Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

16218953 .. 16223175

Gene Structure 4223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGGACATAAAGAAGAGAAAGCTGGACAACAATGAAAGAATCTCACCACATTCAGAGCAAGACTTGCGCGCCTTGCTTGACCCTCTCGCTAAGTCCCAGCTCGTCGATCTCCTCGCTAAACTGGGTTCCCAATATCCTTCAATTGCAGAGGAAATTAAGGGTATAGCCACTGCAGATCCCGTACACCGCAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCTTCTGATACTTTGTGTGCTGCGTTTAGTGAGTATGGAGAGATTGAGGAAGGAGCTGTCATCTATGACAAAGCGAGTGGGAAATCGCGGGGATATGGTTTCATTACTTATAAATATATGGAGTCAACTCACCGTGCACTCAGAGCTCCTAGCAAGTTAATTGATGGTCGCATGGCTGTTTGTAATCTAGCATGTGATGGGTTAACTGGTTCAAGTTCTACCCAGGATCTTACCCAGAGGAAACTCTACATTGGGGGCTTATCACCGAATGTCACAAGTGAGATGCTTCTCCACTTTCTTGGCAGGCATGGTGACATAGAAGAAGGTTCAGTTGCATATGGCAAGGACACAAATGAGTCACGTGGGTTTGGCTTTGTAACATTCAAGACAGTTGAGGCTGCAAGGAAGGCCATAGATGATCCACAAAAGATCCTTGGGGGGAGGAATGTCATTGTAAAACTTGCTGATTCCCACAAAGGCAAAACAATTCAAACACAGTTAGCTACACCAATGGTTCCAACGCCGTTACCTTTAGCGCCTGGATATGCACAACCTGGAAAAGCCCATCCTAGCACCACCCCTCAAGGCTTTGGTTACCCTCCAGCTGTGGGACCATACCACAATAATACTTACTCAAGTCCTCCCATTGCTCCATACCCAACACAGTCACAAATTCCATATCCATATTATATTGGCAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

310

Amino Acids

33.67

Weight (kDa)

