Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

28531559 .. 28532701

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG281000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCCCATCACCACCGCCCCTACGCCTGTTCTTCGATTAACAACAACCCATTTGCTGCCCAGTTTGTGCGCTCTTGCACAAATTACAGAGCCCGTGCTTCTTCGATCAATCGAGTTTTATGGACGCCTTCTGGGAGGCGTCTTATTACAGGCTCTCAAAACGGGGAGTTCACTCTCTGGAATGGTGAGTCATTCAAATATGAATTGAGGATTCAGGCTCATGATCACGCAATCAGGTCCATGGCGTGGAGTTTTGATGATCAAGATTGGATCTCTGGTGATGATGGGGGCACAATCAGGTATTGGAAGAGTAACATGATTAATGTGCTAGTCAATGAATCTGCTCACCATGAATCGGTTCGGGACCTGGGCTTCTGTCGGACTAATTTGAAGTTTTGTTCATGTTCCGATGATACTACGGTTAAAATCTGGGATTTTGAACGGTGCCAACAGGAGAAGACATTGACCGGCCATGGTTGGAATGTGACGAGTGTTGACTGGCACCCCACAAACTCTCTGATAGCTTCGGGTGGGTGGGACAGTGTTGTCAAACTGTGGGATGCTAGGTCAGGGAGAGAACTCTGTTCTTTTTACGATCACAAAAATTGGGTGCATTCTGTCAAGTGGAACCGAAATGGTAACTGGCTGCTAACTGCTTCCAATGATCAAGTCATTAAGCTTTACGACTTGAGGGCTATGAAGGAACTTAGATCTTTCCGCGGCCATCAGAACAAAGTGACTGCTCTAGCTTGGCATCCTCTTACCGAAGATTATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATCATACTCCCCAGGTTGAAATTCCTAATGCACACACTAACAGTTACAATAATAATAGTGTGTGGGATCTCCAGTGGCATCCTATTGGTCATATGATTTGTAGTGGTAGCAATGATCGCACTACCAAGTTTTGGTGCAGAACAGGAGATAAATCTCAAATCACTCAGAATCAAAGTAATTCTGCTTTTACTTGTCACATGAACAGTAATTTTCCTTTTCCATGTCACGGACCACCAACTATTGCTACTACTCGAGACGAAGGAACCATTGGTTCAGGAGGTGTTGGAACCATTATACCTGGTGTTGGAATTGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

380

Amino Acids

43.09

Weight (kDa)

