Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

7033253 .. 7034593

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTTCCAGAGAATCATCACCACCCCTACGCCCCTGCTGGTCCTCATGCTCCTCCTCATGTCGATGGCTTTGGTGCAATAAGAAACAGAAAGCAGACCCAGACAAGGACAGTTGATTACACTACCTCTGTCGTGCAATACACACAGACTCGAAAGCGGCAGCGTGATGCAAGGGATACAACAGTGTTGCAACCTACACCAGCAGCATCAATCAATTCGTTGCCGCCGGTTGCGTATTCGGATAACCCATCTAGGAGCTTTGCTGCAAAGTTTGTGCATGCTTGTACAAATTACAGAGCCCGTACTTGTCCGATTAATCGGGTTTTGTGGACACCTTCTGGGAGGCGTCTCATTACAGGGTCGCAAAATGGGGAGTTCACTCTTTGGGATGGTCAGTCATTTAACTATGAATTGAGTTTTCTGGCTCATGATCAAGCAGTCAGGTCTATGGTGTGGAGTTATGATGGTGAGAATTGGATTTCTGGTGATGATGGGGGAGCAATAAAGTATTGGACGAGTAACATGAACAATGTGCTAGTCAATGAATCTGCTCACCGAGAATCGGTTCGGGACTTGAGCTTTTGTAGGACTAATTTGAAGTTCTGTTCATGTTCGGATGATACTTATGTGAAAATCTGGGATTATGAAAGGTGCCAAGAAGAGTTCAGATTGACTGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCCTTACTAGCTTCAGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGACAGGGAGAGAGCTTTGTTCATTTCATGATCACAAAAATTGGGTGCAATCTGTTAAGTGGAGCCGAAATGGTAACTGGCTGCTAACTGCTTCCAAGGATCAAGTCATTAAGCTTTACGACATGAGGGCTATGAAGGAACTTGAATCATTCCACGGGCATCGGAATGAAGTGACTGCTATAGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAGTTCCTAATGCACACAGTAACAATCACAATAACAGTGTGTGGGATCTCCAATGGCATCCTATTGGTCATATGCTTTGCAGTGGTAGCAATGATCGCACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGATCAATGTAACATCAGTCAGAATCAAAGTATTGGTGATCGAAGTTCTGCTTTTGCTGGTCACATGACTGGTAATTTTCCATTTCCATTACATGAAGGACAACCAAAAATTGCTACTCGAAACCAAGGAACCATTATTCCAGGTGTTGGATTTGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

446

Amino Acids

50.68

Weight (kDa)

