Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000356

Physical Location & Seq

Genomic Coordinates Reverse (-)

87308439 .. 87310676

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGCGGTTGTTACACGTGTCTCCCAAAGAACCCATTCCGCCGTAGTCCCGCCTTCGTTTTGTCTCCGGCTTGCCATTTCTTACTTCTGGTTTCTTCAGCCATCATTCCCAGTTTTGGGTTCTCTAGTAATTAATCTATGCCTCGGCATGTTGATTTTGGAAAGCACAGAACAACCGAACGAAGAAGATCATAACCGTCGATTCTCTCCTTCAACTATGGTTCCAGTGTATCACCACCCCTACGCCCCTGCTGGTCCCCATGCTCCTCCTCATGTCGATGGCTTTGGTGCAATAAGAGACAGAAAGCAGACCCAGAAAAGGACAGTTGATTACACTACCTCTGTCGTGCGATACACCCAGAGTCGAAAGCGGCAGCGTGATGCAAGGGATACAACAGTGTTGCAACCTACACCAGCAGCATCAATCAATTCGTTGCCGCCCGTTGCGTATTCGGATAACCCATCTAGGAGCTTTGCTGCAAAGTTTGTGCATGTTTGTACAAATTACAGAGCCCGTACTTCTCCGATTAATCGGGTTTTGTGGACACCTTCTGGGAGGCGTCTCATTACAGGGTCTCAAAATGGGGAGTTCACTCTTTGGGATGGTCAATCATTTAACTATGAATTGAGTTTCCTGGCTCATGATCAAGCAGTCAGGTCTATGGCGTGGAGTTATGATGGTGAGAATTGGATTTCTGGTGATGATGGGGGAGCAATAAAGTATTGGACGAGTAACATGAACAATGTGCTAGTCAATGAATCTGCTCACCGAGAATCAGTTCTGGACTTGAGCTTCTGTAGGACTAATTTGAAGTTCTGTTCATGTTCGGATGATACTTATGTGAAAATCTGGGATTATGAACGGTGCCAAGAAGTGCACAGATTGACTGGCCATGGTTGGAATGTGAAGAGTGTTGACTGGCACCCTACAAAGTCTCTAATAGCTTCAGGTGGGAAAGACAGTGTTGTCAAACTGTGGGATGCTAGGACAGGGAGAGAGCTTTGTTCATTACATGATCACAAAAATTGGGTGCAATCTGTTAAGTGGAACCGAAATGGTAACTGGCTGCTAACTGCTTCTAAGGATCAAGTCATTAAGCTTTACGACATGAGGGCGATGAAGGAACTTGAATCTTTCCGCGGGCATCGGAATGAAGTGACTGCTCTAGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTAGTGATGGATCCATTTTCCATTGGCTTGTTGGGCATGAAACTCCCCAGGTTGAAGTTCCTAATGCACACAGTAACAATCACAATAACAGTGTGTGGGATCTCCAATGGCATCCTATTGGTCATATGCTTTGCAGTGGCAGCAATGATCGCACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGATAAATCTAACATCAGTCAGAATCAAAGTATTGGTGATCAAAATTCTGCTTTTGCTGGTCACATGACTAGTAATTTTCCATTTCCATTTCATGTAGGACAACCAACAATTGCTACTCGAAATGAAGGAACCATTATTCCAGGTGTTGGATTTGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

WD40

Protein Analysis

517

Amino Acids

58.63

Weight (kDa)