7.68

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Gbeta	PF25391	23 - 239	4.2e-20	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	26 - 194	9.8e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	30 - 180	4.3e-21	WDR3 first beta-propeller domain
Beta-prop_IFT140_1st	PF23383	31 - 114	4.6e-09	IFT140 first beta-propeller
Beta-prop_WDR5	PF25175	33 - 123	2.3e-08	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	34 - 105	2.9e-07	THOC3 beta-propeller domain
Beta-prop_EIPR1	PF23609	35 - 186	3.3e-07	EIPR1 beta-propeller
WD40_Prp19	PF24814	36 - 238	1.9e-29	Prp19 WD40 domain
EIF3I	PF24805	68 - 154	4.1e-08	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	77 - 246	8.8e-12	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	80 - 249	2.7e-15	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	98 - 230	5.3e-29	WDR5 beta-propeller domain
WDR55	PF24796	108 - 271	6.2e-17	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	112 - 271	1.7e-17	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	115 - 181	4.8e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	115 - 188	3.1e-09	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	116 - 194	1.6e-17	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	119 - 194	2.9e-10	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	128 - 273	6.6e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	131 - 220	7.1e-08	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	134 - 229	1.6e-06	SCAP Beta-propeller
WD40	PF00400	150 - 187	6.3e-11	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	152 - 319	1.3e-25	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	153 - 234	7.7e-11	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	154 - 319	4.9e-12	EIF3I
Beta-prop_EML	PF23409	156 - 261	3.3e-08	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	165 - 320	2.7e-06	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	182 - 320	4.9e-08	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	192 - 333	5.3e-20	CDC20/Fizzy WD40 domain
WD40	PF00400	192 - 229	1.1e-07	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	194 - 323	6.4e-11	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	197 - 282	3.7e-15	WDR5 beta-propeller domain
Beta-prop_DCAF4	PF23761	199 - 257	7e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	200 - 333	2.8e-24	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	203 - 316	2e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	204 - 314	1.2e-12	WDHD1 first WD40 domain
WD40	PF00400	234 - 271	6.8e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	235 - 339	6.3e-10	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccB1I	GGYRCC	2 cut(s)	444, 501
AccB7I	CCANNNNNTGG	2 cut(s)	246, 954
AccII	CGCG	1 cut(s)	720
AciI	CCGC	4 cut(s)	16, 718, 720, 1136
AclWI	GGATC	4 cut(s)	278, 792, 805, 897
AcoI	YGGCCR	2 cut(s)	469, 721
AcsI	RAATTY	1 cut(s)	843
AcyI	GRCGYC	2 cut(s)	125, 139
AfiI	CCNNNNNNNGG	5 cut(s)	246, 355, 954, 1049, 1127
AgsI	TTSAA	4 cut(s)	196, 391, 440, 842
AjnI	CCWGG	3 cut(s)	366, 834, 1120
AjuI	GAANNNNNNNTTGG	2 cut(s)	1074, 1106
AluBI	AGCT	3 cut(s)	524, 679, 749
AluI	AGCT	3 cut(s)	524, 679, 749
Alw26I	GTCTC	1 cut(s)	1071
AlwI	GGATC	4 cut(s)	278, 792, 805, 897
Ama87I	CYCGRG	1 cut(s)	1074
AoxI	GGCC	3 cut(s)	3, 469, 721
ApeKI	GCWGC	2 cut(s)	56, 646
ApoI	RAATTY	1 cut(s)	843
AseI	ATTAAT	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	4 cut(s)	4, 237, 364, 1052
AsuHPI	GGTGA	3 cut(s)	197, 290, 338
AvaI	CYCGRG	1 cut(s)	1074
AvaII	GGWCC	3 cut(s)	237, 364, 1052
BaeGI	GKGCMC	1 cut(s)	293
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BamHI	GGATCC	1 cut(s)	797
BanI	GGYRCC	2 cut(s)	444, 501
BanII	GRGCYC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	43, 633
BccI	CCATC	4 cut(s)	15, 278, 732, 788
BciT130I	CCWGG	3 cut(s)	368, 836, 1122
BclI	TGATCA	3 cut(s)	223, 259, 664
BcoDI	GTCTC	1 cut(s)	1071
BfaI	CTAG	3 cut(s)	329, 564, 746
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	3 cut(s)	57, 647, 721
BlsI	GCNGC	3 cut(s)	58, 648, 722
Bme1390I	CCNGG	3 cut(s)	368, 836, 1122
