Rw3G020470

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000611
Physical Location & Seq
Forward (+)
23925438 .. 23926506
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020470.1

Sequence Viewer

Length: 1032 bp
ATGGACTTCACAAAGAAGCGGAAGACGGACGAGAACGGCGACGTTTCGACTGCCCCGCGTTCCCAATTAACAACCCTAACCCCCGACGACTTCCGCAAACTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGAATCCCTCCGCCACGTCACCAACCGTGACCTCACCCTCCGCAAGCTCTTCGTCCGTGGCCTCGGCGGCGACACCACCACCGATTCGCTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTCGACGAGGCGATCGTCATCTTCGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCCGCCGCCGGACATTCGGCGCCGTTCAGTACCAGCAACGGCGGCGCCGATGTCTCGGCGAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATGAGGCCACCGGAAAATCAAAGGGCTTTGCATTCTTAGTGTACAAGACCGAAGAAGGTGCCAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGGTCATCATGTGACTTGGCAAATTAGCTCCCCTCCCGGTGATATTTCCAGGGTCCCTCCACCGCAGCAAATGCAGCCGGGCATGTTTAGGCCACAGCCTCAGCCCGGGCAGTACCCGGTTTTTGCTGGTGGGCATGCGCCAGTGGTTCCTAGGTATAATACTAATTTCAGTCACTATGGGGTGCCTCCACAGTTGCCTCCAACTTCGGTAGGAATGCCTCATGGAGTCTATCCAGACAGTTCGCGGTATGGGGTTCCTCCACCACAGCATCATCAGGCTCCCTCAATGCCAAGAGGACCACCTGGGGGAATGTATCCGCCACCTTACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

343

Amino Acids

37.37

Weight (kDa)