8.75

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	66 - 132	6.8e-13	RNA recognition motif
RRM_1	PF00076	157 - 224	5.9e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccII	CGCG	2 cut(s)	72, 313
AciI	CCGC	2 cut(s)	190, 313
AclWI	GGATC	4 cut(s)	173, 459, 638, 649
AcsI	RAATTY	1 cut(s)	897
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	833
AgsI	TTSAA	4 cut(s)	144, 438, 610, 716
AjnI	CCWGG	4 cut(s)	215, 447, 763, 778
AluBI	AGCT	7 cut(s)	25, 103, 196, 281, 371, 728, 830
AluI	AGCT	7 cut(s)	25, 103, 196, 281, 371, 728, 830
Alw21I	GWGCWC	2 cut(s)	364, 373
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	4 cut(s)	173, 459, 638, 649
AoxI	GGCC	2 cut(s)	213, 633
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	245, 623
ApoI	RAATTY	1 cut(s)	897
AspLEI	GCGC	3 cut(s)	72, 74, 763
AspS9I	GGNCC	1 cut(s)	836
AsuHPI	GGTGA	4 cut(s)	39, 347, 480, 548
AvaII	GGWCC	1 cut(s)	836
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	587
Bbv12I	GWGCWC	2 cut(s)	364, 373
BbvI	GCAGC	2 cut(s)	232, 610
BccI	CCATC	3 cut(s)	383, 416, 798
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	4 cut(s)	217, 449, 765, 780
BfaI	CTAG	3 cut(s)	375, 413, 795
BfmI	CTRYAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	764
BisI	GCNGC	2 cut(s)	246, 624
BlsI	GCNGC	2 cut(s)	247, 625
Bme1390I	CCNGG	4 cut(s)	217, 449, 765, 780
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	3 cut(s)	130, 741, 837
BmrFI	CCNGG	4 cut(s)	217, 449, 765, 780
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	792, 844
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	447, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	2 cut(s)	129, 436
Bse3DI	GCAATG	1 cut(s)	870
BseBI	CCWGG	4 cut(s)	217, 449, 765, 780
BseDI	CCNNGG	2 cut(s)	447, 658
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	129, 436
BsePI	GCGCGC	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	232, 610
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	72, 313
BshFI	GGCC	2 cut(s)	215, 635
BsiHKAI	GWGCWC	2 cut(s)	364, 373
BslFI	GGGAC	2 cut(s)	82, 849
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmFI	GGGAC	2 cut(s)	82, 849
BsnI	GGCC	2 cut(s)	215, 635
Bsp1286I	GDGCHC	2 cut(s)	364, 373
Bsp143I	GATC	5 cut(s)	109, 178, 451, 643, 654
BspACI	CCGC	2 cut(s)	190, 313
BspANI	GGCC	2 cut(s)	215, 635
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	2 cut(s)	72, 313
BspLI	GGNNCC	3 cut(s)	130, 741, 837
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	4 cut(s)	173, 459, 638, 649
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	129, 436
BssECI	CCNNGG	2 cut(s)	447, 658
BssHII	GCGCGC	1 cut(s)	70
BssMI	GATC	5 cut(s)	109, 178, 451, 643, 654
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	4 cut(s)	217, 449, 765, 780
Bst4CI	ACNGT	4 cut(s)	359, 616, 723, 891
Bst6I	CTCTTC	2 cut(s)	11, 232
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	72, 194, 530
BstDEI	CTNAG	2 cut(s)	93, 365
BstEII	GGTNACC	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	2 cut(s)	72, 313
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	3 cut(s)	72, 74, 763
BstKTI	GATC	5 cut(s)	112, 181, 454, 646, 657
BstMBI	GATC	5 cut(s)	109, 178, 451, 643, 654
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 76, 368, 632
BstNI	CCWGG	4 cut(s)	217, 449, 765, 780
BstNSI	RCATGY	1 cut(s)	420
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	4 cut(s)	215, 447, 763, 778
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	2 cut(s)	72, 313
BstV1I	GCAGC	2 cut(s)	232, 610
BstX2I	RGATCY	3 cut(s)	178, 451, 654
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	3 cut(s)	178, 451, 654
BsuRI	GGCC	2 cut(s)	215, 635
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	72, 194, 530
CfoI	GCGC	3 cut(s)	72, 74, 763
Cfr13I	GGNCC	1 cut(s)	836
Csp6I	GTAC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	3 cut(s)	397, 417, 533
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	93, 365
DpnI	GATC	5 cut(s)	111, 180, 453, 645, 656
DpnII	GATC	5 cut(s)	109, 178, 451, 643, 654
Eam1104I	CTCTTC	2 cut(s)	11, 232
EarI	CTCTTC	2 cut(s)	11, 232
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	836
Eco53kI	GAGCTC	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	818
EcoICRI	GAGCTC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	818
EcoRII	CCWGG	4 cut(s)	215, 447, 763, 778