Bme18I	GGWCC	3 cut(s)	237, 364, 1052
BmeT110I	CYCGRG	1 cut(s)	1074
BmgT120I	GGNCC	4 cut(s)	4, 237, 364, 1052
BmiI	GGNNCC	7 cut(s)	365, 446, 503, 629, 799, 1087, 1111
BmrFI	CCNGG	3 cut(s)	368, 836, 1122
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	4 cut(s)	550, 763, 832, 910
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	709
BsaHI	GRCGYC	2 cut(s)	125, 139
BsaJI	CCNNGG	5 cut(s)	240, 367, 472, 718, 834
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 355, 954, 1049, 1127
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	4 cut(s)	61, 503, 647, 895
Bse3DI	GCAATG	1 cut(s)	940
BseBI	CCWGG	3 cut(s)	368, 836, 1122
BseDI	CCNNGG	5 cut(s)	240, 367, 472, 718, 834
BseGI	GGATG	3 cut(s)	565, 754, 901
BseLI	CCNNNNNNNGG	5 cut(s)	246, 355, 954, 1049, 1127
BseMI	GCAATG	1 cut(s)	940
BseMII	CTCAG	1 cut(s)	1001
BseNI	ACTGG	4 cut(s)	61, 503, 647, 895
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	43, 633
BsgI	GTGCAG	1 cut(s)	979
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	3 cut(s)	5, 471, 723
BshNI	GGYRCC	2 cut(s)	444, 501
BsiHKCI	CYCGRG	1 cut(s)	1074
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	377, 551
BslI	CCNNNNNNNGG	5 cut(s)	246, 355, 954, 1049, 1127
BsmAI	GTCTC	1 cut(s)	1071
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	2 cut(s)	377, 551
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	5, 471, 723
BsoBI	CYCGRG	1 cut(s)	1074
Bsp1286I	GDGCHC	2 cut(s)	94, 293
Bsp19I	CCATGG	2 cut(s)	240, 472
BspACI	CCGC	4 cut(s)	16, 718, 720, 1136
BspANI	GGCC	3 cut(s)	5, 471, 723
BspCNI	CTCAG	1 cut(s)	1000
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	7 cut(s)	365, 446, 503, 629, 799, 1087, 1111
BspPI	GGATC	4 cut(s)	278, 792, 805, 897
BspT107I	GGYRCC	2 cut(s)	444, 501
BsrDI	GCAATG	1 cut(s)	940
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	61, 503, 647, 895
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	5 cut(s)	240, 367, 472, 718, 834
BssNI	GRCGYC	2 cut(s)	125, 139
BssT1I	CCWWGG	2 cut(s)	240, 472
Bst2UI	CCWGG	3 cut(s)	368, 836, 1122
Bst4CI	ACNGT	6 cut(s)	421, 444, 542, 555, 866, 1028
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	2 cut(s)	125, 139
BstDEI	CTNAG	2 cut(s)	707, 987
BstDSI	CCRYGG	3 cut(s)	240, 472, 718
BstF5I	GGATG	3 cut(s)	565, 754, 901
BstFNI	CGCG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	1071
BstMWI	GCNNNNNNNGC	2 cut(s)	820, 939
BstNI	CCWGG	3 cut(s)	368, 836, 1122
BstSCI	CCNGG	3 cut(s)	366, 834, 1120
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	43, 633
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	4 cut(s)	270, 710, 797, 889
BstYI	RGATCY	4 cut(s)	270, 710, 797, 889
BsuRI	GGCC	3 cut(s)	5, 471, 723
BtgI	CCRYGG	3 cut(s)	240, 472, 718
BtsCI	GGATG	3 cut(s)	565, 754, 901
BtsIMutI	CAGTG	3 cut(s)	547, 787, 902
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	4 cut(s)	4, 237, 364, 1052
Cfr42I	CCGCGG	1 cut(s)	721
CseI	GACGC	2 cut(s)	128, 133
CsiI	ACCWGGT	1 cut(s)	1120
CviAII	CATG	8 cut(s)	221, 241, 316, 350, 402, 473, 1021, 1044
DdeI	CTNAG	2 cut(s)	707, 987
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	2 cut(s)	469, 721
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	2 cut(s)	240, 472
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	3 cut(s)	237, 364, 1052
Eco88I	CYCGRG	1 cut(s)	1074
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	3 cut(s)	366, 834, 1120
EcoT14I	CCWWGG	2 cut(s)	240, 472
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	2 cut(s)	240, 472
Esp3I	CGTCTC	1 cut(s)	1071
FaeI	CATG	8 cut(s)	224, 244, 319, 353, 405, 476, 1024, 1047
FaqI	GGGAC	2 cut(s)	377, 551
FatI	CATG	8 cut(s)	220, 240, 315, 349, 401, 472, 1020, 1043
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	3 cut(s)	223, 259, 664
Fnu4HI	GCNGC	3 cut(s)	57, 647, 721
FokI	GGATG	3 cut(s)	572, 741, 888
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	57, 647, 721
FspBI	CTAG	3 cut(s)	329, 564, 746
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	57, 647, 721
GsuI	CTGGAG	1 cut(s)	878
HaeIII	GGCC	3 cut(s)	5, 471, 723
