	3 cut(s)	654, 689, 1362
EarI	CTCTTC	3 cut(s)	654, 689, 1362
Eco130I	CCWWGG	3 cut(s)	679, 867, 1234
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	41, 360
Eco57I	CTGAAG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	4 cut(s)	99, 1041, 1174, 1249
EcoT14I	CCWWGG	3 cut(s)	679, 867, 1234
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	3 cut(s)	679, 867, 1234
Esp3I	CGTCTC	1 cut(s)	353
FaqI	GGGAC	2 cut(s)	346, 584
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	2 cut(s)	430, 802
Fnu4HI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
FokI	GGATG	6 cut(s)	3, 401, 629, 779, 948, 1092
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
FspBI	CTAG	5 cut(s)	252, 536, 728, 771, 1295
GluI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
HaeIII	GGCC	2 cut(s)	678, 1174
HapII	CCGG	3 cut(s)	8, 227, 339
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	5 cut(s)	148, 545, 560, 917, 1201
HpaII	CCGG	3 cut(s)	8, 227, 339
HphI	GGTGA	3 cut(s)	479, 497, 545
Hpy166II	GTNNAC	3 cut(s)	330, 378, 703
Hpy188I	TCNGA	6 cut(s)	241, 312, 616, 668, 936, 1200
Hpy188III	TCNNGA	6 cut(s)	8, 428, 569, 800, 971, 1425
Hpy8I	GTNNAC	3 cut(s)	330, 378, 703
HpyAV	CCTTC	4 cut(s)	59, 99, 345, 901
HpyCH4III	ACNGT	6 cut(s)	112, 184, 749, 762, 1067, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
Hsp92I	GRCGYC	1 cut(s)	346
KflI	GGGWCCC	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	430, 802
Kzo9I	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
LmnI	GCTCC	3 cut(s)	55, 255, 834
Lsp1109I	GCAGC	4 cut(s)	172, 215, 250, 840
LweI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
MaeI	CTAG	5 cut(s)	252, 536, 728, 771, 1295
MaeIII	GTNAC	5 cut(s)	518, 845, 943, 1067, 1187
MalI	GATC	8 cut(s)	432, 499, 804, 873, 1006, 1095, 1143, 1350
MboI	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
MboII	GAAGA	5 cut(s)	671, 706, 986, 1343, 1349
MflI	RGATCY	2 cut(s)	1004, 1093
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	678
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	9 cut(s)	54, 63, 66, 136, 336, 891, 1365, 1419, 1422
Mox20I	TGGCCA	1 cut(s)	678
MroI	TCCGGA	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	5 cut(s)	315, 402, 828, 882, 1382
MslI	CAYNNNNRTG	1 cut(s)	936
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	3 cut(s)	8, 227, 339
MspR9I	CCNGG	5 cut(s)	101, 340, 1043, 1176, 1251
MvaI	CCWGG	4 cut(s)	101, 1043, 1176, 1251
MwoI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	679
NdeI	CATATG	1 cut(s)	1119
NdeII	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
NlaIV	GGNNCC	9 cut(s)	6, 361, 362, 653, 710, 836, 1006, 1240, 1255
NmuCI	GTSAC	1 cut(s)	943
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	2 cut(s)	427, 799
PasI	CCCWGGG	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	545, 560, 917, 1201
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	6 cut(s)	159, 162, 205, 225, 265, 855
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	360
PshBI	ATTAAT	2 cut(s)	315, 1382
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	4 cut(s)	99, 1041, 1174, 1249
PspGI	CCWGG	4 cut(s)	99, 1041, 1174, 1249
PspN4I	GGNNCC	9 cut(s)	6, 361, 362, 653, 710, 836, 1006, 1240, 1255
PspPI	GGNCC	2 cut(s)	41, 360
PspPPI	RGGWCCY	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	1004, 1093
RsaI	GTAC	3 cut(s)	286, 304, 1307
RsaNI	GTAC	3 cut(s)	285, 303, 1306
RseI	CAYNNNNRTG	1 cut(s)	936
SaqAI	TTAA	5 cut(s)	315, 402, 828, 882, 1382
SatI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
Sau3AI	GATC	8 cut(s)	430, 497, 802, 871, 1004, 1093, 1141, 1348
Sau96I	GGNCC	2 cut(s)	41, 360
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	5 cut(s)	101, 340, 1043, 1176, 1251
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
SfcI	CTRYAG	1 cut(s)	951
SinI	GGWCC	2 cut(s)	41, 360
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
SpeI	ACTAGT	1 cut(s)	1294
SphI	GCATGC	1 cut(s)	281
SsiI	CCGC	2 cut(s)	157, 224
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	5 cut(s)	252, 536, 728, 771, 1295
StyD4I	CCNGG	5 cut(s)	99, 338, 1041, 1174, 1249
StyI	CCWWGG	3 cut(s)	679, 867, 1234
TaaI	ACNGT	6 cut(s)	112, 184, 749, 762, 1067, 1085
TaqI	TCGA	3 cut(s)	63, 151, 1228
TatI	WGTACW	2 cut(s)	284, 1305
TauI	GCSGC	2 cut(s)	160, 226
TfiI	GAWTC	4 cut(s)	545, 560, 917, 1201
Tru1I	TTAA	5 cut(s)	315, 402, 828, 882, 1382
Tru9I	TTAA	5 cut(s)	315, 402, 828, 882, 1382
TscAI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
TseFI	GTSAC	1 cut(s)	943
TseI	GCWGC	4 cut(s)	160, 203, 263, 853
Tsp45I	GTSAC	1 cut(s)	943
TspRI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
VpaK11BI	GGWCC	2 cut(s)	41, 360
VspI	ATTAAT	2 cut(s)	315, 1382
XapI	RAATTY	2 cut(s)	1369, 1375
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	5 cut(s)	252, 536, 728, 771, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.