6.9

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 74 - 141 9.8e-15 RNA recognition motif
RRM_7 PF16367 167 - 244 2.8e-07 RNA recognition motif
RRM_1 PF00076 169 - 226 1.9e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 419
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 5 cut(s) 457, 482, 520, 659, 880
AccBSI CCGCTC 2 cut(s) 267, 671
AccII CGCG 2 cut(s) 58, 943
AcyI GRCGYC 3 cut(s) 168, 458, 483
AfaI GTAC 4 cut(s) 437, 469, 644, 812
AfiI CCNNNNNNNGG 3 cut(s) 298, 803, 1004
AgsI TTSAA 3 cut(s) 361, 581, 688
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 3 cut(s) 662, 746, 1000
AluBI AGCT 2 cut(s) 220, 726
AluI AGCT 2 cut(s) 220, 726
Alw26I GTCTC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 5 cut(s) 232, 321, 606, 666, 788
ApeKI GCWGC 2 cut(s) 763, 772
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspA2I CCTAGG 1 cut(s) 848
AspLEI GCGC 4 cut(s) 388, 460, 485, 838
AspS9I GGNCC 4 cut(s) 587, 666, 751, 995
AsuC2I CCSGG 5 cut(s) 735, 777, 804, 805, 815
AsuHPI GGTGA 5 cut(s) 184, 199, 346, 415, 749
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 3 cut(s) 587, 751, 995
AvrII CCTAGG 1 cut(s) 848
BanI GGYRCC 5 cut(s) 457, 482, 520, 659, 880
BbsI GAAGAC 2 cut(s) 29, 265
BbvCI CCTCAGC 1 cut(s) 798
BbvI GCAGC 2 cut(s) 775, 784
BccI CCATC 1 cut(s) 692
BceAI ACGGC 6 cut(s) 52, 134, 430, 445, 493, 508
BcgI CGANNNNNNTGC 6 cut(s) 205, 239, 391, 425, 641, 675
BciT130I CCWGG 3 cut(s) 664, 748, 1002
BciVI GTATCC 1 cut(s) 1023
BcnI CCSGG 5 cut(s) 735, 777, 804, 805, 815
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 2 cut(s) 593, 849
BfoI RGCGCY 2 cut(s) 461, 486
BfuI GTATCC 1 cut(s) 1023
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 764, 773
BlnI CCTAGG 1 cut(s) 848
BlsI GCNGC 7 cut(s) 242, 442, 445, 482, 670, 765, 774
Bme1390I CCNGG 8 cut(s) 664, 735, 748, 777, 804, 805, 815, 1002
Bme18I GGWCC 3 cut(s) 587, 751, 995
BmeT110I CYCGRG 1 cut(s) 803
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 4 cut(s) 587, 666, 751, 995
BmrFI CCNGG 8 cut(s) 664, 735, 748, 777, 804, 805, 815, 1002
BmsI GCATC 1 cut(s) 976
BpiI GAAGAC 2 cut(s) 29, 265
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 5 cut(s) 735, 777, 804, 805, 815
BsaBI GATNNNNATC 2 cut(s) 308, 702
BsaHI GRCGYC 3 cut(s) 168, 458, 483
BsaJI CCNNGG 9 cut(s) 229, 235, 336, 537, 663, 747, 803, 848, 1001
BsaWI WCCGGW 2 cut(s) 326, 611
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 803, 1004
Bse1I ACTGG 1 cut(s) 839
Bse8I GATNNNNATC 2 cut(s) 308, 702
BseBI CCWGG 3 cut(s) 664, 748, 1002
BseDI CCNNGG 9 cut(s) 229, 235, 336, 537, 663, 747, 803, 848, 1001
BseJI GATNNNNATC 2 cut(s) 308, 702
BseLI CCNNNNNNNGG 3 cut(s) 298, 803, 1004
BseMII CTCAG 1 cut(s) 812
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 2 cut(s) 92, 526
BseXI GCAGC 2 cut(s) 775, 784
Bsh1236I CGCG 2 cut(s) 58, 943
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 5 cut(s) 234, 323, 608, 668, 790
BshNI GGYRCC 5 cut(s) 457, 482, 520, 659, 880
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 7 cut(s) 327, 447, 612, 735, 776, 804, 815
BslFI GGGAC 3 cut(s) 100, 529, 737
BslI CCNNNNNNNGG 3 cut(s) 298, 803, 1004
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 3 cut(s) 100, 529, 737
BsmI GAATGC 2 cut(s) 632, 918
BsnI GGCC 5 cut(s) 234, 323, 608, 668, 790
BsoBI CYCGRG 1 cut(s) 803
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 2 cut(s) 303, 408
BspANI GGCC 5 cut(s) 234, 323, 608, 668, 790
BspCNI CTCAG 1 cut(s) 811
BspFNI CGCG 2 cut(s) 58, 943
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 5 cut(s) 457, 482, 520, 659, 880