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	3 cut(s)	400, 420, 536
FaqI	GGGAC	2 cut(s)	82, 849
FatI	CATG	3 cut(s)	396, 416, 532
FauI	CCCGC	1 cut(s)	306
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	246, 624
FokI	GGATG	1 cut(s)	777
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	246, 624
FspBI	CTAG	3 cut(s)	375, 413, 795
GlaI	GCGC	3 cut(s)	71, 73, 762
GluI	GCNGC	2 cut(s)	246, 624
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	2 cut(s)	215, 635
HhaI	GCGC	3 cut(s)	72, 74, 763
Hin1II	CATG	3 cut(s)	400, 420, 536
Hin6I	GCGC	3 cut(s)	70, 72, 761
HinP1I	GCGC	3 cut(s)	70, 72, 761
HincII	GTYRAC	2 cut(s)	351, 429
HindII	GTYRAC	2 cut(s)	351, 429
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	42, 347, 581, 692
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	4 cut(s)	39, 347, 480, 548
Hpy166II	GTNNAC	4 cut(s)	187, 351, 362, 429
Hpy188I	TCNGA	3 cut(s)	58, 232, 368
Hpy188III	TCNNGA	1 cut(s)	610
Hpy8I	GTNNAC	4 cut(s)	187, 351, 362, 429
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	150, 269, 542, 625
HpyCH4III	ACNGT	4 cut(s)	359, 616, 723, 891
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	6 cut(s)	149, 176, 362, 560, 626, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 76, 368, 632
HpyF3I	CTNAG	2 cut(s)	93, 365
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	3 cut(s)	400, 420, 536
HspAI	GCGC	3 cut(s)	70, 72, 761
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	109, 178, 451, 643, 654
LmnI	GCTCC	3 cut(s)	278, 376, 880
Lsp1109I	GCAGC	2 cut(s)	232, 610
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	3 cut(s)	375, 413, 795
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	7 cut(s)	496, 536, 582, 601, 750, 818, 891
MalI	GATC	5 cut(s)	111, 180, 453, 645, 656
MboI	GATC	5 cut(s)	109, 178, 451, 643, 654
MboII	GAAGA	3 cut(s)	28, 219, 557
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	3 cut(s)	178, 451, 654
MhlI	GDGCHC	2 cut(s)	364, 373
MluCI	AATT	5 cut(s)	144, 156, 384, 711, 897
MlyI	GAGTC	2 cut(s)	356, 590
MmeI	TCCRAC	1 cut(s)	767
MseI	TTAA	3 cut(s)	159, 383, 428
MspA1I	CMGCKG	1 cut(s)	830
MspR9I	CCNGG	4 cut(s)	217, 449, 765, 780
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	4 cut(s)	217, 449, 765, 780
MvnI	CGCG	2 cut(s)	72, 313
MwoI	GCNNNNNNNGC	4 cut(s)	67, 76, 368, 632
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	5 cut(s)	109, 178, 451, 643, 654
NlaIII	CATG	3 cut(s)	400, 420, 536
NlaIV	GGNNCC	3 cut(s)	130, 741, 837
NmuCI	GTSAC	4 cut(s)	496, 536, 582, 891
NspI	RCATGY	1 cut(s)	420
PauI	GCGCGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	42, 692
PkrI	GCNGC	2 cut(s)	247, 625
PleI	GAGTC	2 cut(s)	355, 589
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	2 cut(s)	355, 589
Ppu21I	YACGTR	1 cut(s)	587
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	373
Psp6I	CCWGG	4 cut(s)	215, 447, 763, 778
PspCI	CACGTG	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	818
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	4 cut(s)	215, 447, 763, 778
PspN4I	GGNNCC	3 cut(s)	130, 741, 837
PspPI	GGNCC	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	3 cut(s)	178, 451, 654
PteI	GCGCGC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	3 cut(s)	159, 383, 428
SatI	GCNGC	2 cut(s)	246, 624
Sau3AI	GATC	5 cut(s)	109, 178, 451, 643, 654
Sau96I	GGNCC	1 cut(s)	836
SchI	GAGTC	2 cut(s)	356, 590
ScrFI	CCNGG	4 cut(s)	217, 449, 765, 780
SduI	GDGCHC	2 cut(s)	364, 373
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	836
SmlI	CTYRAG	2 cut(s)	807, 859
SmoI	CTYRAG	2 cut(s)	807, 859
Sse9I	AATT	5 cut(s)	144, 156, 384, 711, 897
SsiI	CCGC	2 cut(s)	190, 313
SspMI	CTAG	3 cut(s)	375, 413, 795
SstI	GAGCTC	1 cut(s)	373
StyD4I	CCNGG	4 cut(s)	215, 447, 763, 778
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	4 cut(s)	359, 616, 723, 891
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	144, 156, 384, 711, 897
TfiI	GAWTC	2 cut(s)	42, 692
Tru1I	TTAA	3 cut(s)	159, 383, 428
Tru9I	TTAA	3 cut(s)	159, 383, 428
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	4 cut(s)	496, 536, 582, 891
TseI	GCWGC	2 cut(s)	245, 623
Tsp45I	GTSAC	4 cut(s)	496, 536, 582, 891
TspDTI	ATGAA	2 cut(s)	51, 316
TspRI	CASTG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	1 cut(s)	897
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	3 cut(s)	375, 413, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.