8.6

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	160 - 287	7.7e-07	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	163 - 290	2.4e-16	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	164 - 336	4.2e-24	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	167 - 341	1.3e-28	THOC3 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	170 - 256	7.5e-08	IFT140 first beta-propeller
WD40_Gbeta	PF25391	170 - 379	5.7e-18	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	170 - 304	1e-19	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	177 - 335	1.3e-14	WDHD1 first WD40 domain
Beta-prop_EIPR1	PF23609	177 - 326	1.4e-06	EIPR1 beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	179 - 332	8e-10	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	183 - 379	9.5e-30	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	204 - 327	3.6e-15	WDR3 second beta-propeller domain
EIF3I	PF24805	210 - 293	6.4e-07	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	213 - 324	2.1e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	213 - 341	4.3e-08	TEP-1 second beta-propeller
WDR55	PF24796	246 - 411	1.7e-16	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	251 - 412	1.3e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	255 - 371	4.5e-28	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	268 - 411	1.2e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	272 - 359	2.2e-07	WDR90/POC16, second beta-propeller
WD40	PF00400	290 - 327	6e-09	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	291 - 411	1.8e-25	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	292 - 389	1.7e-11	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	295 - 413	9.4e-14	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	295 - 458	7e-28	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	295 - 375	3e-11	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	296 - 401	1.5e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_IFT140_1st	PF23383	296 - 367	9.7e-06	IFT140 first beta-propeller
EIF3I	PF24805	296 - 383	1.9e-10	EIF3I
Beta-prop_EIPR1	PF23609	301 - 368	5.8e-06	EIPR1 beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	302 - 458	1.6e-08	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	305 - 454	1.4e-06	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	317 - 459	2.8e-08	WDR36/Utp21 first beta-propeller
WD40	PF00400	332 - 369	1.6e-07	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	332 - 463	1.2e-21	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	340 - 461	2.9e-22	THOC3 beta-propeller domain
Beta-prop_DCAF4	PF23761	340 - 400	7.4e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_WDHD1_1st	PF24817	344 - 450	9.5e-13	WDHD1 first WD40 domain
Beta-prop_EIPR1	PF23609	354 - 458	2.5e-06	EIPR1 beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	356 - 451	4.4e-06	WDR90/POC16, second beta-propeller
WD40	PF00400	374 - 411	7.1e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	376 - 458	2.1e-09	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca	FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica	MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica	Prupe.2G034300_v2.0.a1
pyrus_communis	pycom02g24420 pycom07g02650
rosa_chinensis	RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata	RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora	Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa	Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha	Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana	Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	965
AccB1I	GGYRCC	2 cut(s)	864, 921
AccB7I	CCANNNNNTGG	1 cut(s)	1538