8.29

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	89 - 216	6.1e-06	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	96 - 219	1.6e-15	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	96 - 273	2.9e-28	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	97 - 265	4.5e-23	CDC20/Fizzy WD40 domain
Beta-prop_IFT140_1st	PF23383	100 - 189	5.4e-08	IFT140 first beta-propeller
Beta-prop_WDR3_1st	PF25173	102 - 216	7.7e-17	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	104 - 308	2.3e-18	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	107 - 264	2.5e-15	WDHD1 first WD40 domain
WD40_Prp19	PF24814	113 - 307	8.6e-31	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	133 - 256	2.8e-13	WDR3 second beta-propeller domain
EIF3I	PF24805	139 - 218	3.5e-07	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	141 - 251	2.7e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	147 - 319	1e-15	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	168 - 279	1.4e-20	WDR5 beta-propeller domain
Beta-prop_EIPR1	PF23609	172 - 297	3.9e-06	EIPR1 beta-propeller
WDR55	PF24796	175 - 340	2.4e-17	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	180 - 340	1.6e-17	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	197 - 340	7.2e-22	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	201 - 289	3.4e-08	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	203 - 299	4e-06	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	212 - 340	9.1e-28	WDR3 first beta-propeller domain
WD40	PF00400	222 - 256	1.3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	223 - 343	7.6e-13	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	224 - 305	2.6e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	225 - 330	3.8e-09	Echinoderm microtubule-associated protein first beta-propeller
EIF3I	PF24805	225 - 386	4.8e-14	EIF3I
Beta-prop_IFT140_1st	PF23383	227 - 295	8e-07	IFT140 first beta-propeller
Beta-prop_Aladin	PF25460	230 - 340	1.5e-07	Aladin seven-bladed propeller
WD40_MABP1-WDR62_2nd	PF24782	231 - 387	1.7e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	234 - 384	1.9e-07	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	247 - 388	3.5e-10	WDR36/Utp21 first beta-propeller
Beta-prop_EIPR1	PF23609	258 - 387	1.6e-07	EIPR1 beta-propeller
WD40_CDC20-Fz	PF24807	261 - 391	1.1e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	261 - 298	5e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	267 - 388	1.3e-19	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	269 - 387	3.7e-21	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	273 - 399	5e-13	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	285 - 380	7.1e-07	WDR90/POC16, second beta-propeller
WD40	PF00400	303 - 340	6.9e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	304 - 387	7.4e-10	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
AccB1I	GGYRCC	2 cut(s)	651, 708
AccB7I	CCANNNNNTGG	1 cut(s)	1325
AciI	CCGC	2 cut(s)	157, 224
AclWI	GGATC	4 cut(s)	879, 999, 1012, 1101
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	2 cut(s)	286, 304
AfiI	CCNNNNNNNGG	3 cut(s)	105, 562, 1325
AgsI	TTSAA	3 cut(s)	598, 917, 1049
AjnI	CCWGG	3 cut(s)	1041, 1174, 1318
AloI	GAACNNNNNNTCC	2 cut(s)	1300, 1332
AluBI	AGCT	6 cut(s)	258, 579, 731, 787, 886, 956
AluI	AGCT	6 cut(s)	258, 579, 731, 787, 886, 956
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	4 cut(s)	879, 999, 1012, 1101
AoxI	GGCC	2 cut(s)	676, 1172
ApeKI	GCWGC	4 cut(s)	160, 203, 263, 853
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	5 cut(s)	11, 479, 497, 545, 1226
AvaII	GGWCC	1 cut(s)	41
BaeI	ACNNNNGTAYC	4 cut(s)	168, 201, 612, 645
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	1004
BanI	GGYRCC	2 cut(s)	651, 708
BanII	GRGCYC	1 cut(s)	301
BbvI	GCAGC	4 cut(s)	172, 215, 250, 840
BccI	CCATC	6 cut(s)	59, 256, 383, 458, 485, 995
BciT130I	CCWGG	3 cut(s)	1043, 1176, 1320
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	2 cut(s)	430, 802
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	4 cut(s)	252, 536, 728, 771
BfmI	CTRYAG	1 cut(s)	951
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
BlsI	GCNGC	6 cut(s)	159, 162, 205, 225, 265, 855
Bme1390I	CCNGG	3 cut(s)	1043, 1176, 1320
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
BmrFI	CCNGG	3 cut(s)	1043, 1176, 1320
BmsI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
BpuEI	CTTGAG	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	5 cut(s)	679, 867, 925, 1041, 1303
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 562, 1325
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	4 cut(s)	679, 710, 854, 1252
Bse3DI	GCAATG	1 cut(s)	1144
BseBI	CCWGG	3 cut(s)	1043, 1176, 1320
BseDI	CCNNGG	5 cut(s)	679, 867, 925, 1041, 1303
BseGI	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	105, 562, 1325
BseMI	GCAATG	1 cut(s)	1144
BseNI	ACTGG	4 cut(s)	679, 710, 854, 1252
BseRI	GAGGAG	2 cut(s)	42, 45
BseXI	GCAGC	4 cut(s)	172, 215, 250, 840
BsgI	GTGCAG	1 cut(s)	1183
BshFI	GGCC	2 cut(s)	678, 1174
BshNI	GGYRCC	2 cut(s)	651, 708
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	105, 562, 1325
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	678, 1174
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	2 cut(s)	157, 224
BspANI	GGCC	2 cut(s)	678, 1174
BspHI	TCATGA	3 cut(s)	427, 799, 970
BspLI	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
BspPI	GGATC	4 cut(s)	879, 999, 1012, 1101
BspT107I	GGYRCC	2 cut(s)	651, 708
BsrDI	GCAATG	1 cut(s)	1144
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	4 cut(s)	679, 710, 854, 1252
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	5 cut(s)	679, 867, 925, 1041, 1303
BssMI	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	3 cut(s)	679, 867, 1303
Bst2UI	CCWGG	3 cut(s)	1043, 1176, 1320
