FvH4_6g23330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000356
Physical Location & Seq
Reverse (-)
17334317 .. 17338614
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23330.t1

Sequence Viewer

Length: 378 bp
ATGTCGTCGTCGGTTGTTTGCTCTCCCTCGGCCTCCTCTTCACCGCTTCATTCTTCATGTGAATCTGATCCGCCATTCACAGATCTAGATCTTATTTCTCAAAAGTTAATGAACCAGAAAGCTTGTTGCTTCCAATCACAGGTTTGGGGGTTCAAATCAGCTACTCTAGCTTTAATGTTTAAGTTAGACCAGCTAATGAACTACTCACGCTTGCTGACTCAAAATGTCAGAAGGTTAAGAGTTTATGTGAATCTGATTCCCCTCAATTCGGATCTTAATATGCATACATCATTGCAGCTGCCTACTCAAGTACTCAAGGAAATCCTGGTGAGGCTGACCCAAATAACACAACATTCAATTCACAATCACACAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

8.82

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 71
AclWI GGATC 2 cut(s) 62, 279
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 139, 268
AgsI TTSAA 2 cut(s) 154, 357
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 5 cut(s) 122, 161, 170, 193, 298
AluI AGCT 5 cut(s) 122, 161, 170, 193, 298
AlwI GGATC 2 cut(s) 62, 279
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 295, 298
AsuHPI GGTGA 2 cut(s) 33, 340
BbvI GCAGC 2 cut(s) 285, 307
BciT130I CCWGG 1 cut(s) 326
BfaI CTAG 2 cut(s) 86, 167
BglII AGATCT 2 cut(s) 82, 88
BisI GCNGC 2 cut(s) 296, 299
BlsI GCNGC 2 cut(s) 297, 300
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 291, 299
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 268
Bse3DI GCAATG 1 cut(s) 290
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 139, 268
BseMI GCAATG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 285, 307
BshFI GGCC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 139, 268
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 4 cut(s) 67, 82, 88, 271
BspACI CCGC 2 cut(s) 44, 71
BspANI GGCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 62, 279
BsrDI GCAATG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 67, 82, 88, 271
Bst2UI CCWGG 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 212
BstKTI GATC 4 cut(s) 70, 85, 91, 274
BstMBI GATC 4 cut(s) 67, 82, 88, 271
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 285, 307
BstX2I RGATCY 3 cut(s) 82, 88, 271
BstYI RGATCY 3 cut(s) 82, 88, 271
BsuRI GGCC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 57
CviJI RGCY 7 cut(s) 32, 122, 161, 170, 193, 298, 334
CviKI_1 RGCY 7 cut(s) 32, 122, 161, 170, 193, 298, 334
CviQI GTAC 1 cut(s) 311
DpnI GATC 4 cut(s) 69, 84, 90, 273
DpnII GATC 4 cut(s) 67, 82, 88, 271
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 285
FaeI CATG 1 cut(s) 60
FaiI YATR 5 cut(s) 58, 246, 281, 285, 376
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 296, 299
Fsp4HI GCNGC 2 cut(s) 296, 299
FspBI CTAG 2 cut(s) 86, 167
GluI GCNGC 2 cut(s) 296, 299
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 4 cut(s) 62, 217, 250, 256
HphI GGTGA 2 cut(s) 33, 340
Hpy188I TCNGA 4 cut(s) 67, 230, 255, 271
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 283, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 4 cut(s) 67, 82, 88, 271
LpnPI CCDG 5 cut(s) 125, 128, 203, 311, 338
Lsp1109I GCAGC 2 cut(s) 285, 307
MaeI CTAG 2 cut(s) 86, 167
MalI GATC 4 cut(s) 69, 84, 90, 273
MboI GATC 4 cut(s) 67, 82, 88, 271
MboII GAAGA 2 cut(s) 30, 45
MflI RGATCY 3 cut(s) 82, 88, 271
MluCI AATT 2 cut(s) 265, 357
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 5 cut(s) 37, 43, 46, 272, 324
Mph1103I ATGCAT 1 cut(s) 285
MseI TTAA 5 cut(s) 107, 173, 180, 236, 276
MspA1I CMGCKG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 4 cut(s) 67, 82, 88, 271
NlaIII CATG 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 285
PfeI GAWTC 3 cut(s) 62, 250, 256
PkrI GCNGC 2 cut(s) 297, 300
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PsuI RGATCY 3 cut(s) 82, 88, 271
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 5 cut(s) 107, 173, 180, 236, 276
SatI GCNGC 2 cut(s) 296, 299
Sau3AI GATC 4 cut(s) 67, 82, 88, 271
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 326
SetI ASST 7 cut(s) 124, 144, 163, 172, 195, 236, 300
SmlI CTYRAG 2 cut(s) 306, 314
SmoI CTYRAG 2 cut(s) 306, 314
Sse9I AATT 2 cut(s) 265, 357
SsiI CCGC 2 cut(s) 44, 71
SspMI CTAG 2 cut(s) 86, 167
StyD4I CCNGG 1 cut(s) 324
TasI AATT 2 cut(s) 265, 357
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 3 cut(s) 62, 250, 256
Tru1I TTAA 5 cut(s) 107, 173, 180, 236, 276
Tru9I TTAA 5 cut(s) 107, 173, 180, 236, 276
TseI GCWGC 2 cut(s) 295, 298
TspDTI ATGAA 4 cut(s) 38, 45, 125, 212
XbaI TCTAGA 1 cut(s) 85
XspI CTAG 2 cut(s) 86, 167
ZrmI AGTACT 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.