AccII	CGCG	1 cut(s)	1140
AciI	CCGC	7 cut(s)	5, 39, 50, 370, 437, 1138, 1140
AclWI	GGATC	4 cut(s)	1092, 1212, 1225, 1314
AcoI	YGGCCR	1 cut(s)	889
AcsI	RAATTY	1 cut(s)	1435
AcuI	CTGAAG	2 cut(s)	80, 930
AcvI	CACGTG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	559
AfaI	GTAC	2 cut(s)	499, 517
AfiI	CCNNNNNNNGG	4 cut(s)	115, 116, 318, 1538
AflIII	ACRYGT	2 cut(s)	14, 16
AgsI	TTSAA	4 cut(s)	213, 811, 1130, 1262
AhlI	ACTAGT	1 cut(s)	1460
AjnI	CCWGG	4 cut(s)	633, 1254, 1387, 1531
AloI	GAACNNNNNNTCC	2 cut(s)	1513, 1545
AluBI	AGCT	6 cut(s)	471, 792, 944, 1000, 1099, 1169
AluI	AGCT	6 cut(s)	471, 792, 944, 1000, 1099, 1169
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	6 cut(s)	25, 68, 291, 566, 579, 939
Alw44I	GTGCAC	1 cut(s)	875
AlwI	GGATC	4 cut(s)	1092, 1212, 1225, 1314
AoxI	GGCC	2 cut(s)	889, 1385
ApaLI	GTGCAC	1 cut(s)	875
ApeKI	GCWGC	5 cut(s)	373, 416, 476, 1066, 1347
ApoI	RAATTY	1 cut(s)	1435
AseI	ATTAAT	2 cut(s)	132, 528
Asp700I	GAANNNNTTC	2 cut(s)	34, 777
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	5 cut(s)	224, 692, 710, 758, 1439
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	879
BaeI	ACNNNNGTAYC	4 cut(s)	381, 414, 825, 858
BalI	TGGCCA	1 cut(s)	891
BamHI	GGATCC	1 cut(s)	1217
BanI	GGYRCC	2 cut(s)	864, 921
BanII	GRGCYC	1 cut(s)	514
BbrPI	CACGTG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	5 cut(s)	385, 428, 463, 1053, 1359
BccI	CCATC	7 cut(s)	109, 272, 469, 596, 671, 698, 1208
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	4 cut(s)	635, 1256, 1389, 1533
BciVI	GTATCC	1 cut(s)	382
BclI	TGATCA	3 cut(s)	643, 1015, 1429
BcoDI	GTCTC	6 cut(s)	25, 68, 291, 566, 579, 939
BcuI	ACTAGT	1 cut(s)	1460
BfaI	CTAG	6 cut(s)	125, 465, 749, 984, 1166, 1461
BfmI	CTRYAG	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	7 cut(s)	371, 374, 417, 437, 477, 1067, 1348
BlsI	GCNGC	7 cut(s)	372, 375, 418, 438, 478, 1068, 1349
Bme1390I	CCNGG	4 cut(s)	635, 1256, 1389, 1533
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	7 cut(s)	222, 256, 866, 923, 1049, 1219, 1522
BmrFI	CCNGG	4 cut(s)	635, 1256, 1389, 1533
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	6 cut(s)	370, 428, 970, 1153, 1183, 1327
BmuI	ACTGGG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	808
BsaAI	YACGTR	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	4 cut(s)	142, 892, 1138, 1254
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 116, 318, 1538
Bse1I	ACTGG	5 cut(s)	110, 224, 892, 923, 1067
Bse3DI	GCAATG	1 cut(s)	1357
BseBI	CCWGG	4 cut(s)	635, 1256, 1389, 1533
BseDI	CCNNGG	4 cut(s)	142, 892, 1138, 1254
BseGI	GGATG	5 cut(s)	607, 835, 985, 1174, 1318
BseLI	CCNNNNNNNGG	4 cut(s)	115, 116, 318, 1538
BseMI	GCAATG	1 cut(s)	1357
BseNI	ACTGG	5 cut(s)	110, 224, 892, 923, 1067
BseRI	GAGGAG	2 cut(s)	255, 258
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	5 cut(s)	385, 428, 463, 1053, 1359
BsgI	GTGCAG	1 cut(s)	1396
Bsh1236I	CGCG	1 cut(s)	1140
BshFI	GGCC	2 cut(s)	891, 1387
BshNI	GGYRCC	2 cut(s)	864, 921
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	2 cut(s)	32, 240
BslI	CCNNNNNNNGG	4 cut(s)	115, 116, 318, 1538
BsmAI	GTCTC	6 cut(s)	25, 68, 291, 566, 579, 939
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	2 cut(s)	32, 240
BsnI	GGCC	2 cut(s)	891, 1387
Bso31I	GGTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	514, 879
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	7 cut(s)	5, 39, 50, 370, 437, 1138, 1140
BspANI	GGCC	2 cut(s)	891, 1387
BspFNI	CGCG	1 cut(s)	1140
BspHI	TCATGA	2 cut(s)	640, 1183
BspLI	GGNNCC	7 cut(s)	222, 256, 866, 923, 1049, 1219, 1522
BspPI	GGATC	4 cut(s)	1092, 1212, 1225, 1314
BspT107I	GGYRCC	2 cut(s)	864, 921
