Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8299121.1

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 804

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8299121.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

gctcgtgatcatgcaatcaggtctatggcgtgttgttttgatgatgaggattggatctctggtgatgatggaggcacaatcaggtattggaagagtaacatgaataatgtgctagtcaatgaatctgctcaccaagaatcggttcgggacttgagcttttgtaggagtaatttgaagttttgttcatgttcggatgatgctactgttaaaatctgggattttgaacgggctatgaaggaacttgaatctttctgcgaccatgggaaccaagtgactgctctagcttggcatcctcttagtgaagaatattttgtcagtgggagtagtgatggatccattctccattggcttgttgggcatgaaactccccaggttgaaattcctaatgcacacagtaacagttacaataatagtgtctgggatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

142

Amino Acids

16.13

Weight (kDa)

4.67

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	62, 327, 340
AcsI	RAATTY	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	175, 224, 245, 377
AjnI	CCWGG	1 cut(s)	369
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	2 cut(s)	156, 284
AluI	AGCT	2 cut(s)	156, 284
AlwI	GGATC	3 cut(s)	62, 327, 340
ApoI	RAATTY	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	74, 122
BamHI	GGATCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	3
BccI	CCATC	2 cut(s)	62, 323
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	2 cut(s)	113, 281
Bme1390I	CCNGG	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	266, 334
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	187, 298
BpuEI	CTTGAG	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	259, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	259, 369
BseGI	GGATG	2 cut(s)	199, 289
BseLI	CCNNNNNNNGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	7, 54, 332, 421
Bsp19I	CCATGG	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	266, 334
BspPI	GGATC	3 cut(s)	62, 327, 340
BssECI	CCNNGG	2 cut(s)	259, 369
BssMI	GATC	4 cut(s)	7, 54, 332, 421
BssSI	CACGAG	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	205, 395, 401
Bst6I	CTCTTC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	199, 289
BstKTI	GATC	4 cut(s)	10, 57, 335, 424
BstMBI	GATC	4 cut(s)	7, 54, 332, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstX2I	RGATCY	3 cut(s)	54, 332, 421
BstYI	RGATCY	3 cut(s)	54, 332, 421
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	199, 289
BtsIMutI	CAGTG	1 cut(s)	322
CviAII	CATG	5 cut(s)	11, 100, 186, 260, 359
CviJI	RGCY	4 cut(s)	156, 230, 284, 349
CviKI_1	RGCY	4 cut(s)	156, 230, 284, 349
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	4 cut(s)	9, 56, 334, 423
DpnII	GATC	4 cut(s)	7, 54, 332, 421
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	5 cut(s)	14, 103, 189, 263, 362
FaiI	YATR	7 cut(s)	12, 26, 101, 187, 233, 261, 360
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	10, 99, 185, 259, 358
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	206, 276
FspBI	CTAG	2 cut(s)	113, 281
Hin1II	CATG	5 cut(s)	14, 103, 189, 263, 362
HinfI	GANTC	3 cut(s)	122, 137, 245
HphI	GGTGA	2 cut(s)	74, 122
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	5, 146
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	205, 395, 401
HpyCH4V	TGCA	2 cut(s)	14, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	5 cut(s)	14, 103, 189, 263, 362
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 54, 332, 421
LpnPI	CCDG	7 cut(s)	4, 45, 67, 199, 356, 383, 403
LweI	GCATC	2 cut(s)	187, 298
MaeI	CTAG	2 cut(s)	113, 281
MaeIII	GTNAC	4 cut(s)	95, 271, 395, 401
MalI	GATC	4 cut(s)	9, 56, 334, 423
MboI	GATC	4 cut(s)	7, 54, 332, 421
MboII	GAAGA	2 cut(s)	103, 314
MflI	RGATCY	3 cut(s)	54, 332, 421
MluCI	AATT	2 cut(s)	169, 378
MnlI	CCTC	3 cut(s)	40, 65, 303
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	4 cut(s)	7, 54, 332, 421
NlaIII	CATG	5 cut(s)	14, 103, 189, 263, 362
NlaIV	GGNNCC	2 cut(s)	266, 334
NmuCI	GTSAC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	122, 137, 245
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	266, 334
PsuI	RGATCY	3 cut(s)	54, 332, 421
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	7, 54, 332, 421
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	5 cut(s)	23, 86, 158, 286, 375
SfaNI	GCATC	2 cut(s)	187, 298
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	169, 378
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	2 cut(s)	113, 281
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	205, 395, 401
TasI	AATT	2 cut(s)	169, 378
TfiI	GAWTC	3 cut(s)	122, 137, 245
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	5 cut(s)	116, 135, 174, 248, 375
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	2 cut(s)	113, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.