Bst4CI	ACNGT	6 cut(s)	112, 184, 749, 762, 1067, 1085
Bst6I	CTCTTC	2 cut(s)	654, 689
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	279
BstDSI	CCRYGG	2 cut(s)	679, 925
BstF5I	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BstKTI	GATC	8 cut(s)	433, 805, 874, 1007, 1096, 1144, 1183, 1219
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
BstMWI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
BstNI	CCWGG	3 cut(s)	1043, 1176, 1320
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	1041, 1174, 1318
BstSFI	CTRYAG	1 cut(s)	951
BstV1I	GCAGC	4 cut(s)	172, 215, 250, 840
BstX2I	RGATCY	2 cut(s)	1004, 1093
BstYI	RGATCY	2 cut(s)	1004, 1093
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	678, 1174
BtgI	CCRYGG	2 cut(s)	679, 925
BtsCI	GGATG	5 cut(s)	394, 622, 772, 961, 1105
BtsI	GCAGTG	1 cut(s)	1135
BtsIMutI	CAGTG	5 cut(s)	189, 754, 994, 1090, 1135
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	3 cut(s)	427, 799, 970
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	285, 303
CviQI	GTAC	2 cut(s)	285, 303
DpnI	GATC	8 cut(s)	432, 804, 873, 1006, 1095, 1143, 1182, 1218
DpnII	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	654, 689
EarI	CTCTTC	2 cut(s)	654, 689
Eco130I	CCWWGG	3 cut(s)	679, 867, 1303
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	717
EcoRII	CCWGG	3 cut(s)	1041, 1174, 1318
EcoT14I	CCWWGG	3 cut(s)	679, 867, 1303
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	3 cut(s)	679, 867, 1303
Esp3I	CGTCTC	1 cut(s)	353
FalI	AAGNNNNNCTT	2 cut(s)	1213, 1245
FaqI	GGGAC	1 cut(s)	584
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	2 cut(s)	430, 802
Fnu4HI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
FokI	GGATG	5 cut(s)	401, 629, 779, 948, 1092
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
FspBI	CTAG	4 cut(s)	252, 536, 728, 771
GluI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
HaeIII	GGCC	2 cut(s)	678, 1174
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	6 cut(s)	13, 148, 545, 560, 917, 1201
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	5 cut(s)	11, 479, 497, 545, 1226
Hpy166II	GTNNAC	3 cut(s)	330, 378, 703
Hpy188I	TCNGA	6 cut(s)	241, 312, 616, 668, 936, 1200
Hpy188III	TCNNGA	5 cut(s)	8, 428, 569, 800, 971
Hpy8I	GTNNAC	3 cut(s)	330, 378, 703
HpyAV	CCTTC	3 cut(s)	345, 901, 1268
HpyCH4III	ACNGT	6 cut(s)	112, 184, 749, 762, 1067, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
Hsp92I	GRCGYC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	430, 802
Kzo9I	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
LmnI	GCTCC	4 cut(s)	55, 255, 497, 834
Lsp1109I	GCAGC	4 cut(s)	172, 215, 250, 840
LweI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
MaeI	CTAG	4 cut(s)	252, 536, 728, 771
MaeIII	GTNAC	6 cut(s)	518, 845, 943, 1067, 1187, 1238
MalI	GATC	8 cut(s)	432, 804, 873, 1006, 1095, 1143, 1182, 1218
MboI	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
MboII	GAAGA	3 cut(s)	671, 706, 986
MflI	RGATCY	2 cut(s)	1004, 1093
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	9 cut(s)	214, 289, 410, 472, 592, 811, 1252, 1287, 1335
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	665, 1306
MnlI	CCTC	6 cut(s)	54, 63, 66, 136, 336, 891
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	5 cut(s)	315, 402, 828, 882, 1339
MslI	CAYNNNNRTG	2 cut(s)	63, 936
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	1043, 1176, 1320
MvaI	CCWGG	3 cut(s)	1043, 1176, 1320
MwoI	GCNNNNNNNGC	3 cut(s)	1027, 1134, 1143
NcoI	CCATGG	1 cut(s)	679
NdeI	CATATG	1 cut(s)	1119
NdeII	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
NlaIV	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
NmuCI	GTSAC	2 cut(s)	943, 1238
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	3 cut(s)	427, 799, 970
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	5 cut(s)	13, 545, 560, 917, 1201
PflMI	CCANNNNNTGG	1 cut(s)	1325
PkrI	GCNGC	6 cut(s)	159, 162, 205, 225, 265, 855
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	1041, 1174, 1318
PspGI	CCWGG	3 cut(s)	1041, 1174, 1318
PspN4I	GGNNCC	6 cut(s)	6, 653, 710, 836, 1006, 1309
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	1004, 1093
RsaI	GTAC	2 cut(s)	286, 304
RsaNI	GTAC	2 cut(s)	285, 303
RseI	CAYNNNNRTG	2 cut(s)	63, 936
SaqAI	TTAA	5 cut(s)	315, 402, 828, 882, 1339
SatI	GCNGC	6 cut(s)	158, 161, 204, 224, 264, 854
Sau3AI	GATC	8 cut(s)	430, 802, 871, 1004, 1093, 1141, 1180, 1216
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	1043, 1176, 1320
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	6 cut(s)	157, 215, 757, 940, 970, 1114
SfcI	CTRYAG	1 cut(s)	951
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	63, 936
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	9 cut(s)	214, 289, 410, 472, 592, 811, 1252, 1287, 1335
SsiI	CCGC	2 cut(s)	157, 224
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	4 cut(s)	252, 536, 728, 771
StyD4I	CCNGG	3 cut(s)	1041, 1174, 1318
StyI	CCWWGG	3 cut(s)	679, 867, 1303
TaaI	ACNGT	6 cut(s)	112, 184, 749, 762, 1067, 1085
TaqI	TCGA	4 cut(s)	63, 151, 1219, 1297
TasI	AATT	9 cut(s)	214, 289, 410, 472, 592, 811, 1252, 1287, 1335
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	2 cut(s)	160, 226
TfiI	GAWTC	5 cut(s)	13, 545, 560, 917, 1201
Tru1I	TTAA	5 cut(s)	315, 402, 828, 882, 1339
Tru9I	TTAA	5 cut(s)	315, 402, 828, 882, 1339
TscAI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
TseFI	GTSAC	2 cut(s)	943, 1238
TseI	GCWGC	4 cut(s)	160, 203, 263, 853
Tsp45I	GTSAC	2 cut(s)	943, 1238
TspRI	CASTG	5 cut(s)	189, 754, 994, 1090, 1135
Van91I	CCANNNNNTGG	1 cut(s)	1325
VpaK11BI	GGWCC	1 cut(s)	41
VspI	ATTAAT	1 cut(s)	315
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	4 cut(s)	252, 536, 728, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.