BspTNI	GGTCTC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	1357
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	5 cut(s)	110, 224, 892, 923, 1067
BssECI	CCNNGG	4 cut(s)	142, 892, 1138, 1254
BssMI	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
BssNI	GRCGYC	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	892
Bst2UI	CCWGG	4 cut(s)	635, 1256, 1389, 1533
Bst4CI	ACNGT	8 cut(s)	197, 325, 397, 864, 962, 975, 1280, 1298
Bst6I	CTCTTC	1 cut(s)	902
BstACI	GRCGYC	1 cut(s)	559
BstAUI	TGTACA	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	72, 1142
BstDEI	CTNAG	1 cut(s)	1080
BstDSI	CCRYGG	2 cut(s)	892, 1138
BstF5I	GGATG	5 cut(s)	607, 835, 985, 1174, 1318
BstFNI	CGCG	1 cut(s)	1140
BstKTI	GATC	8 cut(s)	190, 646, 1018, 1087, 1220, 1309, 1357, 1432
BstMAI	GTCTC	6 cut(s)	25, 68, 291, 566, 579, 939
BstMBI	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
BstMWI	GCNNNNNNNGC	3 cut(s)	1240, 1347, 1356
BstNI	CCWGG	4 cut(s)	635, 1256, 1389, 1533
BstNSI	RCATGY	2 cut(s)	151, 494
BstSCI	CCNGG	4 cut(s)	633, 1254, 1387, 1531
BstSFI	CTRYAG	1 cut(s)	796
BstSLI	GKGCMC	1 cut(s)	879
BstUI	CGCG	1 cut(s)	1140
BstV1I	GCAGC	5 cut(s)	385, 428, 463, 1053, 1359
BstX2I	RGATCY	2 cut(s)	1217, 1306
BstYI	RGATCY	2 cut(s)	1217, 1306
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	891, 1387
BtgI	CCRYGG	2 cut(s)	892, 1138
BtgZI	GCGATG	1 cut(s)	1130
BtsCI	GGATG	5 cut(s)	607, 835, 985, 1174, 1318
BtsI	GCAGTG	1 cut(s)	1348
BtsIMutI	CAGTG	6 cut(s)	231, 402, 967, 1207, 1303, 1348
Cac8I	GCNNGC	2 cut(s)	72, 1142
CciI	TCATGA	2 cut(s)	640, 1183
Cfr13I	GGNCC	1 cut(s)	254
Cfr42I	CCGCGG	1 cut(s)	1141
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	498, 516
CviQI	GTAC	2 cut(s)	498, 516
DdeI	CTNAG	1 cut(s)	1080
DpnI	GATC	8 cut(s)	189, 645, 1017, 1086, 1219, 1308, 1356, 1431
DpnII	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
DrdI	GACNNNNNNGTC	1 cut(s)	965
DseDI	GACNNNNNNGTC	1 cut(s)	965
EaeI	YGGCCR	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	80, 930
Eco72I	CACGTG	1 cut(s)	17
EcoRII	CCWGG	4 cut(s)	633, 1254, 1387, 1531
EcoT14I	CCWWGG	1 cut(s)	892
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	892
Esp3I	CGTCTC	1 cut(s)	566
FaqI	GGGAC	2 cut(s)	32, 240
FauI	CCCGC	2 cut(s)	57, 1133
FauNDI	CATATG	1 cut(s)	1332
FbaI	TGATCA	3 cut(s)	643, 1015, 1429
Fnu4HI	GCNGC	7 cut(s)	371, 374, 417, 437, 477, 1067, 1348
FokI	GGATG	5 cut(s)	614, 842, 992, 1161, 1305
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	7 cut(s)	371, 374, 417, 437, 477, 1067, 1348
FspBI	CTAG	6 cut(s)	125, 465, 749, 984, 1166, 1461
GluI	GCNGC	7 cut(s)	371, 374, 417, 437, 477, 1067, 1348
HaeIII	GGCC	2 cut(s)	891, 1387
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	1 cut(s)	1097
HinfI	GANTC	6 cut(s)	201, 361, 758, 773, 1130, 1414
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	5 cut(s)	224, 692, 710, 758, 1439
Hpy166II	GTNNAC	4 cut(s)	543, 591, 877, 916
Hpy188I	TCNGA	5 cut(s)	454, 525, 829, 1149, 1413
Hpy188III	TCNNGA	3 cut(s)	641, 782, 1184
Hpy8I	GTNNAC	4 cut(s)	543, 591, 877, 916
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	5 cut(s)	63, 219, 558, 1114, 1511
HpyCH4III	ACNGT	8 cut(s)	197, 325, 397, 864, 962, 975, 1280, 1298
HpyCH4IV	ACGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1240, 1347, 1356
HpyF3I	CTNAG	1 cut(s)	1080
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	559
Ksp22I	TGATCA	3 cut(s)	643, 1015, 1429
KspI	CCGCGG	1 cut(s)	1141
Kzo9I	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
LmnI	GCTCC	3 cut(s)	268, 468, 710
Lsp1109I	GCAGC	5 cut(s)	385, 428, 463, 1053, 1359
LweI	GCATC	6 cut(s)	370, 428, 970, 1153, 1183, 1327
MaeI	CTAG	6 cut(s)	125, 465, 749, 984, 1166, 1461