BsrBI CCGCTC 2 cut(s) 267, 671
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 9 cut(s) 229, 235, 336, 537, 663, 747, 803, 848, 1001
BssMI GATC 2 cut(s) 303, 408
BssNI GRCGYC 3 cut(s) 168, 458, 483
BssT1I CCWWGG 2 cut(s) 336, 848
Bst2UI CCWGG 3 cut(s) 664, 748, 1002
Bst4CI ACNGT 5 cut(s) 200, 427, 520, 891, 938
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 3 cut(s) 168, 458, 483
BstAPI GCANNNNNTGC 1 cut(s) 769
BstAUI TGTACA 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 218, 366, 834
BstDEI CTNAG 2 cut(s) 637, 798
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 296
BstFNI CGCG 2 cut(s) 58, 943
BstH2I RGCGCY 2 cut(s) 461, 486
BstHHI GCGC 4 cut(s) 388, 460, 485, 838
BstKTI GATC 2 cut(s) 306, 411
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 2 cut(s) 303, 408
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 8 cut(s) 240, 374, 383, 480, 563, 668, 769, 772
BstNI CCWGG 3 cut(s) 664, 748, 1002
BstNSI RCATGY 2 cut(s) 784, 836
BstSCI CCNGG 8 cut(s) 662, 733, 746, 775, 802, 803, 813, 1000
BstUI CGCG 2 cut(s) 58, 943
BstV1I GCAGC 2 cut(s) 775, 784
BstV2I GAAGAC 2 cut(s) 29, 265
BsuI GTATCC 1 cut(s) 1023
BsuRI GGCC 5 cut(s) 234, 323, 608, 668, 790
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 846
Cac8I GCNNGC 3 cut(s) 218, 366, 834
CfoI GCGC 4 cut(s) 388, 460, 485, 838
Cfr13I GGNCC 4 cut(s) 587, 666, 751, 995
Cfr9I CCCGGG 1 cut(s) 803
Csp6I GTAC 4 cut(s) 436, 468, 643, 811
CviAII CATG 5 cut(s) 112, 707, 781, 833, 920
CviQI GTAC 4 cut(s) 436, 468, 643, 811
DdeI CTNAG 2 cut(s) 637, 798
DinI GGCGCC 2 cut(s) 459, 484
DpnI GATC 2 cut(s) 305, 410
DpnII GATC 2 cut(s) 303, 408
DrdI GACNNNNNNGTC 2 cut(s) 128, 419
DseDI GACNNNNNNGTC 2 cut(s) 128, 419
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 3 cut(s) 173, 268, 1005
Eco130I CCWWGG 2 cut(s) 336, 848
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 587, 751, 995
Eco88I CYCGRG 1 cut(s) 803
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 587, 751
EcoRII CCWGG 3 cut(s) 662, 746, 1000
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 336, 848
EgeI GGCGCC 2 cut(s) 459, 484
EheI GGCGCC 2 cut(s) 459, 484
ErhI CCWWGG 2 cut(s) 336, 848
FaeI CATG 5 cut(s) 115, 710, 784, 836, 923
FaiI YATR 8 cut(s) 113, 708, 782, 834, 855, 876, 921, 948
FaqI GGGAC 3 cut(s) 100, 529, 737
FatI CATG 5 cut(s) 111, 706, 780, 832, 919
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 764, 773
Fsp4HI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 764, 773
FspBI CTAG 2 cut(s) 593, 849
GlaI GCGC 4 cut(s) 387, 459, 484, 837
GluI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 764, 773
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 2 cut(s) 461, 486
HaeIII GGCC 5 cut(s) 234, 323, 608, 668, 790
HapII CCGG 7 cut(s) 327, 447, 612, 735, 776, 804, 815
HhaI GCGC 4 cut(s) 388, 460, 485, 838
Hin1I GRCGYC 3 cut(s) 168, 458, 483
Hin1II CATG 5 cut(s) 115, 710, 784, 836, 923
Hin6I GCGC 4 cut(s) 386, 458, 483, 836
HinP1I GCGC 4 cut(s) 386, 458, 483, 836
HinfI GANTC 5 cut(s) 176, 257, 348, 420, 924
HpaII CCGG 7 cut(s) 327, 447, 612, 735, 776, 804, 815
HphI GGTGA 5 cut(s) 184, 199, 346, 415, 749
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 2 cut(s) 541, 572
Hpy188III TCNNGA 2 cut(s) 514, 932
Hpy8I GTNNAC 1 cut(s) 643
Hpy99I CGWCG 9 cut(s) 44, 89, 134, 155, 170, 299, 374, 416, 515
HpyAV CCTTC 4 cut(s) 292, 367, 578, 650
HpyCH4III ACNGT 5 cut(s) 200, 427, 520, 891, 938
HpyCH4IV ACGT 4 cut(s) 42, 168, 189, 510
HpyCH4V TGCA 2 cut(s) 632, 772