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	2 cut(s)	128, 133
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	2 cut(s)	125, 139
Hin1II	CATG	8 cut(s)	224, 244, 319, 353, 405, 476, 1024, 1047
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	5 cut(s)	188, 211, 338, 353, 991
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	197, 290, 338
Hpy166II	GTNNAC	2 cut(s)	171, 496
Hpy188I	TCNGA	5 cut(s)	381, 409, 519, 729, 990
Hpy188III	TCNNGA	6 cut(s)	178, 221, 263, 362, 1076, 1098
Hpy8I	GTNNAC	2 cut(s)	171, 496
HpyAV	CCTTC	3 cut(s)	138, 694, 1076
HpyCH4III	ACNGT	6 cut(s)	421, 444, 542, 555, 866, 1028
HpyCH4V	TGCA	4 cut(s)	78, 613, 854, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	820, 939
HpyF3I	CTNAG	2 cut(s)	707, 987
Hsp92I	GRCGYC	2 cut(s)	125, 139
Hsp92II	CATG	8 cut(s)	224, 244, 319, 353, 405, 476, 1024, 1047
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	223, 259, 664
KspI	CCGCGG	1 cut(s)	721
Lsp1109I	GCAGC	2 cut(s)	43, 633
LweI	GCATC	4 cut(s)	550, 763, 832, 910
MabI	ACCWGGT	1 cut(s)	1120
MaeI	CTAG	3 cut(s)	329, 564, 746
MaeIII	GTNAC	7 cut(s)	311, 484, 638, 736, 866, 1016, 1046
MboII	GAAGA	5 cut(s)	24, 93, 319, 469, 779
MflI	RGATCY	4 cut(s)	270, 710, 797, 889
MhlI	GDGCHC	2 cut(s)	94, 293
MluCI	AATT	8 cut(s)	82, 203, 385, 604, 843, 1000, 1030, 1131
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	4 cut(s)	359, 458, 1087, 1108
MnlI	CCTC	5 cut(s)	129, 201, 684, 768, 1094
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	5 cut(s)	39, 321, 423, 675, 1141
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	368, 836, 1122
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	3 cut(s)	368, 836, 1122
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	820, 939
NcoI	CCATGG	2 cut(s)	240, 472
NdeI	CATATG	1 cut(s)	915
NlaIII	CATG	8 cut(s)	224, 244, 319, 353, 405, 476, 1024, 1047
NlaIV	GGNNCC	7 cut(s)	365, 446, 503, 629, 799, 1087, 1111
NmuCI	GTSAC	4 cut(s)	484, 736, 1016, 1046
PaeR7I	CTCGAG	1 cut(s)	1074
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	211, 338, 353, 991
PflMI	CCANNNNNTGG	2 cut(s)	246, 954
PkrI	GCNGC	3 cut(s)	58, 648, 722
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	3 cut(s)	366, 834, 1120
PspGI	CCWGG	3 cut(s)	366, 834, 1120
PspN4I	GGNNCC	7 cut(s)	365, 446, 503, 629, 799, 1087, 1111
PspPI	GGNCC	4 cut(s)	4, 237, 364, 1052
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	4 cut(s)	270, 710, 797, 889
SacII	CCGCGG	1 cut(s)	721
SaqAI	TTAA	5 cut(s)	39, 321, 423, 675, 1141
SatI	GCNGC	3 cut(s)	57, 647, 721
Sau96I	GGNCC	4 cut(s)	4, 237, 364, 1052
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	3 cut(s)	368, 836, 1122
SduI	GDGCHC	2 cut(s)	94, 293
SexAI	ACCWGGT	1 cut(s)	1120
SfaNI	GCATC	4 cut(s)	550, 763, 832, 910
Sfr274I	CTCGAG	1 cut(s)	1074
Sfr303I	CCGCGG	1 cut(s)	721
SgrBI	CCGCGG	1 cut(s)	721
SinI	GGWCC	3 cut(s)	237, 364, 1052
SlaI	CTCGAG	1 cut(s)	1074
SmlI	CTYRAG	2 cut(s)	688, 1074
SmoI	CTYRAG	2 cut(s)	688, 1074
Sse9I	AATT	8 cut(s)	82, 203, 385, 604, 843, 1000, 1030, 1131
SsiI	CCGC	4 cut(s)	16, 718, 720, 1136
SspMI	CTAG	3 cut(s)	329, 564, 746
StyD4I	CCNGG	3 cut(s)	366, 834, 1120
StyI	CCWWGG	2 cut(s)	240, 472
TaaI	ACNGT	6 cut(s)	421, 444, 542, 555, 866, 1028
TaqI	TCGA	4 cut(s)	35, 104, 112, 1075
TasI	AATT	8 cut(s)	82, 203, 385, 604, 843, 1000, 1030, 1131
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	4 cut(s)	211, 338, 353, 991
Tru1I	TTAA	5 cut(s)	39, 321, 423, 675, 1141
Tru9I	TTAA	5 cut(s)	39, 321, 423, 675, 1141
TscAI	CASTG	3 cut(s)	547, 787, 902
TseFI	GTSAC	4 cut(s)	484, 736, 1016, 1046
TseI	GCWGC	2 cut(s)	56, 646
Tsp45I	GTSAC	4 cut(s)	484, 736, 1016, 1046
TspDTI	ATGAA	6 cut(s)	216, 351, 366, 390, 713, 1037
TspGWI	ACGGA	1 cut(s)	1065
TspRI	CASTG	3 cut(s)	547, 787, 902
Van91I	CCANNNNNTGG	2 cut(s)	246, 954
VpaK11BI	GGWCC	3 cut(s)	237, 364, 1052
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	1 cut(s)	843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XhoI	CTCGAG	1 cut(s)	1074
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	3 cut(s)	329, 564, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.