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	6 cut(s)	10, 731, 1058, 1156, 1280, 1451
MalI	GATC	8 cut(s)	189, 645, 1017, 1086, 1219, 1308, 1356, 1431
MboI	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
MboII	GAAGA	5 cut(s)	86, 194, 197, 919, 1199
MfeI	CAATTG	1 cut(s)	1500
MflI	RGATCY	2 cut(s)	1217, 1306
MhlI	GDGCHC	2 cut(s)	514, 879
MlsI	TGGCCA	1 cut(s)	891
MluNI	TGGCCA	1 cut(s)	891
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	878, 1519
MnlI	CCTC	6 cut(s)	152, 276, 279, 349, 549, 1104
Mox20I	TGGCCA	1 cut(s)	891
MroXI	GAANNNNTTC	2 cut(s)	34, 777
MscI	TGGCCA	1 cut(s)	891
MseI	TTAA	6 cut(s)	132, 528, 615, 1041, 1095, 1552
MslI	CAYNNNNRTG	2 cut(s)	276, 1149
Msp20I	TGGCCA	1 cut(s)	891
MspA1I	CMGCKG	1 cut(s)	1140
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	4 cut(s)	635, 1256, 1389, 1533
MunI	CAATTG	1 cut(s)	1500
MvaI	CCWGG	4 cut(s)	635, 1256, 1389, 1533
MvnI	CGCG	1 cut(s)	1140
MwoI	GCNNNNNNNGC	3 cut(s)	1240, 1347, 1356
NcoI	CCATGG	1 cut(s)	892
NdeI	CATATG	1 cut(s)	1332
NdeII	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
NlaIV	GGNNCC	7 cut(s)	222, 256, 866, 923, 1049, 1219, 1522
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	1156, 1451
NspI	RCATGY	2 cut(s)	151, 494
PagI	TCATGA	2 cut(s)	640, 1183
PdmI	GAANNNNTTC	2 cut(s)	34, 777
PfeI	GAWTC	5 cut(s)	201, 758, 773, 1130, 1414
PflMI	CCANNNNNTGG	1 cut(s)	1538
PkrI	GCNGC	7 cut(s)	372, 375, 418, 438, 478, 1068, 1349
PleI	GAGTC	1 cut(s)	369
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	369
Ppu21I	YACGTR	1 cut(s)	17
PshBI	ATTAAT	2 cut(s)	132, 528
Psp6I	CCWGG	4 cut(s)	633, 1254, 1387, 1531
PspCI	CACGTG	1 cut(s)	17
PspGI	CCWGG	4 cut(s)	633, 1254, 1387, 1531
PspN4I	GGNNCC	7 cut(s)	222, 256, 866, 923, 1049, 1219, 1522
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	1217, 1306
RsaI	GTAC	2 cut(s)	499, 517
RsaNI	GTAC	2 cut(s)	498, 516
RseI	CAYNNNNRTG	2 cut(s)	276, 1149
SacII	CCGCGG	1 cut(s)	1141
SaqAI	TTAA	6 cut(s)	132, 528, 615, 1041, 1095, 1552
SatI	GCNGC	7 cut(s)	371, 374, 417, 437, 477, 1067, 1348
Sau3AI	GATC	8 cut(s)	187, 643, 1015, 1084, 1217, 1306, 1354, 1429
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	4 cut(s)	635, 1256, 1389, 1533
SduI	GDGCHC	2 cut(s)	514, 879
SfaNI	GCATC	6 cut(s)	370, 428, 970, 1153, 1183, 1327
SfcI	CTRYAG	1 cut(s)	796
Sfr303I	CCGCGG	1 cut(s)	1141
SgrBI	CCGCGG	1 cut(s)	1141
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	276, 1149
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
SpeI	ACTAGT	1 cut(s)	1460
SsiI	CCGC	7 cut(s)	5, 39, 50, 370, 437, 1138, 1140
SspI	AATATT	1 cut(s)	1193
SspMI	CTAG	6 cut(s)	125, 465, 749, 984, 1166, 1461
StyD4I	CCNGG	4 cut(s)	633, 1254, 1387, 1531
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	8 cut(s)	197, 325, 397, 864, 962, 975, 1280, 1298
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	4 cut(s)	199, 276, 364, 1510
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	2 cut(s)	373, 439
TfiI	GAWTC	5 cut(s)	201, 758, 773, 1130, 1414
Tru1I	TTAA	6 cut(s)	132, 528, 615, 1041, 1095, 1552
Tru9I	TTAA	6 cut(s)	132, 528, 615, 1041, 1095, 1552
TscAI	CASTG	6 cut(s)	231, 402, 967, 1207, 1303, 1348
TseFI	GTSAC	2 cut(s)	1156, 1451
TseI	GCWGC	5 cut(s)	373, 416, 476, 1066, 1347
Tsp45I	GTSAC	2 cut(s)	1156, 1451
TspRI	CASTG	6 cut(s)	231, 402, 967, 1207, 1303, 1348
Van91I	CCANNNNNTGG	1 cut(s)	1538
VneI	GTGCAC	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	254
VspI	ATTAAT	2 cut(s)	132, 528
XapI	RAATTY	1 cut(s)	1435
XceI	RCATGY	2 cut(s)	151, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1235
XmnI	GAANNNNTTC	2 cut(s)	34, 777
XspI	CTAG	6 cut(s)	125, 465, 749, 984, 1166, 1461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.