HpyF10VI GCNNNNNNNGC 8 cut(s) 240, 374, 383, 480, 563, 668, 769, 772
HpyF3I CTNAG 2 cut(s) 637, 798
HpySE526I ACGT 4 cut(s) 42, 168, 189, 510
Hsp92I GRCGYC 3 cut(s) 168, 458, 483
Hsp92II CATG 5 cut(s) 115, 710, 784, 836, 923
HspAI GCGC 4 cut(s) 386, 458, 483, 836
KasI GGCGCC 2 cut(s) 457, 482
KflI GGGWCCC 1 cut(s) 751
Kzo9I GATC 2 cut(s) 303, 408
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 4 cut(s) 267, 272, 731, 982
Lsp1109I GCAGC 2 cut(s) 775, 784
LweI GCATC 1 cut(s) 976
MaeI CTAG 2 cut(s) 593, 849
MaeII ACGT 4 cut(s) 42, 168, 189, 510
MaeIII GTNAC 7 cut(s) 190, 200, 352, 421, 427, 709, 869
MalI GATC 2 cut(s) 305, 410
MbiI CCGCTC 2 cut(s) 267, 671
MboI GATC 2 cut(s) 303, 408
MboII GAAGA 8 cut(s) 34, 214, 265, 304, 418, 514, 593, 665
MluCI AATT 4 cut(s) 65, 381, 720, 862
Mly113I GGCGCC 2 cut(s) 458, 483
MlyI GAGTC 2 cut(s) 429, 933
MmeI TCCRAC 1 cut(s) 923
MseI TTAA 1 cut(s) 68
MspI CCGG 7 cut(s) 327, 447, 612, 735, 776, 804, 815
MspR9I CCNGG 8 cut(s) 664, 735, 748, 777, 804, 805, 815, 1002
Mva1269I GAATGC 2 cut(s) 632, 918
MvaI CCWGG 3 cut(s) 664, 748, 1002
MvnI CGCG 2 cut(s) 58, 943
MwoI GCNNNNNNNGC 8 cut(s) 240, 374, 383, 480, 563, 668, 769, 772
NarI GGCGCC 2 cut(s) 458, 483
NciI CCSGG 5 cut(s) 735, 777, 804, 805, 815
NdeII GATC 2 cut(s) 303, 408
NlaIII CATG 5 cut(s) 115, 710, 784, 836, 923
NmeAIII GCCGAG 2 cut(s) 216, 473
NmuCI GTSAC 7 cut(s) 190, 200, 352, 421, 427, 709, 869
NspI RCATGY 2 cut(s) 784, 836
PaeI GCATGC 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 8 cut(s) 36, 126, 138, 147, 291, 303, 312, 483
PctI GAATGC 2 cut(s) 632, 918
PfeI GAWTC 3 cut(s) 176, 257, 348
PkrI GCNGC 7 cut(s) 242, 442, 445, 482, 670, 765, 774
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 2 cut(s) 428, 932
PluTI GGCGCC 2 cut(s) 461, 486
PpsI GAGTC 2 cut(s) 428, 932
PpuMI RGGWCCY 2 cut(s) 587, 751
Psp5II RGGWCCY 2 cut(s) 587, 751
Psp6I CCWGG 3 cut(s) 662, 746, 1000
PspGI CCWGG 3 cut(s) 662, 746, 1000
PspPI GGNCC 4 cut(s) 587, 666, 751, 995
PspPPI RGGWCCY 2 cut(s) 587, 751
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 4 cut(s) 437, 469, 644, 812
RsaNI GTAC 4 cut(s) 436, 468, 643, 811
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 764, 773
Sau3AI GATC 2 cut(s) 303, 408
Sau96I GGNCC 4 cut(s) 587, 666, 751, 995
SchI GAGTC 2 cut(s) 429, 933
ScrFI CCNGG 8 cut(s) 664, 735, 748, 777, 804, 805, 815, 1002
SfaNI GCATC 1 cut(s) 976
SfoI GGCGCC 2 cut(s) 459, 484
SinI GGWCC 3 cut(s) 587, 751, 995
SmaI CCCGGG 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SphI GCATGC 1 cut(s) 836
SrfI GCCCGGGC 1 cut(s) 805
Sse9I AATT 4 cut(s) 65, 381, 720, 862
SspDI GGCGCC 2 cut(s) 457, 482
SspMI CTAG 2 cut(s) 593, 849
StyD4I CCNGG 8 cut(s) 662, 733, 746, 775, 802, 803, 813, 1000
StyI CCWWGG 2 cut(s) 336, 848
TaaI ACNGT 5 cut(s) 200, 427, 520, 891, 938
TaiI ACGT 4 cut(s) 45, 171, 192, 513
TaqI TCGA 7 cut(s) 47, 132, 141, 174, 294, 315, 411
TaqII GACCGA 1 cut(s) 665
TasI AATT 4 cut(s) 65, 381, 720, 862
TatI WGTACW 1 cut(s) 642
TauI GCSGC 5 cut(s) 243, 443, 446, 483, 671
TfiI GAWTC 3 cut(s) 176, 257, 348
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 7 cut(s) 190, 200, 352, 421, 427, 709, 869
TseI GCWGC 2 cut(s) 763, 772
Tsp45I GTSAC 7 cut(s) 190, 200, 352, 421, 427, 709, 869
TspGWI ACGGA 4 cut(s) 41, 218, 259, 360
TspMI CCCGGG 1 cut(s) 803
TspRI CASTG 1 cut(s) 846
VpaK11BI GGWCC 3 cut(s) 587, 751, 995
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 2 cut(s) 784, 836
XmaI CCCGGG 1 cut(s) 803
XmaJI CCTAGG 1 cut(s) 848
XspI CTAG 2 cut(s) 593, 849
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.