Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Forward (+)

6527062 .. 6527665

Gene Structure 604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGGCTTTATCTCCTCCTCTATTTTCAACAATTGGATGGCCCTTGGAGGATTATCCCATAAGTCATGACCACAACAACTATTTCTCAGCAGAATCATCGCTTCTTCATTTTCCTACAACTCTGCAGCCACAGTTTGATCAGCTTGATCACTCTATGCCATCCACCGCAATCAGCGGCGAGTCCAACATTTCTTCAATGGCTAAGAAGCTTAACTACAATGCTAGTGAGCGTGACCGCCGCAAGAAGATCAACAATTTGTACTCATCACTACGTTCACTCGTTCCTGCCGATCATGCGAAAAAATTAAGCATTCCAGCCACAGTTTCGCGGGTGCTGAAATACATTCCAGAGCTCCAGCAGCAAGTGGAGGGACTAATTCAAAAAAGGGACGAGCTTTTGTCGAAAATTTCTCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

140

Amino Acids

15.85

Weight (kDa)

8.0

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	70 - 120	7.6e-13	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	5 cut(s)	168, 177, 238, 241, 331
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	30, 198, 383
AluBI	AGCT	4 cut(s)	145, 211, 355, 397
AluI	AGCT	4 cut(s)	145, 211, 355, 397
Alw21I	GWGCWC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	127, 361
ApoI	RAATTY	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	357
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	139, 373
BccI	CCATC	2 cut(s)	33, 169
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BclI	TGATCA	2 cut(s)	139, 148
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	4 cut(s)	128, 178, 241, 362
BlsI	GCNGC	4 cut(s)	129, 179, 242, 363
BmgT120I	GGNCC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	44, 161
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	2 cut(s)	6, 9
BseXI	GCAGC	2 cut(s)	139, 373
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	387, 404
BsmFI	GGGAC	2 cut(s)	387, 404
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	139, 148, 249, 292
BspACI	CCGC	5 cut(s)	168, 177, 238, 241, 331
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	139, 148, 249, 292
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	135, 325
BstDEI	CTNAG	3 cut(s)	88, 204, 414
BstF5I	GGATG	2 cut(s)	44, 161
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	4 cut(s)	142, 151, 252, 295
BstMBI	GATC	4 cut(s)	139, 148, 249, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 361
BstSFI	CTRYAG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	139, 373
BsuRI	GGCC	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	44, 161
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	68, 296
CviJI	RGCY	9 cut(s)	8, 43, 130, 145, 203, 211, 320, 355, 397
CviKI_1	RGCY	9 cut(s)	8, 43, 130, 145, 203, 211, 320, 355, 397
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	88, 204, 414
DpnI	GATC	4 cut(s)	141, 150, 251, 294
DpnII	GATC	4 cut(s)	139, 148, 249, 292
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	71, 299
FaiI	YATR	4 cut(s)	62, 69, 158, 297
FaqI	GGGAC	2 cut(s)	387, 404
FatI	CATG	2 cut(s)	67, 295
FauI	CCCGC	1 cut(s)	324
FbaI	TGATCA	2 cut(s)	139, 148
Fnu4HI	GCNGC	4 cut(s)	128, 178, 241, 362
FokI	GGATG	2 cut(s)	51, 148
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	4 cut(s)	128, 178, 241, 362
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	4 cut(s)	128, 178, 241, 362
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	71, 299
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	95, 182
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	68, 350
Hpy8I	GTNNAC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	135, 325
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 361
HpyF3I	CTNAG	3 cut(s)	88, 204, 414
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	71, 299
Ksp22I	TGATCA	2 cut(s)	139, 148
Kzo9I	GATC	4 cut(s)	139, 148, 249, 292
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	4 cut(s)	300, 330, 363, 371
Lsp1109I	GCAGC	2 cut(s)	139, 373
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	141, 150, 251, 294
MboI	GATC	4 cut(s)	139, 148, 249, 292
MboII	GAAGA	3 cut(s)	98, 186, 259
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	5 cut(s)	33, 256, 305, 378, 408
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	27, 30, 43, 364
MseI	TTAA	2 cut(s)	213, 308
MspA1I	CMGCKG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	312
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	296, 361
NdeII	GATC	4 cut(s)	139, 148, 249, 292
NlaIII	CATG	2 cut(s)	71, 299
NmuCI	GTSAC	1 cut(s)	233
PagI	TCATGA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	129, 179, 242, 363
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	213, 308
SatI	GCNGC	4 cut(s)	128, 178, 241, 362
Sau3AI	GATC	4 cut(s)	139, 148, 249, 292
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	147, 213, 277, 357, 399
SfcI	CTRYAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	33, 256, 305, 378, 408
SsiI	CCGC	5 cut(s)	168, 177, 238, 241, 331
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	135, 325
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	404
TasI	AATT	5 cut(s)	33, 256, 305, 378, 408
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	180, 243
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	213, 308
Tru9I	TTAA	2 cut(s)	213, 308
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	127, 361
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	98
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.